RchiOBHm_Chr4g0394291
ERF Family

Transducin WD40 repeat-like superfamily protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
OG0007851
Physical Location & Seq
Forward (+)
9870174 .. 9874681
4508 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ36679

Sequence Viewer

Length: 2784 bp
ATGTCCGCCTTATCCGCTCGCCGCCTCAAAGACCGCGGCGGCGTCGCCGCACCCACCAAACCCGACAAGAGATCCTCCAGCGTCGGCAAGGAAAACCCGCCCGGGCCCACTTTCCGGACTTCGGCCCAGAAGCCCGCCATGCGGCCCGTTCCACGTGTCGACAAGGCGGCCGCGAATACCTGCGGCGATGCGCGCGCGCGGTGGTCCATGCCTTCTGTGGCGAAAGGTAGGAGCTCTAGCCCTTCTGAGTTTTTTAGGGTTGCCGCATCGGGAAATGTTGGGCCGAAGAATCGGAGGGGTTCTGCGGATCGGGTCGAGAGGGGTCCGAGTCCGGGTTCGGGTTTGGGCGAGAGGGAAAGGTCAGGGAGTGCAGGGAGGAGTTTGAGTAGGGGAAGAGGATCAGGGGTTAGGGATTTGGAAGTCAAAGTTGGTCAATTGGGGGTTAGGGTTTTCAGGGATTTGAAAGATGATGGTAAAATTGGGGTGAAAAAGAATGGAACTTGTGGAGGACTGGAAGTGAAATCGGTGGAGATTGAGAAGAATTTTAGTGGGATTAGGTCTAGGGTTTTGGGCAGTTGTGATGGAGTAGCTAATTTGAAAAACCCAGATGGGGTTGATGGTAGGGTTTTGGAGAGATCCAATAGTGGAAAGAGTAGAAGTAGTGATATTGGGAATCGAGCTGGTTTGGGATTGAAGGAGTCGAGTGAGAAATGTGTGAGCAATGGGAAGGTTTTGGAGGGTTTGAAGGAGAAGGGGTTGAAGGAAGAGGGAAGTAATGGCGGTCGAGTTGGTATAAAACATCCTAGTAAGCTTCATGAGAAGCTTGCTTTCTTGGAAGGGAAGGTGAAGAGGATTGCGTCTGATATAAAGAAGACTAAGGAGATATTGGATATGAATAACCCAGATGCATCGAAGGTGATACTTTCTGATATTCAGGAGAAGATTACAGGGATTGAGAAGGCCATGGTACATGTTTCCAATGGCTCTGGTGGTAAGGTGTTGAAAGGTAATGAGCAGGATCACCAGGACGCCAAAGTGGTTGAGAACGGTCACATTGAGCAGGTGTGTAAGGTGAAGAGTTCGGTAAAGGGTTTGAATCGTGAGGACTTGGAAGCTAGACTCTTTCCTCATCATAAGTTGATTAGAAACCGCACAGCCTTGAAAGCATCATCAGAAAGTTCTCAATGTCAAGTAGTTGAAACCAGTTGTGAATCAAAAGTGGATGAAAAGACAGTGTGCCTTATAGATGAGAACCCAATTGCTATAGATTTCTTGGCTTCCTTGGATAATGAGCAAACTCAAGTTTCTACAAGGGATGGACACGAGGATTTGGAAAATTGTGAGGTTCAAGCTGTGGATGGTGCCACCACTGCAGGAGTTGAAAAATCTTCAAAAATGGTCACTGGTAAGCAGGATGACGAGCTCATTCTTACAACTGATGAAACACTTGATGAGTCCGGTGATCAGGAGAATAGACAAGTGATCATTGATGAGGAAACTGAGGATACTAGCATTTACCAGCTCAATGGAATAGGCCAGAAGACCTCAACTGGTGGGTGGTTTATGTCTGAGGGTGAGTCAGTTCTTCTTGCTCATGATGATGGTTCGTGCACCTTCTATGATATTGTAAACTCTGAGGAAAAGGCTTTGTACAAGCCTCCTGCAGGAGTTTCACCTAATATGTGGAGAGATTGCTGGATCATCCGAGCTCCTAGTGCAGATGGTTGCTCAGGAAGGTATGTTGTGGCTGCATCTGCTGGAAACACAATGGATTCAGGTTTTTGCTCGTGGGATTTTTATGCCAAAGATGTGTGTGCTTTCCATATTGACGATGGTTTAGCCCCGTCAAGGACAGTACTTGGCCCCTTGCCCGACAACATCTCATACAGAAGAAACACTTTGTCTAATCTTTTGGATCCAGAAACTCAACAATGGTGGTATAGACCTTGTGGACCTCTTATTGTCTCATCTGCCACCTGTCAGAGAGTTGTGAGAATCTATGACATTCGTGACGGTGAGCAAGTTATGAAATGGGATGTACCGAAGCCTGTGTTAACAATGGATAACTCAAGCCCCTTGCAGTGGAGAAACAGAGGAAAAGTTGTTGTAGCTGACATTGAAACAATTTCCATCTGGGATGTGAACTCTCTCAACCCTCAACCTTTATTATCTGTTTCTTCTGCTGGTCGGAAAATCTCTGCTCTTCATGTGAATAACACTGACTCTGAACTTGGTGGCGGAGTTCGCCAAAGAGTAAGTTCAGCAGAAGCAGAAGGAAATGATGGAGTGTTCTGTACCCAGGATTCAATAAACATTCTAGATTTTCGCAATCCGTCTGGTATAGGTCTGAAAATACCAAAGCTTGGTGTAACAGCACAGTCAGTTTTCTCTCGTGGAGATTCCATCTTCCTTGGCTGCCCCAATGGAAGGTCTGGATGGAAAAAACAGTCCTCTTCACAAGTGCAACAGTTTTCAATTCGAAAACAAAGGCTAATAAGCACTTACGCCTTGCCAGAATCAAATGCTCACAGCCATCACACAGCTATTACTCAAGTTTGGGGGAACTCAAACCTAGTCATGGGTGTTTGTGGATTGGGGCTGTTTGTGTTTGATGCCTTGAAGGATGACGGTGTGCCATCTTTCACCAATGATAGTGGAAGCACTCAAAAAGATTGTGAAGTCATTGGCCCAGATGACTTGTATGCACCTTCTTTTGATTACATGGACTCTCGTGCTCTTATCATATCAAGAGATCGCCCAGCATTATGGAGGCACTTATCGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005618 GO:0005623 GO:0030312 GO:0044464 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

927

Amino Acids

100.42

Weight (kDa)

7.47

Isoelectric Point (pI)

42.28

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Beta-prop_At4g14310 PF25465 640 - 922 5.1e-156 At4g14310 8-bladed propeller
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1051
Acc36I ACCTGC 2 cut(s) 188, 1051
AccB1I GGYRCC 1 cut(s) 1361
AccB7I CCANNNNNTGG 1 cut(s) 2363
AccBSI CCGCTC 1 cut(s) 17
AccI GTMKAC 1 cut(s) 159
AccII CGCG 6 cut(s) 36, 173, 193, 195, 197, 199
AccIII TCCGGA 1 cut(s) 114
AclWI GGATC 8 cut(s) 66, 315, 406, 630, 1026, 1706, 1910, 1923
AcoI YGGCCR 1 cut(s) 168
AcsI RAATTY 1 cut(s) 541
AcvI CACGTG 1 cut(s) 155
AcyI GRCGYC 2 cut(s) 42, 1029
AfaI GTAC 5 cut(s) 969, 1652, 1857, 2040, 2296
AflIII ACRYGT 2 cut(s) 154, 970
AjnI CCWGG 2 cut(s) 1023, 2298
AjuI GAANNNNNNNTTGG 2 cut(s) 411, 443
Alw21I GWGCWC 5 cut(s) 236, 1425, 1613, 1711, 2737
Alw26I GTCTC 1 cut(s) 1969
Alw44I GTGCAC 1 cut(s) 1609
AlwI GGATC 8 cut(s) 66, 315, 406, 630, 1026, 1706, 1910, 1923
Ama87I CYCGRG 1 cut(s) 101
Aor13HI TCCGGA 1 cut(s) 114
AoxI GGCC 9 cut(s) 104, 123, 143, 168, 281, 960, 1534, 1861, 2686
ApaI GGGCCC 1 cut(s) 108
ApaLI GTGCAC 1 cut(s) 1609
ApeKI GCWGC 2 cut(s) 1748, 2415
ApoI RAATTY 1 cut(s) 541
AspLEI GCGC 4 cut(s) 193, 195, 197, 199
AsuC2I CCSGG 3 cut(s) 102, 103, 333
AsuII TTCGAA 1 cut(s) 2479
AvaI CYCGRG 1 cut(s) 101
AvaII GGWCC 3 cut(s) 204, 323, 1952
BaeGI GKGCMC 2 cut(s) 108, 1613
BamHI GGATCC 1 cut(s) 1915
BanI GGYRCC 1 cut(s) 1361
BanII GRGCYC 4 cut(s) 108, 236, 1425, 1711
BauI CACGAG 4 cut(s) 1322, 1786, 2391, 2730
BbrPI CACGTG 1 cut(s) 155
BbsI GAAGAC 2 cut(s) 878, 1547
Bbv12I GWGCWC 5 cut(s) 236, 1425, 1613, 1711, 2737
BbvI GCAGC 2 cut(s) 1735, 2402
BciT130I CCWGG 2 cut(s) 1025, 2300
BciVI GTATCC 1 cut(s) 1498
BclI TGATCA 2 cut(s) 1462, 1482
BcnI CCSGG 3 cut(s) 102, 103, 333
BcoDI GTCTC 1 cut(s) 1969
BfaI CTAG 8 cut(s) 237, 561, 804, 1116, 1509, 1713, 2318, 2573
BfmI CTRYAG 3 cut(s) 1263, 1371, 1662
BfuAI ACCTGC 2 cut(s) 188, 1051
BfuI GTATCC 1 cut(s) 1498
BmcAI AGTACT 1 cut(s) 1857
Bme1390I CCNGG 5 cut(s) 102, 103, 333, 1025, 2300
Bme18I GGWCC 3 cut(s) 204, 323, 1952
BmeT110I CYCGRG 1 cut(s) 101
BmiI GGNNCC 5 cut(s) 106, 324, 1363, 1864, 1917
BmrFI CCNGG 5 cut(s) 102, 103, 333, 1025, 2300
BmsI GCATC 7 cut(s) 178, 275, 895, 917, 1175, 1760, 2602
BpiI GAAGAC 2 cut(s) 878, 1547
BpmI CTGGAG 1 cut(s) 61
Bpu10I CCTNAGC 1 cut(s) 1729
Bpu14I TTCGAA 1 cut(s) 2479
BpuEI CTTGAG 3 cut(s) 1284, 2053, 2535
BpuMI CCSGG 3 cut(s) 102, 103, 333
BsaAI YACGTR 1 cut(s) 155
BsaHI GRCGYC 2 cut(s) 42, 1029
BsaJI CCNNGG 6 cut(s) 34, 101, 963, 1281, 2298, 2410
BsaWI WCCGGW 2 cut(s) 114, 1457
BsaXI ACNNNNNCTCC 4 cut(s) 370, 400, 740, 770
Bse1I ACTGG 4 cut(s) 516, 1203, 1408, 1555
Bse3DI GCAATG 1 cut(s) 727
BseAI TCCGGA 1 cut(s) 114
BseBI CCWGG 2 cut(s) 1025, 2300
BseDI CCNNGG 6 cut(s) 34, 101, 963, 1281, 2298, 2410
BseMI GCAATG 1 cut(s) 727
BseMII CTCAG 5 cut(s) 237, 1491, 1560, 1626, 1743
BseNI ACTGG 4 cut(s) 516, 1203, 1408, 1555
BsePI GCGCGC 3 cut(s) 191, 193, 195
BseRI GAGGAG 1 cut(s) 391
BseSI GKGCMC 2 cut(s) 108, 1613
BseX3I CGGCCG 1 cut(s) 168
BseXI GCAGC 2 cut(s) 1735, 2402
BseYI CCCAGC 1 cut(s) 2758
BsgI GTGCAG 2 cut(s) 390, 1737
Bsh1236I CGCG 6 cut(s) 36, 173, 193, 195, 197, 199
Bsh1285I CGRYCG 2 cut(s) 171, 784
BshFI GGCC 9 cut(s) 106, 125, 145, 170, 283, 962, 1536, 1863, 2688
BshNI GGYRCC 1 cut(s) 1361
BsiEI CGRYCG 2 cut(s) 171, 784
BsiHKAI GWGCWC 5 cut(s) 236, 1425, 1613, 1711, 2737
BsiHKCI CYCGRG 1 cut(s) 101
BsiSI CCGG 4 cut(s) 102, 115, 332, 1458
BsmAI GTCTC 1 cut(s) 1969
BsnI GGCC 9 cut(s) 106, 125, 145, 170, 283, 962, 1536, 1863, 2688
BsoBI CYCGRG 1 cut(s) 101
Bsp119I TTCGAA 1 cut(s) 2479
Bsp120I GGGCCC 1 cut(s) 104
Bsp1286I GDGCHC 6 cut(s) 108, 236, 1425, 1613, 1711, 2737
Bsp13I TCCGGA 1 cut(s) 114
Bsp1407I TGTACA 1 cut(s) 1650
Bsp19I CCATGG 1 cut(s) 963
BspANI GGCC 9 cut(s) 106, 125, 145, 170, 283, 962, 1536, 1863, 2688
BspCNI CTCAG 5 cut(s) 238, 1492, 1561, 1627, 1742
BspEI TCCGGA 1 cut(s) 114
BspFNI CGCG 6 cut(s) 36, 173, 193, 195, 197, 199
BspHI TCATGA 2 cut(s) 814, 1594
BspLI GGNNCC 5 cut(s) 106, 324, 1363, 1864, 1917
BspMAI CTGCAG 2 cut(s) 1375, 1666
BspMI ACCTGC 2 cut(s) 188, 1051
BspPI GGATC 8 cut(s) 66, 315, 406, 630, 1026, 1706, 1910, 1923
BspQI GCTCTTC 1 cut(s) 2208
BspT104I TTCGAA 1 cut(s) 2479
BspT107I GGYRCC 1 cut(s) 1361
BsrBI CCGCTC 1 cut(s) 17
BsrDI GCAATG 1 cut(s) 727
BsrGI TGTACA 1 cut(s) 1650
BsrI ACTGG 4 cut(s) 516, 1203, 1408, 1555
BssECI CCNNGG 6 cut(s) 34, 101, 963, 1281, 2298, 2410
BssHII GCGCGC 3 cut(s) 191, 193, 195
BssNI GRCGYC 2 cut(s) 42, 1029
BssSI CACGAG 4 cut(s) 1322, 1786, 2391, 2730
BssT1I CCWWGG 3 cut(s) 963, 1281, 2410
Bst2BI CACGAG 4 cut(s) 1322, 1786, 2391, 2730
Bst2UI CCWGG 2 cut(s) 1025, 2300
Bst4CI ACNGT 8 cut(s) 1049, 1234, 1855, 2015, 2379, 2448, 2469, 2630
Bst6I CTCTTC 6 cut(s) 388, 759, 842, 1070, 2208, 2458
BstACI GRCGYC 2 cut(s) 42, 1029
BstAUI TGTACA 1 cut(s) 1650
BstBAI YACGTR 1 cut(s) 155
BstBI TTCGAA 1 cut(s) 2479
BstC8I GCNNGC 6 cut(s) 19, 135, 193, 195, 197, 825
BstDEI CTNAG 6 cut(s) 246, 876, 1500, 1569, 1635, 1729
BstDSI CCRYGG 2 cut(s) 34, 963
BstENI CCTNNNNNAGG 1 cut(s) 1662
BstFNI CGCG 6 cut(s) 36, 173, 193, 195, 197, 199
BstHHI GCGC 4 cut(s) 193, 195, 197, 199
BstMAI GTCTC 1 cut(s) 1969
BstMCI CGRYCG 2 cut(s) 171, 784
BstMWI GCNNNNNNNGC 8 cut(s) 14, 139, 192, 1163, 1370, 1715, 1754, 2244
BstNI CCWGG 2 cut(s) 1025, 2300
BstNSI RCATGY 1 cut(s) 974
BstSCI CCNGG 5 cut(s) 100, 101, 331, 1023, 2298
BstSFI CTRYAG 3 cut(s) 1263, 1371, 1662
BstSLI GKGCMC 2 cut(s) 108, 1613
BstUI CGCG 6 cut(s) 36, 173, 193, 195, 197, 199
BstV1I GCAGC 2 cut(s) 1735, 2402
BstV2I GAAGAC 2 cut(s) 878, 1547
BstX2I RGATCY 3 cut(s) 71, 635, 1915
BstXI CCANNNNNNTGG 2 cut(s) 1526, 2766
BstYI RGATCY 3 cut(s) 71, 635, 1915
BstZI CGGCCG 1 cut(s) 168
BsuI GTATCC 1 cut(s) 1498
BsuRI GGCC 9 cut(s) 106, 125, 145, 170, 283, 962, 1536, 1863, 2688
BtgI CCRYGG 2 cut(s) 34, 963
BtgZI GCGATG 1 cut(s) 201
BtsI GCAGTG 2 cut(s) 1368, 2087
BtsIMutI CAGTG 5 cut(s) 1239, 1368, 1401, 2087, 2217
BveI ACCTGC 2 cut(s) 188, 1051
Cac8I GCNNGC 6 cut(s) 19, 135, 193, 195, 197, 825
CciI TCATGA 2 cut(s) 814, 1594
CciNI GCGGCCGC 1 cut(s) 168
CfoI GCGC 4 cut(s) 193, 195, 197, 199
Cfr42I CCGCGG 1 cut(s) 37
Cfr9I CCCGGG 1 cut(s) 101
CseI GACGC 4 cut(s) 31, 70, 846, 1037
Csp6I GTAC 5 cut(s) 968, 1651, 1856, 2039, 2295
CspCI CAANNNNNGTGG 4 cut(s) 1916, 1951, 2635, 2670
CviAII CATG 9 cut(s) 139, 208, 815, 964, 971, 1595, 2207, 2578, 2722
CviQI GTAC 5 cut(s) 968, 1651, 1856, 2039, 2295
DdeI CTNAG 6 cut(s) 246, 876, 1500, 1569, 1635, 1729
EaeI YGGCCR 1 cut(s) 168
EagI CGGCCG 1 cut(s) 168
Eam1104I CTCTTC 6 cut(s) 388, 759, 842, 1070, 2208, 2458
EarI CTCTTC 6 cut(s) 388, 759, 842, 1070, 2208, 2458
EciI GGCGGA 1 cut(s) 2253
Ecl136II GAGCTC 3 cut(s) 234, 1423, 1709
EclXI CGGCCG 1 cut(s) 168
Eco130I CCWWGG 3 cut(s) 963, 1281, 2410
Eco24I GRGCYC 4 cut(s) 108, 236, 1425, 1711
Eco47I GGWCC 3 cut(s) 204, 323, 1952
Eco52I CGGCCG 1 cut(s) 168
Eco53kI GAGCTC 3 cut(s) 234, 1423, 1709
Eco72I CACGTG 1 cut(s) 155
Eco88I CYCGRG 1 cut(s) 101
EcoICRI GAGCTC 3 cut(s) 234, 1423, 1709
EcoNI CCTNNNNNAGG 1 cut(s) 1662
EcoRII CCWGG 2 cut(s) 1023, 2298
EcoT14I CCWWGG 3 cut(s) 963, 1281, 2410
EcoT22I ATGCAT 1 cut(s) 910
EcoT38I GRGCYC 4 cut(s) 108, 236, 1425, 1711
ErhI CCWWGG 3 cut(s) 963, 1281, 2410
FaeI CATG 9 cut(s) 142, 211, 818, 967, 974, 1598, 2210, 2581, 2725
FalI AAGNNNNNCTT 2 cut(s) 1882, 1914
FatI CATG 9 cut(s) 138, 207, 814, 963, 970, 1594, 2206, 2577, 2721
FauI CCCGC 2 cut(s) 105, 142
FbaI TGATCA 2 cut(s) 1462, 1482
FblI GTMKAC 1 cut(s) 159
FriOI GRGCYC 4 cut(s) 108, 236, 1425, 1711
FspBI CTAG 8 cut(s) 237, 561, 804, 1116, 1509, 1713, 2318, 2573
GlaI GCGC 4 cut(s) 192, 194, 196, 198
GsaI CCCAGC 1 cut(s) 2762
GsuI CTGGAG 1 cut(s) 61
HaeIII GGCC 9 cut(s) 106, 125, 145, 170, 283, 962, 1536, 1863, 2688
HapII CCGG 4 cut(s) 102, 115, 332, 1458
HgaI GACGC 4 cut(s) 31, 70, 846, 1037
HhaI GCGC 4 cut(s) 193, 195, 197, 199
Hin1I GRCGYC 2 cut(s) 42, 1029
Hin1II CATG 9 cut(s) 142, 211, 818, 967, 974, 1598, 2210, 2581, 2725
Hin6I GCGC 4 cut(s) 191, 193, 195, 197
HinP1I GCGC 4 cut(s) 191, 193, 195, 197
HincII GTYRAC 2 cut(s) 160, 2055
HindII GTYRAC 2 cut(s) 160, 2055
HindIII AAGCTT 3 cut(s) 809, 821, 2360
HpaI GTTAAC 1 cut(s) 2055
HpaII CCGG 4 cut(s) 102, 115, 332, 1458
Hpy166II GTNNAC 6 cut(s) 160, 1611, 1630, 1952, 2055, 2143
Hpy8I GTNNAC 6 cut(s) 160, 1611, 1630, 1952, 2055, 2143
Hpy99I CGWCG 2 cut(s) 47, 86
HpyCH4III ACNGT 8 cut(s) 1049, 1234, 1855, 2015, 2379, 2448, 2469, 2630
HpyCH4IV ACGT 1 cut(s) 154
HpyF10VI GCNNNNNNNGC 8 cut(s) 14, 139, 192, 1163, 1370, 1715, 1754, 2244
HpyF3I CTNAG 6 cut(s) 246, 876, 1500, 1569, 1635, 1729
HpySE526I ACGT 1 cut(s) 154
Hsp92I GRCGYC 2 cut(s) 42, 1029
Hsp92II CATG 9 cut(s) 142, 211, 818, 967, 974, 1598, 2210, 2581, 2725
HspAI GCGC 4 cut(s) 191, 193, 195, 197
Kpn2I TCCGGA 1 cut(s) 114
Ksp22I TGATCA 2 cut(s) 1462, 1482
KspAI GTTAAC 1 cut(s) 2055
KspI CCGCGG 1 cut(s) 37
LguI GCTCTTC 1 cut(s) 2208
LmnI GCTCC 2 cut(s) 231, 1714
Lsp1109I GCAGC 2 cut(s) 1735, 2402
LweI GCATC 7 cut(s) 178, 275, 895, 917, 1175, 1760, 2602
MaeI CTAG 8 cut(s) 237, 561, 804, 1116, 1509, 1713, 2318, 2573
MaeII ACGT 1 cut(s) 154
MaeIII GTNAC 4 cut(s) 1049, 1399, 2009, 2368
MauBI CGCGCGCG 2 cut(s) 193, 195
MbiI CCGCTC 1 cut(s) 17
MfeI CAATTG 2 cut(s) 434, 1257
MflI RGATCY 3 cut(s) 71, 635, 1915
MhlI GDGCHC 6 cut(s) 108, 236, 1425, 1613, 1711, 2737
MluCI AATT 8 cut(s) 434, 477, 541, 592, 1257, 1336, 2124, 2475
MlyI GAGTC 7 cut(s) 337, 707, 1113, 1463, 1586, 2216, 2720
MmeI TCCRAC 1 cut(s) 2168
Mph1103I ATGCAT 1 cut(s) 910
MroI TCCGGA 1 cut(s) 114
MseI TTAA 1 cut(s) 2054
MslI CAYNNNNRTG 1 cut(s) 1599
MspA1I CMGCKG 1 cut(s) 36
MspI CCGG 4 cut(s) 102, 115, 332, 1458
MspR9I CCNGG 5 cut(s) 102, 103, 333, 1025, 2300
MunI CAATTG 2 cut(s) 434, 1257
MvaI CCWGG 2 cut(s) 1025, 2300
MvnI CGCG 6 cut(s) 36, 173, 193, 195, 197, 199
MwoI GCNNNNNNNGC 8 cut(s) 14, 139, 192, 1163, 1370, 1715, 1754, 2244
NciI CCSGG 3 cut(s) 102, 103, 333
NcoI CCATGG 1 cut(s) 963
NlaIII CATG 9 cut(s) 142, 211, 818, 967, 974, 1598, 2210, 2581, 2725
NlaIV GGNNCC 5 cut(s) 106, 324, 1363, 1864, 1917
NmuCI GTSAC 3 cut(s) 1049, 1399, 2009
NotI GCGGCCGC 1 cut(s) 168
NsiI ATGCAT 1 cut(s) 910
NspI RCATGY 1 cut(s) 974
NspV TTCGAA 1 cut(s) 2479
PagI TCATGA 2 cut(s) 814, 1594
PaqCI CACCTGC 1 cut(s) 1051
PauI GCGCGC 3 cut(s) 191, 193, 195
PciI ACATGT 1 cut(s) 970
PciSI GCTCTTC 1 cut(s) 2208
PfeI GAWTC 9 cut(s) 289, 673, 1096, 1211, 1772, 1995, 2303, 2399, 2516
PflMI CCANNNNNTGG 1 cut(s) 2363
PleI GAGTC 7 cut(s) 336, 706, 1113, 1462, 1585, 2216, 2720
PmaCI CACGTG 1 cut(s) 155
PmlI CACGTG 1 cut(s) 155
PpsI GAGTC 7 cut(s) 336, 706, 1113, 1462, 1585, 2216, 2720
Ppu21I YACGTR 1 cut(s) 155
PscI ACATGT 1 cut(s) 970
Psp124BI GAGCTC 3 cut(s) 236, 1425, 1711
Psp6I CCWGG 2 cut(s) 1023, 2298
PspCI CACGTG 1 cut(s) 155
PspFI CCCAGC 1 cut(s) 2758
PspGI CCWGG 2 cut(s) 1023, 2298
PspN4I GGNNCC 5 cut(s) 106, 324, 1363, 1864, 1917
PspOMI GGGCCC 1 cut(s) 104
PstI CTGCAG 2 cut(s) 1375, 1666
PsuI RGATCY 3 cut(s) 71, 635, 1915
PteI GCGCGC 3 cut(s) 191, 193, 195
RsaI GTAC 5 cut(s) 969, 1652, 1857, 2040, 2296
RsaNI GTAC 5 cut(s) 968, 1651, 1856, 2039, 2295
RseI CAYNNNNRTG 1 cut(s) 1599
SacI GAGCTC 3 cut(s) 236, 1425, 1711
SacII CCGCGG 1 cut(s) 37
SalI GTCGAC 1 cut(s) 158
SapI GCTCTTC 1 cut(s) 2208
SaqAI TTAA 1 cut(s) 2054
SbfI CCTGCAGG 1 cut(s) 1666
ScaI AGTACT 1 cut(s) 1857
SchI GAGTC 7 cut(s) 337, 707, 1113, 1463, 1586, 2216, 2720
ScrFI CCNGG 5 cut(s) 102, 103, 333, 1025, 2300
SdaI CCTGCAGG 1 cut(s) 1666
SduI GDGCHC 6 cut(s) 108, 236, 1425, 1613, 1711, 2737
SfaNI GCATC 7 cut(s) 178, 275, 895, 917, 1175, 1760, 2602
SfcI CTRYAG 3 cut(s) 1263, 1371, 1662
Sfr303I CCGCGG 1 cut(s) 37
SfuI TTCGAA 1 cut(s) 2479
SgrBI CCGCGG 1 cut(s) 37
SinI GGWCC 3 cut(s) 204, 323, 1952
SmaI CCCGGG 1 cut(s) 103
SmiMI CAYNNNNRTG 1 cut(s) 1599
SmlI CTYRAG 3 cut(s) 1299, 2068, 2550
SmoI CTYRAG 3 cut(s) 1299, 2068, 2550
SrfI GCCCGGGC 1 cut(s) 103
Sse8387I CCTGCAGG 1 cut(s) 1666
Sse9I AATT 8 cut(s) 434, 477, 541, 592, 1257, 1336, 2124, 2475
SspMI CTAG 8 cut(s) 237, 561, 804, 1116, 1509, 1713, 2318, 2573
SstI GAGCTC 3 cut(s) 236, 1425, 1711
StyD4I CCNGG 5 cut(s) 100, 101, 331, 1023, 2298
StyI CCWWGG 3 cut(s) 963, 1281, 2410
TaaI ACNGT 8 cut(s) 1049, 1234, 1855, 2015, 2379, 2448, 2469, 2630
TaiI ACGT 1 cut(s) 157
TaqI TCGA 7 cut(s) 159, 315, 676, 701, 784, 911, 2479
TasI AATT 8 cut(s) 434, 477, 541, 592, 1257, 1336, 2124, 2475
TatI WGTACW 2 cut(s) 1650, 1855
TauI GCSGC 9 cut(s) 24, 39, 42, 50, 145, 170, 173, 186, 266
TfiI GAWTC 9 cut(s) 289, 673, 1096, 1211, 1772, 1995, 2303, 2399, 2516
Tru1I TTAA 1 cut(s) 2054
Tru9I TTAA 1 cut(s) 2054
TscAI CASTG 5 cut(s) 1239, 1375, 1408, 2087, 2224
TseFI GTSAC 3 cut(s) 1049, 1399, 2009
TseI GCWGC 2 cut(s) 1748, 2415
Tsp45I GTSAC 3 cut(s) 1049, 1399, 2009
TspDTI ATGAA 6 cut(s) 803, 908, 1239, 1455, 2042, 2195
TspGWI ACGGA 1 cut(s) 2322
TspMI CCCGGG 1 cut(s) 101
TspRI CASTG 5 cut(s) 1239, 1375, 1408, 2087, 2224
Van91I CCANNNNNTGG 1 cut(s) 2363
VneI GTGCAC 1 cut(s) 1609
VpaK11BI GGWCC 3 cut(s) 204, 323, 1952
XagI CCTNNNNNAGG 1 cut(s) 1662
XapI RAATTY 1 cut(s) 541
XbaI TCTAGA 1 cut(s) 2317
XceI RCATGY 1 cut(s) 974
XcmI CCANNNNNNNNNTGG 2 cut(s) 214, 1829
XmaI CCCGGG 1 cut(s) 101
XmiI GTMKAC 1 cut(s) 159
XspI CTAG 8 cut(s) 237, 561, 804, 1116, 1509, 1713, 2318, 2573
ZrmI AGTACT 1 cut(s) 1857
Zsp2I ATGCAT 1 cut(s) 910
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.