Rmu_sc0006531.1_g000002

No description available

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0006531.1
Physical Location & Seq
Forward (+)
1973 .. 2509
537 bp
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UTR
Exon/CDS
Intron
Rmu_sc0006531.1_g000002.1.cds

Sequence Viewer

Length: 390 bp
atggaagtccggttcgaaatagagcaggtgagaaatgggcttccccggacgagaaagaatctgagattggaggaggaaaactccagagtgatgctgagatcattgaaagaagaaattacatgtctttcttgtgggttttgggtgtttgagatggtgaggtcagcgttgaagacttggtacaagaaagcagagttggagaatcgagatggggtcaagttttggaagaaagagtttttggggagtggggttttgaggaggttttgggagaagaaaggagaagggtcagggaggactgtggattgggtttgggggaagaggaaagggatggtggtgatggagatggggaaggtggaggtggaggtttatagggtttggatttgggtttcttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

129

Amino Acids

15.51

Weight (kDa)

9.73

Isoelectric Point (pI)

36.86

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 16
Acc36I ACCTGC 1 cut(s) 16
AfaI GTAC 1 cut(s) 179
AflIII ACRYGT 1 cut(s) 119
AgsI TTSAA 2 cut(s) 106, 169
AjuI GAANNNNNNNTTGG 6 cut(s) 50, 82, 176, 208, 218, 250
AloI GAACNNNNNNTCC 1 cut(s) 28
AsuC2I CCSGG 1 cut(s) 46
AsuHPI GGTGA 3 cut(s) 40, 166, 343
AsuII TTCGAA 1 cut(s) 15
BarI GAAGNNNNNNTAC 2 cut(s) 161, 193
BbsI GAAGAC 1 cut(s) 176
BccI CCATC 5 cut(s) 145, 200, 319, 328, 334
BcnI CCSGG 1 cut(s) 46
BfuAI ACCTGC 1 cut(s) 16
Bme1390I CCNGG 1 cut(s) 46
BmrFI CCNGG 1 cut(s) 46
BmsI GCATC 1 cut(s) 81
BpiI GAAGAC 1 cut(s) 176
BplI GAGNNNNNCTC 2 cut(s) 65, 97
BpmI CTGGAG 1 cut(s) 67
Bpu14I TTCGAA 1 cut(s) 15
BpuMI CCSGG 1 cut(s) 46
BsaJI CCNNGG 1 cut(s) 44
BsaWI WCCGGW 1 cut(s) 9
BseDI CCNNGG 1 cut(s) 44
BseGI GGATG 1 cut(s) 330
BseMII CTCAG 2 cut(s) 53, 86
BseRI GAGGAG 2 cut(s) 86, 268
BsiSI CCGG 2 cut(s) 10, 46
Bsp119I TTCGAA 1 cut(s) 15
Bsp143I GATC 1 cut(s) 98
BspCNI CTCAG 2 cut(s) 54, 87
BspMI ACCTGC 1 cut(s) 16
BspT104I TTCGAA 1 cut(s) 15
BssECI CCNNGG 1 cut(s) 44
BssMI GATC 1 cut(s) 98
Bst4CI ACNGT 1 cut(s) 295
Bst6I CTCTTC 1 cut(s) 308
BstBI TTCGAA 1 cut(s) 15
BstDEI CTNAG 2 cut(s) 62, 95
BstF5I GGATG 1 cut(s) 330
BstKTI GATC 1 cut(s) 101
BstMBI GATC 1 cut(s) 98
BstNSI RCATGY 1 cut(s) 123
BstSCI CCNGG 1 cut(s) 44
BstV2I GAAGAC 1 cut(s) 176
BtsCI GGATG 1 cut(s) 330
BveI ACCTGC 1 cut(s) 16
Csp6I GTAC 1 cut(s) 178
CviAII CATG 1 cut(s) 120
CviJI RGCY 1 cut(s) 40
CviKI_1 RGCY 1 cut(s) 40
CviQI GTAC 1 cut(s) 178
DdeI CTNAG 2 cut(s) 62, 95
DpnI GATC 1 cut(s) 100
DpnII GATC 1 cut(s) 98
Eam1104I CTCTTC 1 cut(s) 308
EarI CTCTTC 1 cut(s) 308
FaeI CATG 1 cut(s) 123
FaiI YATR 2 cut(s) 121, 366
FatI CATG 1 cut(s) 119
FokI GGATG 1 cut(s) 337
GsuI CTGGAG 1 cut(s) 67
HapII CCGG 2 cut(s) 10, 46
Hin1II CATG 1 cut(s) 123
HinfI GANTC 2 cut(s) 58, 199
HpaII CCGG 2 cut(s) 10, 46
HphI GGTGA 3 cut(s) 40, 166, 343
Hpy188I TCNGA 1 cut(s) 63
Hpy188III TCNNGA 3 cut(s) 84, 203, 387
HpyAV CCTTC 2 cut(s) 272, 340
HpyCH4III ACNGT 1 cut(s) 295
HpyF3I CTNAG 2 cut(s) 62, 95
Hsp92II CATG 1 cut(s) 123
Kzo9I GATC 1 cut(s) 98
LpnPI CCDG 5 cut(s) 11, 23, 59, 97, 270
LweI GCATC 1 cut(s) 81
MalI GATC 1 cut(s) 100
MboI GATC 1 cut(s) 98
MboII GAAGA 5 cut(s) 122, 181, 235, 280, 325
MluCI AATT 1 cut(s) 114
MmeI TCCRAC 1 cut(s) 174
MnlI CCTC 9 cut(s) 64, 67, 150, 246, 249, 282, 309, 346, 352
MspI CCGG 2 cut(s) 10, 46
MspR9I CCNGG 1 cut(s) 46
NciI CCSGG 1 cut(s) 46
NdeII GATC 1 cut(s) 98
NlaIII CATG 1 cut(s) 123
NspI RCATGY 1 cut(s) 123
NspV TTCGAA 1 cut(s) 15
PaqCI CACCTGC 1 cut(s) 16
PciI ACATGT 1 cut(s) 119
PfeI GAWTC 2 cut(s) 58, 199
PscI ACATGT 1 cut(s) 119
RsaI GTAC 1 cut(s) 179
RsaNI GTAC 1 cut(s) 178
Sau3AI GATC 1 cut(s) 98
ScrFI CCNGG 1 cut(s) 46
SetI ASST 6 cut(s) 30, 161, 260, 351, 357, 363
SfaNI GCATC 1 cut(s) 81
SfuI TTCGAA 1 cut(s) 15
Sse9I AATT 1 cut(s) 114
StyD4I CCNGG 1 cut(s) 44
TaaI ACNGT 1 cut(s) 295
TaqI TCGA 2 cut(s) 15, 202
TasI AATT 1 cut(s) 114
TfiI GAWTC 2 cut(s) 58, 199
XceI RCATGY 1 cut(s) 123
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.