RchiOBHm_Chr7g0216271

No description available

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
Physical Location & Seq
Reverse (-)
33850764 .. 33862454
11691 bp
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UTR
Exon/CDS
Intron
PRQ19350

Sequence Viewer

Length: 372 bp
ATGCCATCGTTCTATAATAAGTCAAATACACGTAGATTTCTAGAGGAAGTACAGTCGAAACAGAGAGAGCGAGAAAGAGACCGAGAGAGAGTGGTGATTTCATTTTGCTGCGAAGGTTTGCCTGAGAAGTTTGGCTATACTTCTCGGTTCTTCTTCTTTTTGGAACTATCTGTTTCCAATAATATCTCCACACCGACATCGGCTCTTGCAGACTATCAAGAAGAAAAGAAAAGAAGGAGAGGAGGAGGAGGAAGAAGAAGAAGAAGAAGAAGAAGAAGAGGGAGACGGGAAGAAACTGATCCTCAATTGGAACAAAAATTGAGTGAACTGATCATCCCAGGGGTATTGTTAGTGCTCCAGTTTGGGGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

123

Amino Acids

14.66

Weight (kDa)

10.6

Isoelectric Point (pI)

105.36

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 293
AfaI GTAC 1 cut(s) 51
AfiI CCNNNNNNNGG 1 cut(s) 364
AflIII ACRYGT 1 cut(s) 29
AjnI CCWGG 1 cut(s) 337
AloI GAACNNNNNNTCC 2 cut(s) 318, 350
Alw21I GWGCWC 1 cut(s) 357
Alw26I GTCTC 2 cut(s) 72, 277
AlwI GGATC 1 cut(s) 293
ApeKI GCWGC 1 cut(s) 108
AsuHPI GGTGA 1 cut(s) 106
Bbv12I GWGCWC 1 cut(s) 357
BbvI GCAGC 1 cut(s) 95
BccI CCATC 1 cut(s) 13
BciT130I CCWGG 1 cut(s) 339
BclI TGATCA 1 cut(s) 330
BcoDI GTCTC 2 cut(s) 72, 277
BfaI CTAG 1 cut(s) 41
BisI GCNGC 1 cut(s) 109
BlsI GCNGC 1 cut(s) 110
Bme1390I CCNGG 1 cut(s) 339
BmrFI CCNGG 1 cut(s) 339
BpmI CTGGAG 1 cut(s) 341
BsaAI YACGTR 1 cut(s) 32
BsaI GGTCTC 1 cut(s) 72
BsaJI CCNNGG 2 cut(s) 337, 338
Bsc4I CCNNNNNNNGG 1 cut(s) 364
Bse1I ACTGG 1 cut(s) 358
BseBI CCWGG 1 cut(s) 339
BseDI CCNNGG 2 cut(s) 337, 338
BseGI GGATG 1 cut(s) 333
BseLI CCNNNNNNNGG 1 cut(s) 364
BseMII CTCAG 1 cut(s) 114
BseNI ACTGG 1 cut(s) 358
BseRI GAGGAG 3 cut(s) 255, 258, 261
BseXI GCAGC 1 cut(s) 95
BsiHKAI GWGCWC 1 cut(s) 357
BslI CCNNNNNNNGG 1 cut(s) 364
BsmAI GTCTC 2 cut(s) 72, 277
BsmBI CGTCTC 1 cut(s) 277
Bso31I GGTCTC 1 cut(s) 72
Bsp1286I GDGCHC 1 cut(s) 357
Bsp143I GATC 2 cut(s) 298, 330
BspCNI CTCAG 1 cut(s) 115
BspPI GGATC 1 cut(s) 293
BspTNI GGTCTC 1 cut(s) 72
BsrI ACTGG 1 cut(s) 358
BssECI CCNNGG 2 cut(s) 337, 338
BssMI GATC 2 cut(s) 298, 330
Bst2UI CCWGG 1 cut(s) 339
Bst4CI ACNGT 1 cut(s) 54
Bst6I CTCTTC 1 cut(s) 271
BstBAI YACGTR 1 cut(s) 32
BstDEI CTNAG 1 cut(s) 123
BstF5I GGATG 1 cut(s) 333
BstKTI GATC 2 cut(s) 301, 333
BstMAI GTCTC 2 cut(s) 72, 277
BstMBI GATC 2 cut(s) 298, 330
BstNI CCWGG 1 cut(s) 339
BstSCI CCNGG 1 cut(s) 337
BstV1I GCAGC 1 cut(s) 95
BtsCI GGATG 1 cut(s) 333
Csp6I GTAC 1 cut(s) 50
CviJI RGCY 2 cut(s) 135, 203
CviKI_1 RGCY 2 cut(s) 135, 203
CviQI GTAC 1 cut(s) 50
DdeI CTNAG 1 cut(s) 123
DpnI GATC 2 cut(s) 300, 332
DpnII GATC 2 cut(s) 298, 330
Eam1104I CTCTTC 1 cut(s) 271
EarI CTCTTC 1 cut(s) 271
Eco31I GGTCTC 1 cut(s) 72
EcoRII CCWGG 1 cut(s) 337
Esp3I CGTCTC 1 cut(s) 277
FaiI YATR 2 cut(s) 15, 138
FbaI TGATCA 1 cut(s) 330
Fnu4HI GCNGC 1 cut(s) 109
FokI GGATG 1 cut(s) 320
Fsp4HI GCNGC 1 cut(s) 109
FspBI CTAG 1 cut(s) 41
GluI GCNGC 1 cut(s) 109
GsuI CTGGAG 1 cut(s) 341
HphI GGTGA 1 cut(s) 106
Hpy166II GTNNAC 1 cut(s) 326
Hpy188III TCNNGA 2 cut(s) 41, 218
Hpy8I GTNNAC 1 cut(s) 326
HpyAV CCTTC 2 cut(s) 107, 228
HpyCH4III ACNGT 1 cut(s) 54
HpyCH4IV ACGT 1 cut(s) 31
HpyCH4V TGCA 1 cut(s) 209
HpyF3I CTNAG 1 cut(s) 123
HpySE526I ACGT 1 cut(s) 31
Ksp22I TGATCA 1 cut(s) 330
Kzo9I GATC 2 cut(s) 298, 330
LmnI GCTCC 1 cut(s) 360
LpnPI CCDG 3 cut(s) 135, 324, 351
Lsp1109I GCAGC 1 cut(s) 95
MaeI CTAG 1 cut(s) 41
MaeII ACGT 1 cut(s) 31
MalI GATC 2 cut(s) 300, 332
MboI GATC 2 cut(s) 298, 330
MfeI CAATTG 1 cut(s) 305
MhlI GDGCHC 1 cut(s) 357
MluCI AATT 2 cut(s) 305, 317
MnlI CCTC 7 cut(s) 37, 233, 236, 239, 242, 272, 312
MspR9I CCNGG 1 cut(s) 339
MunI CAATTG 1 cut(s) 305
MvaI CCWGG 1 cut(s) 339
NdeII GATC 2 cut(s) 298, 330
PasI CCCWGGG 1 cut(s) 338
PkrI GCNGC 1 cut(s) 110
Ppu21I YACGTR 1 cut(s) 32
Psp6I CCWGG 1 cut(s) 337
PspGI CCWGG 1 cut(s) 337
RsaI GTAC 1 cut(s) 51
RsaNI GTAC 1 cut(s) 50
SatI GCNGC 1 cut(s) 109
Sau3AI GATC 2 cut(s) 298, 330
ScrFI CCNGG 1 cut(s) 339
SduI GDGCHC 1 cut(s) 357
SetI ASST 2 cut(s) 34, 118
Sse9I AATT 2 cut(s) 305, 317
SspMI CTAG 1 cut(s) 41
StyD4I CCNGG 1 cut(s) 337
TaaI ACNGT 1 cut(s) 54
TaiI ACGT 1 cut(s) 34
TaqI TCGA 1 cut(s) 56
TaqII GACCGA 1 cut(s) 96
TasI AATT 2 cut(s) 305, 317
TatI WGTACW 1 cut(s) 49
TseI GCWGC 1 cut(s) 108
TspDTI ATGAA 1 cut(s) 90
XbaI TCTAGA 1 cut(s) 40
XspI CTAG 1 cut(s) 41
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.