RLG00000022818

No description available

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr5
Physical Location & Seq
Reverse (-)
12698323 .. 12699166
844 bp
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UTR
Exon/CDS
Intron
RLM00000022818

Sequence Viewer

Length: 363 bp
ATGGCGTGGATGGTTGAGAATGATATTGAGGTCTGGTTCGAAACAGAGTATGTGAGATATGGGCTTCCCCGGACAAGAATGAATGTGAGATTGGAGGAAGGGAAGTCGAGGGTGACACCATTACACCAACAACGACCGGTGTTGCCTGAGAAGTTCGGCTATAATTCTGGGTTCTTCTTCTTTTTGGAAGTATCTGTTTTCACTATCTCCACACCGACATCGGTTCTTGCAGACTGTCAATGTGAAGAAGAGGAGGAGGAGGAGGAAGAAGAAGAAGAAGAGGGAGACGGGAAGAAGTTGTCGCTCGATTCGAACAAATCATCTCAGGGGTATTGTTCCTGCTGCAGTTTAGGGTTTGAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

121

Amino Acids

13.9

Weight (kDa)

4.37

Isoelectric Point (pI)

65.91

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AgeI ACCGGT 1 cut(s) 136
AjuI GAANNNNNNNTTGG 2 cut(s) 74, 106
Alw26I GTCTC 1 cut(s) 279
ApeKI GCWGC 1 cut(s) 342
AsiGI ACCGGT 1 cut(s) 136
AsuC2I CCSGG 1 cut(s) 70
AsuHPI GGTGA 1 cut(s) 124
AsuII TTCGAA 2 cut(s) 39, 311
BbvI GCAGC 1 cut(s) 329
BccI CCATC 1 cut(s) 4
BcnI CCSGG 1 cut(s) 70
BcoDI GTCTC 1 cut(s) 279
BfmI CTRYAG 1 cut(s) 343
BisI GCNGC 1 cut(s) 343
BlsI GCNGC 1 cut(s) 344
Bme1390I CCNGG 1 cut(s) 70
BmrFI CCNGG 1 cut(s) 70
Bpu14I TTCGAA 2 cut(s) 39, 311
BpuMI CCSGG 1 cut(s) 70
BsaJI CCNNGG 1 cut(s) 68
BsaWI WCCGGW 1 cut(s) 136
Bse118I RCCGGY 1 cut(s) 136
BseDI CCNNGG 1 cut(s) 68
BseGI GGATG 1 cut(s) 15
BseMII CTCAG 2 cut(s) 138, 338
BseRI GAGGAG 4 cut(s) 266, 269, 272, 275
BseXI GCAGC 1 cut(s) 329
Bsh1285I CGRYCG 1 cut(s) 137
BshTI ACCGGT 1 cut(s) 136
BsiEI CGRYCG 1 cut(s) 137
BsiSI CCGG 2 cut(s) 70, 137
BsmAI GTCTC 1 cut(s) 279
BsmBI CGTCTC 1 cut(s) 279
Bsp119I TTCGAA 2 cut(s) 39, 311
BspCNI CTCAG 2 cut(s) 139, 337
BspMAI CTGCAG 1 cut(s) 347
BspT104I TTCGAA 2 cut(s) 39, 311
BsrFI RCCGGY 1 cut(s) 136
BssAI RCCGGY 1 cut(s) 136
BssECI CCNNGG 1 cut(s) 68
Bst4CI ACNGT 1 cut(s) 236
Bst6I CTCTTC 2 cut(s) 243, 273
BstBI TTCGAA 2 cut(s) 39, 311
BstDEI CTNAG 2 cut(s) 147, 324
BstF5I GGATG 1 cut(s) 15
BstMAI GTCTC 1 cut(s) 279
BstMCI CGRYCG 1 cut(s) 137
BstSCI CCNGG 1 cut(s) 68
BstSFI CTRYAG 1 cut(s) 343
BstV1I GCAGC 1 cut(s) 329
BtsCI GGATG 1 cut(s) 15
Cfr10I RCCGGY 1 cut(s) 136
CspAI ACCGGT 1 cut(s) 136
CviJI RGCY 2 cut(s) 64, 159
CviKI_1 RGCY 2 cut(s) 64, 159
DdeI CTNAG 2 cut(s) 147, 324
Eam1104I CTCTTC 2 cut(s) 243, 273
EarI CTCTTC 2 cut(s) 243, 273
Esp3I CGTCTC 1 cut(s) 279
FaiI YATR 3 cut(s) 51, 60, 162
Fnu4HI GCNGC 1 cut(s) 343
FokI GGATG 1 cut(s) 22
Fsp4HI GCNGC 1 cut(s) 343
GluI GCNGC 1 cut(s) 343
HapII CCGG 2 cut(s) 70, 137
HinfI GANTC 1 cut(s) 308
HpaII CCGG 2 cut(s) 70, 137
HphI GGTGA 1 cut(s) 124
HpyAV CCTTC 1 cut(s) 92
HpyCH4III ACNGT 1 cut(s) 236
HpyCH4V TGCA 2 cut(s) 230, 345
HpyF3I CTNAG 2 cut(s) 147, 324
LpnPI CCDG 7 cut(s) 19, 83, 150, 153, 159, 311, 352
Lsp1109I GCAGC 1 cut(s) 329
MaeIII GTNAC 1 cut(s) 112
MluCI AATT 1 cut(s) 163
MnlI CCTC 9 cut(s) 22, 88, 102, 244, 247, 250, 253, 256, 274
MspI CCGG 2 cut(s) 70, 137
MspR9I CCNGG 1 cut(s) 70
NciI CCSGG 1 cut(s) 70
NmuCI GTSAC 1 cut(s) 112
NspV TTCGAA 2 cut(s) 39, 311
PcsI WCGNNNNNNNCGW 1 cut(s) 308
PfeI GAWTC 1 cut(s) 308
PinAI ACCGGT 1 cut(s) 136
PkrI GCNGC 1 cut(s) 344
PstI CTGCAG 1 cut(s) 347
SatI GCNGC 1 cut(s) 343
ScrFI CCNGG 1 cut(s) 70
SetI ASST 1 cut(s) 33
SfcI CTRYAG 1 cut(s) 343
SfuI TTCGAA 2 cut(s) 39, 311
Sse9I AATT 1 cut(s) 163
StyD4I CCNGG 1 cut(s) 68
TaaI ACNGT 1 cut(s) 236
TaqI TCGA 4 cut(s) 39, 107, 306, 311
TasI AATT 1 cut(s) 163
TfiI GAWTC 1 cut(s) 308
TseFI GTSAC 1 cut(s) 112
TseI GCWGC 1 cut(s) 342
Tsp45I GTSAC 1 cut(s) 112
TspDTI ATGAA 1 cut(s) 95
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.