Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0030561.1

Orthogroup ID

OG0007851

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 741

Gene Structure 740 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0030561.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 740 bp

atgtccgccttatccgctcgccgcctcaaagaccgcggcggcgtcgccgcacccaccaaacccgaaaggagatcctccagcgtcggcaaagaaaacccgcccgggcccactttccggacttcggcccagaagcccaccatgaggcccgttccacgtgtcgacaaggcggcggcgaataccggcggcgatgcgcgcgcgcggtggtccatgccttctgtggcgaaaggtaggagctctagcccttctgagttttttagggttgccgcgtcgggaaatgttgggccgaagaatcggaggggttcggcggatcgggtcgagaggggtccgagtccgggttcgggttcgggtgagagggaacggtccgggagtgcagggaggagtttgagtagggggagaggatcaggggttagggatttggaagtcaaagttggtcaactgggggttagggttttcagggatttgaaagatgatggtaaaattggggtgaaaaggaatggaacttgtggaggactggaagtgaaatcggtggagattgagaagaattggagtggggttaggtctagggttttgggcagttgtgatggagtagctaatttgaaaaactcagatggggttgatggtagggttttggagagatgcaatagtggaaagagtagaagcagtgatattgggaatcgggctggtttgggattgaaggagtcgagtgagaaatgtgtgagcaatgggaaggttttggaggg

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005618 GO:0005623 GO:0030312 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

247

Amino Acids

25.87

Weight (kDa)

10.88

Isoelectric Point (pI)

46.76

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007851)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G14310 AT4G14310
fragaria_vesca	FvH4_4g04020 FvH4_4g04020
malus_domestica	MD13G1216600.v1.1 MD16G1222000.v1.1
prunus_persica	Prupe.1G042300_v2.0.a1 Prupe.1G042300_v2.0.a1 Prupe.1G042300_v2.0.a1
pyrus_communis	pycom13g19000 pycom16g18610
rosa_chinensis	RchiOBHm_Chr4g0394291
rosa_laevigata	RLG00000009707
rosa_multiflora	Rmu_sc0007246.1_g000001 Rmu_sc0024365.1_g000001 Rmu_sc0027792.1_g000001 Rmu_sc0030561.1_g000001
rosa_roxburghii	Rroxscaffold_5G00339320
rosa_rugosa	Rorug03G0367900.1
rosa_samantha	Rh4AG051400 Rh4BG048600 Rh4CG055300 Rh4DG048300
rosa_wichuraiana	Rw4G004100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	17
AccI	GTMKAC	1 cut(s)	159
AccII	CGCG	6 cut(s)	36, 193, 195, 197, 199, 266
AccIII	TCCGGA	1 cut(s)	114
AclWI	GGATC	3 cut(s)	66, 315, 406
AcvI	CACGTG	1 cut(s)	155
AcyI	GRCGYC	1 cut(s)	42
AfiI	CCNNNNNNNGG	5 cut(s)	114, 121, 141, 332, 338
AflIII	ACRYGT	1 cut(s)	154
AgsI	TTSAA	3 cut(s)	463, 598, 694
AjuI	GAANNNNNNNTTGG	2 cut(s)	411, 443
AluBI	AGCT	2 cut(s)	234, 590
AluI	AGCT	2 cut(s)	234, 590
Alw21I	GWGCWC	1 cut(s)	236
AlwI	GGATC	3 cut(s)	66, 315, 406
Ama87I	CYCGRG	1 cut(s)	101
Aor13HI	TCCGGA	1 cut(s)	114
AoxI	GGCC	4 cut(s)	104, 123, 143, 281
ApaI	GGGCCC	1 cut(s)	108
AspLEI	GCGC	4 cut(s)	193, 195, 197, 199
AspS9I	GGNCC	8 cut(s)	104, 105, 124, 144, 204, 281, 323, 360
AsuC2I	CCSGG	4 cut(s)	102, 103, 333, 364
AsuHPI	GGTGA	2 cut(s)	359, 496
AvaI	CYCGRG	1 cut(s)	101
AvaII	GGWCC	3 cut(s)	204, 323, 360
BaeGI	GKGCMC	1 cut(s)	108
BanII	GRGCYC	2 cut(s)	108, 236
BbrPI	CACGTG	1 cut(s)	155
Bbv12I	GWGCWC	1 cut(s)	236
BccI	CCATC	4 cut(s)	464, 575, 602, 611
BcnI	CCSGG	4 cut(s)	102, 103, 333, 364
BfaI	CTAG	2 cut(s)	237, 561
BisI	GCNGC	8 cut(s)	22, 37, 40, 48, 168, 171, 184, 264
BlsI	GCNGC	8 cut(s)	23, 38, 41, 49, 169, 172, 185, 265
Bme1390I	CCNGG	4 cut(s)	102, 103, 333, 364
Bme18I	GGWCC	3 cut(s)	204, 323, 360
BmeT110I	CYCGRG	1 cut(s)	101
BmgT120I	GGNCC	8 cut(s)	104, 105, 124, 144, 204, 281, 323, 360
BmiI	GGNNCC	2 cut(s)	106, 324
BmrFI	CCNGG	4 cut(s)	102, 103, 333, 364
BmrI	ACTGGG	1 cut(s)	446
BmsI	GCATC	2 cut(s)	178, 626
BmuI	ACTGGG	1 cut(s)	446
BpmI	CTGGAG	1 cut(s)	61
BpuMI	CCSGG	4 cut(s)	102, 103, 333, 364
BsaAI	YACGTR	1 cut(s)	155
BsaHI	GRCGYC	1 cut(s)	42
BsaJI	CCNNGG	2 cut(s)	34, 101
BsaWI	WCCGGW	1 cut(s)	114
BsaXI	ACNNNNNCTCC	2 cut(s)	370, 400
Bsc4I	CCNNNNNNNGG	5 cut(s)	114, 121, 141, 332, 338
Bse118I	RCCGGY	1 cut(s)	179
Bse1I	ACTGG	2 cut(s)	441, 516
Bse3DI	GCAATG	1 cut(s)	727
BseAI	TCCGGA	1 cut(s)	114
BseDI	CCNNGG	2 cut(s)	34, 101
BseLI	CCNNNNNNNGG	5 cut(s)	114, 121, 141, 332, 338
BseMI	GCAATG	1 cut(s)	727
BseMII	CTCAG	2 cut(s)	237, 618
BseNI	ACTGG	2 cut(s)	441, 516
BsePI	GCGCGC	3 cut(s)	191, 193, 195
BseRI	GAGGAG	1 cut(s)	391
BseSI	GKGCMC	1 cut(s)	108
BsgI	GTGCAG	1 cut(s)	390
Bsh1236I	CGCG	6 cut(s)	36, 193, 195, 197, 199, 266
BshFI	GGCC	4 cut(s)	106, 125, 145, 283
BsiHKAI	GWGCWC	1 cut(s)	236
BsiHKCI	CYCGRG	1 cut(s)	101
BsiSI	CCGG	5 cut(s)	102, 115, 180, 332, 363
BslI	CCNNNNNNNGG	5 cut(s)	114, 121, 141, 332, 338
BsnI	GGCC	4 cut(s)	106, 125, 145, 283
BsoBI	CYCGRG	1 cut(s)	101
Bsp120I	GGGCCC	1 cut(s)	104
Bsp1286I	GDGCHC	2 cut(s)	108, 236
Bsp13I	TCCGGA	1 cut(s)	114
Bsp143I	GATC	3 cut(s)	71, 307, 398
BspANI	GGCC	4 cut(s)	106, 125, 145, 283
BspCNI	CTCAG	2 cut(s)	238, 617
BspEI	TCCGGA	1 cut(s)	114
BspFNI	CGCG	6 cut(s)	36, 193, 195, 197, 199, 266
BspLI	GGNNCC	2 cut(s)	106, 324
BspPI	GGATC	3 cut(s)	66, 315, 406
BsrBI	CCGCTC	1 cut(s)	17
BsrDI	GCAATG	1 cut(s)	727
BsrFI	RCCGGY	1 cut(s)	179
BsrI	ACTGG	2 cut(s)	441, 516
BssAI	RCCGGY	1 cut(s)	179
BssECI	CCNNGG	2 cut(s)	34, 101
BssHII	GCGCGC	3 cut(s)	191, 193, 195
BssMI	GATC	3 cut(s)	71, 307, 398
BssNI	GRCGYC	1 cut(s)	42
Bst4CI	ACNGT	1 cut(s)	360
BstACI	GRCGYC	1 cut(s)	42
BstBAI	YACGTR	1 cut(s)	155
BstC8I	GCNNGC	4 cut(s)	19, 193, 195, 197
BstDEI	CTNAG	2 cut(s)	246, 604
BstDSI	CCRYGG	1 cut(s)	34
BstFNI	CGCG	6 cut(s)	36, 193, 195, 197, 199, 266
BstHHI	GCGC	4 cut(s)	193, 195, 197, 199
BstKTI	GATC	3 cut(s)	74, 310, 401
BstMBI	GATC	3 cut(s)	71, 307, 398
BstMWI	GCNNNNNNNGC	2 cut(s)	14, 192
BstSCI	CCNGG	4 cut(s)	100, 101, 331, 362
BstSLI	GKGCMC	1 cut(s)	108
BstUI	CGCG	6 cut(s)	36, 193, 195, 197, 199, 266
BstX2I	RGATCY	1 cut(s)	71
BstYI	RGATCY	1 cut(s)	71
BsuRI	GGCC	4 cut(s)	106, 125, 145, 283
BtgI	CCRYGG	1 cut(s)	34
BtgZI	GCGATG	1 cut(s)	201
BtsI	GCAGTG	1 cut(s)	667
BtsIMutI	CAGTG	1 cut(s)	667
Cac8I	GCNNGC	4 cut(s)	19, 193, 195, 197
CfoI	GCGC	4 cut(s)	193, 195, 197, 199
Cfr10I	RCCGGY	1 cut(s)	179
Cfr13I	GGNCC	8 cut(s)	104, 105, 124, 144, 204, 281, 323, 360
Cfr42I	CCGCGG	1 cut(s)	37
Cfr9I	CCCGGG	1 cut(s)	101
CpoI	CGGWCCG	1 cut(s)	360
CseI	GACGC	3 cut(s)	31, 70, 255
CspI	CGGWCCG	1 cut(s)	360
CviAII	CATG	2 cut(s)	139, 208
CviJI	RGCY	9 cut(s)	106, 125, 133, 145, 234, 240, 283, 590, 680
CviKI_1	RGCY	9 cut(s)	106, 125, 133, 145, 234, 240, 283, 590, 680
DdeI	CTNAG	2 cut(s)	246, 604
DpnI	GATC	3 cut(s)	73, 309, 400
DpnII	GATC	3 cut(s)	71, 307, 398
EciI	GGCGGA	1 cut(s)	320
Ecl136II	GAGCTC	1 cut(s)	234
Eco24I	GRGCYC	2 cut(s)	108, 236
Eco47I	GGWCC	3 cut(s)	204, 323, 360
Eco53kI	GAGCTC	1 cut(s)	234
Eco72I	CACGTG	1 cut(s)	155
Eco88I	CYCGRG	1 cut(s)	101
EcoICRI	GAGCTC	1 cut(s)	234
EcoT38I	GRGCYC	2 cut(s)	108, 236
FaeI	CATG	2 cut(s)	142, 211
FaiI	YATR	2 cut(s)	140, 209
FatI	CATG	2 cut(s)	138, 207
FauI	CCCGC	1 cut(s)	105
FblI	GTMKAC	1 cut(s)	159
Fnu4HI	GCNGC	8 cut(s)	22, 37, 40, 48, 168, 171, 184, 264
FriOI	GRGCYC	2 cut(s)	108, 236
Fsp4HI	GCNGC	8 cut(s)	22, 37, 40, 48, 168, 171, 184, 264
FspBI	CTAG	2 cut(s)	237, 561
GlaI	GCGC	4 cut(s)	192, 194, 196, 198
GluI	GCNGC	8 cut(s)	22, 37, 40, 48, 168, 171, 184, 264
GsuI	CTGGAG	1 cut(s)	61
HaeIII	GGCC	4 cut(s)	106, 125, 145, 283
HapII	CCGG	5 cut(s)	102, 115, 180, 332, 363
HgaI	GACGC	3 cut(s)	31, 70, 255
HhaI	GCGC	4 cut(s)	193, 195, 197, 199
Hin1I	GRCGYC	1 cut(s)	42
Hin1II	CATG	2 cut(s)	142, 211
Hin6I	GCGC	4 cut(s)	191, 193, 195, 197
HinP1I	GCGC	4 cut(s)	191, 193, 195, 197
HincII	GTYRAC	2 cut(s)	160, 434
HindII	GTYRAC	2 cut(s)	160, 434
HinfI	GANTC	4 cut(s)	289, 328, 673, 698
HpaII	CCGG	5 cut(s)	102, 115, 180, 332, 363
HphI	GGTGA	2 cut(s)	359, 496
Hpy166II	GTNNAC	2 cut(s)	160, 434
Hpy188I	TCNGA	4 cut(s)	247, 294, 327, 607
Hpy188III	TCNNGA	3 cut(s)	115, 270, 316
Hpy8I	GTNNAC	2 cut(s)	160, 434
Hpy99I	CGWCG	3 cut(s)	47, 86, 271
HpyAV	CCTTC	4 cut(s)	222, 252, 688, 721
HpyCH4III	ACNGT	1 cut(s)	360
HpyCH4IV	ACGT	1 cut(s)	154
HpyCH4V	TGCA	2 cut(s)	371, 639
HpyF10VI	GCNNNNNNNGC	2 cut(s)	14, 192
HpyF3I	CTNAG	2 cut(s)	246, 604
HpySE526I	ACGT	1 cut(s)	154
Hsp92I	GRCGYC	1 cut(s)	42
Hsp92II	CATG	2 cut(s)	142, 211
HspAI	GCGC	4 cut(s)	191, 193, 195, 197
Kpn2I	TCCGGA	1 cut(s)	114
KspI	CCGCGG	1 cut(s)	37
Kzo9I	GATC	3 cut(s)	71, 307, 398
LmnI	GCTCC	1 cut(s)	231
LweI	GCATC	2 cut(s)	178, 626
MaeI	CTAG	2 cut(s)	237, 561
MaeII	ACGT	1 cut(s)	154
MalI	GATC	3 cut(s)	73, 309, 400
MauBI	CGCGCGCG	2 cut(s)	193, 195
MbiI	CCGCTC	1 cut(s)	17
MboI	GATC	3 cut(s)	71, 307, 398
MboII	GAAGA	2 cut(s)	298, 550
MflI	RGATCY	1 cut(s)	71
MhlI	GDGCHC	2 cut(s)	108, 236
MluCI	AATT	3 cut(s)	477, 541, 592
MlyI	GAGTC	2 cut(s)	337, 707
MroI	TCCGGA	1 cut(s)	114
MspA1I	CMGCKG	1 cut(s)	36
MspI	CCGG	5 cut(s)	102, 115, 180, 332, 363
MspR9I	CCNGG	4 cut(s)	102, 103, 333, 364
MvnI	CGCG	6 cut(s)	36, 193, 195, 197, 199, 266
MwoI	GCNNNNNNNGC	2 cut(s)	14, 192
NciI	CCSGG	4 cut(s)	102, 103, 333, 364
NdeII	GATC	3 cut(s)	71, 307, 398
NlaIII	CATG	2 cut(s)	142, 211
NlaIV	GGNNCC	2 cut(s)	106, 324
PauI	GCGCGC	3 cut(s)	191, 193, 195
PfeI	GAWTC	2 cut(s)	289, 673
PfoI	TCCNGGA	1 cut(s)	362
PkrI	GCNGC	8 cut(s)	23, 38, 41, 49, 169, 172, 185, 265
PleI	GAGTC	2 cut(s)	336, 706
PmaCI	CACGTG	1 cut(s)	155
PmlI	CACGTG	1 cut(s)	155
PpsI	GAGTC	2 cut(s)	336, 706
Ppu21I	YACGTR	1 cut(s)	155
Psp124BI	GAGCTC	1 cut(s)	236
PspCI	CACGTG	1 cut(s)	155
PspN4I	GGNNCC	2 cut(s)	106, 324
PspOMI	GGGCCC	1 cut(s)	104
PspPI	GGNCC	8 cut(s)	104, 105, 124, 144, 204, 281, 323, 360
PsuI	RGATCY	1 cut(s)	71
PteI	GCGCGC	3 cut(s)	191, 193, 195
Rsr2I	CGGWCCG	1 cut(s)	360
RsrII	CGGWCCG	1 cut(s)	360
SacI	GAGCTC	1 cut(s)	236
SacII	CCGCGG	1 cut(s)	37
SalI	GTCGAC	1 cut(s)	158
SatI	GCNGC	8 cut(s)	22, 37, 40, 48, 168, 171, 184, 264
Sau3AI	GATC	3 cut(s)	71, 307, 398
Sau96I	GGNCC	8 cut(s)	104, 105, 124, 144, 204, 281, 323, 360
SchI	GAGTC	2 cut(s)	337, 707
ScrFI	CCNGG	4 cut(s)	102, 103, 333, 364
SduI	GDGCHC	2 cut(s)	108, 236
SetI	ASST	6 cut(s)	157, 229, 236, 560, 592, 732
SfaNI	GCATC	2 cut(s)	178, 626
Sfr303I	CCGCGG	1 cut(s)	37
SgrBI	CCGCGG	1 cut(s)	37
SinI	GGWCC	3 cut(s)	204, 323, 360
SmaI	CCCGGG	1 cut(s)	103
SrfI	GCCCGGGC	1 cut(s)	103
Sse9I	AATT	3 cut(s)	477, 541, 592
SspMI	CTAG	2 cut(s)	237, 561
SstI	GAGCTC	1 cut(s)	236
StyD4I	CCNGG	4 cut(s)	100, 101, 331, 362
TaaI	ACNGT	1 cut(s)	360
TaiI	ACGT	1 cut(s)	157
TaqI	TCGA	3 cut(s)	159, 315, 701
TasI	AATT	3 cut(s)	477, 541, 592
TauI	GCSGC	8 cut(s)	24, 39, 42, 50, 170, 173, 186, 266
TfiI	GAWTC	2 cut(s)	289, 673
TscAI	CASTG	1 cut(s)	667
TspMI	CCCGGG	1 cut(s)	101
TspRI	CASTG	1 cut(s)	667
VpaK11BI	GGWCC	3 cut(s)	204, 323, 360
XcmI	CCANNNNNNNNNTGG	1 cut(s)	214
XmaI	CCCGGG	1 cut(s)	101
XmiI	GTMKAC	1 cut(s)	159
XspI	CTAG	2 cut(s)	237, 561

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.