RchiOBHm_Chr4g0399501

No description available

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
Physical Location & Seq
Forward (+)
16814245 .. 16819937
5693 bp
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UTR
Exon/CDS
Intron
PRQ37162

Sequence Viewer

Length: 369 bp
ATGCCATCGTTCTATAATAAGTCAAATACACGTAGATTTCTAGAGGAAGTACAGTCGCAACAGAGAGAGCGAGAAAGAGACCGAGAGAGAGTGGTGATTTCATTTTGCTGTGAAGGTTTGCCTGAGAAGTTTGGCTATACTTCTCGGTTCTTCTTCTTTTTGGAACTAACTGTTTCCAATAATATCTCCACACCGACATCGGCTCTTGCAGACTATCAAGAAGAAAAGAAAAGAAGAAGAGGAGGAGGAAGAGGAAGAAGAAGAAGAAGAAGAAGAGGGAGACGGGAAGAAACTGATCCTCAATTGGAACAAAAATTGAGTGAACTGATCATCCCAGGGGTATTGTTAGTGCTCCAGTTTGGGGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

122

Amino Acids

14.52

Weight (kDa)

10.37

Isoelectric Point (pI)

96.26

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 290
AfaI GTAC 1 cut(s) 51
AfiI CCNNNNNNNGG 1 cut(s) 361
AflIII ACRYGT 1 cut(s) 29
AjnI CCWGG 1 cut(s) 334
AloI GAACNNNNNNTCC 2 cut(s) 315, 347
Alw21I GWGCWC 1 cut(s) 354
Alw26I GTCTC 2 cut(s) 72, 274
AlwI GGATC 1 cut(s) 290
AsuHPI GGTGA 1 cut(s) 106
Bbv12I GWGCWC 1 cut(s) 354
BccI CCATC 1 cut(s) 13
BciT130I CCWGG 1 cut(s) 336
BclI TGATCA 1 cut(s) 327
BcoDI GTCTC 2 cut(s) 72, 274
BfaI CTAG 1 cut(s) 41
Bme1390I CCNGG 1 cut(s) 336
BmrFI CCNGG 1 cut(s) 336
BpmI CTGGAG 1 cut(s) 338
BsaAI YACGTR 1 cut(s) 32
BsaI GGTCTC 1 cut(s) 72
BsaJI CCNNGG 2 cut(s) 334, 335
Bsc4I CCNNNNNNNGG 1 cut(s) 361
Bse1I ACTGG 1 cut(s) 355
BseBI CCWGG 1 cut(s) 336
BseDI CCNNGG 2 cut(s) 334, 335
BseGI GGATG 1 cut(s) 330
BseLI CCNNNNNNNGG 1 cut(s) 361
BseMII CTCAG 1 cut(s) 114
BseNI ACTGG 1 cut(s) 355
BseRI GAGGAG 2 cut(s) 255, 258
BsiHKAI GWGCWC 1 cut(s) 354
BslI CCNNNNNNNGG 1 cut(s) 361
BsmAI GTCTC 2 cut(s) 72, 274
BsmBI CGTCTC 1 cut(s) 274
Bso31I GGTCTC 1 cut(s) 72
Bsp1286I GDGCHC 1 cut(s) 354
Bsp143I GATC 2 cut(s) 295, 327
BspCNI CTCAG 1 cut(s) 115
BspPI GGATC 1 cut(s) 290
BspTNI GGTCTC 1 cut(s) 72
BsrI ACTGG 1 cut(s) 355
BssECI CCNNGG 2 cut(s) 334, 335
BssMI GATC 2 cut(s) 295, 327
Bst2UI CCWGG 1 cut(s) 336
Bst4CI ACNGT 2 cut(s) 54, 172
Bst6I CTCTTC 3 cut(s) 232, 244, 268
BstBAI YACGTR 1 cut(s) 32
BstDEI CTNAG 1 cut(s) 123
BstF5I GGATG 1 cut(s) 330
BstKTI GATC 2 cut(s) 298, 330
BstMAI GTCTC 2 cut(s) 72, 274
BstMBI GATC 2 cut(s) 295, 327
BstNI CCWGG 1 cut(s) 336
BstSCI CCNGG 1 cut(s) 334
BtsCI GGATG 1 cut(s) 330
Csp6I GTAC 1 cut(s) 50
CviJI RGCY 2 cut(s) 135, 203
CviKI_1 RGCY 2 cut(s) 135, 203
CviQI GTAC 1 cut(s) 50
DdeI CTNAG 1 cut(s) 123
DpnI GATC 2 cut(s) 297, 329
DpnII GATC 2 cut(s) 295, 327
Eam1104I CTCTTC 3 cut(s) 232, 244, 268
EarI CTCTTC 3 cut(s) 232, 244, 268
Eco31I GGTCTC 1 cut(s) 72
EcoRII CCWGG 1 cut(s) 334
Esp3I CGTCTC 1 cut(s) 274
FaiI YATR 2 cut(s) 15, 138
FbaI TGATCA 1 cut(s) 327
FokI GGATG 1 cut(s) 317
FspBI CTAG 1 cut(s) 41
GsuI CTGGAG 1 cut(s) 338
HphI GGTGA 1 cut(s) 106
Hpy166II GTNNAC 1 cut(s) 323
Hpy188III TCNNGA 2 cut(s) 41, 218
Hpy8I GTNNAC 1 cut(s) 323
HpyAV CCTTC 1 cut(s) 107
HpyCH4III ACNGT 2 cut(s) 54, 172
HpyCH4IV ACGT 1 cut(s) 31
HpyCH4V TGCA 1 cut(s) 209
HpyF3I CTNAG 1 cut(s) 123
HpySE526I ACGT 1 cut(s) 31
Ksp22I TGATCA 1 cut(s) 327
Kzo9I GATC 2 cut(s) 295, 327
LmnI GCTCC 1 cut(s) 357
LpnPI CCDG 3 cut(s) 135, 321, 348
MaeI CTAG 1 cut(s) 41
MaeII ACGT 1 cut(s) 31
MalI GATC 2 cut(s) 297, 329
MboI GATC 2 cut(s) 295, 327
MfeI CAATTG 1 cut(s) 302
MhlI GDGCHC 1 cut(s) 354
MluCI AATT 2 cut(s) 302, 314
MnlI CCTC 7 cut(s) 37, 233, 236, 239, 245, 269, 309
MspR9I CCNGG 1 cut(s) 336
MunI CAATTG 1 cut(s) 302
MvaI CCWGG 1 cut(s) 336
NdeII GATC 2 cut(s) 295, 327
PasI CCCWGGG 1 cut(s) 335
Ppu21I YACGTR 1 cut(s) 32
Psp6I CCWGG 1 cut(s) 334
PspGI CCWGG 1 cut(s) 334
RsaI GTAC 1 cut(s) 51
RsaNI GTAC 1 cut(s) 50
Sau3AI GATC 2 cut(s) 295, 327
ScrFI CCNGG 1 cut(s) 336
SduI GDGCHC 1 cut(s) 354
SetI ASST 2 cut(s) 34, 118
Sse9I AATT 2 cut(s) 302, 314
SspMI CTAG 1 cut(s) 41
StyD4I CCNGG 1 cut(s) 334
TaaI ACNGT 2 cut(s) 54, 172
TaiI ACGT 1 cut(s) 34
TaqII GACCGA 1 cut(s) 96
TasI AATT 2 cut(s) 302, 314
TatI WGTACW 1 cut(s) 49
TspDTI ATGAA 1 cut(s) 90
XbaI TCTAGA 1 cut(s) 40
XspI CTAG 1 cut(s) 41
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.