Rw1G011870

No description available

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr1
Physical Location & Seq
Reverse (-)
26594866 .. 26595453
588 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw1G011870.1

Sequence Viewer

Length: 357 bp
ATGCCATCGTTCTATAATAAGTCAAATGCACGTAGATTTCTAGAGGAAGTACAGTCGAAACAGAGAGAGCGAGAAAGAGACCGAGAGAGAGTGGTGATTTCATTTTGCTGCGAAGGTTTGCCTGAGAAGTTTGGCTATACTTGTCGGTTCTTCTTCTTTTTGGAACTATCTGTTTCCAATAATATCTCCACACCGACATCGGCTCTTGCAGACTATCAAGAAGAAAAGAAAGGAAGAAGAGGAGGAGGAGGAAGAAGAAGAAGAGGGAGATGGGAAGAAACTGATCCTCAATTGGAACAAAAATTGAGTGAACTGATCATCCCAGGGGTATTGTTAGTGCTCCAGTTTGGGGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

118

Amino Acids

13.8

Weight (kDa)

9.18

Isoelectric Point (pI)

75.88

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 278
AfaI GTAC 1 cut(s) 51
AfiI CCNNNNNNNGG 1 cut(s) 349
AjnI CCWGG 1 cut(s) 322
AloI GAACNNNNNNTCC 2 cut(s) 303, 335
Alw21I GWGCWC 1 cut(s) 342
Alw26I GTCTC 1 cut(s) 72
AlwI GGATC 1 cut(s) 278
ApeKI GCWGC 1 cut(s) 108
AsuHPI GGTGA 1 cut(s) 106
Bbv12I GWGCWC 1 cut(s) 342
BbvI GCAGC 1 cut(s) 95
BccI CCATC 2 cut(s) 13, 264
BciT130I CCWGG 1 cut(s) 324
BclI TGATCA 1 cut(s) 315
BcoDI GTCTC 1 cut(s) 72
BfaI CTAG 1 cut(s) 41
BisI GCNGC 1 cut(s) 109
BlsI GCNGC 1 cut(s) 110
Bme1390I CCNGG 1 cut(s) 324
BmrFI CCNGG 1 cut(s) 324
BpmI CTGGAG 1 cut(s) 326
BsaAI YACGTR 1 cut(s) 32
BsaI GGTCTC 1 cut(s) 72
BsaJI CCNNGG 2 cut(s) 322, 323
Bsc4I CCNNNNNNNGG 1 cut(s) 349
Bse1I ACTGG 1 cut(s) 343
BseBI CCWGG 1 cut(s) 324
BseDI CCNNGG 2 cut(s) 322, 323
BseGI GGATG 1 cut(s) 318
BseLI CCNNNNNNNGG 1 cut(s) 349
BseMII CTCAG 1 cut(s) 114
BseNI ACTGG 1 cut(s) 343
BseRI GAGGAG 3 cut(s) 255, 258, 261
BseXI GCAGC 1 cut(s) 95
BsiHKAI GWGCWC 1 cut(s) 342
BslI CCNNNNNNNGG 1 cut(s) 349
BsmAI GTCTC 1 cut(s) 72
Bso31I GGTCTC 1 cut(s) 72
Bsp1286I GDGCHC 1 cut(s) 342
Bsp143I GATC 2 cut(s) 283, 315
BspCNI CTCAG 1 cut(s) 115
BspPI GGATC 1 cut(s) 278
BspTNI GGTCTC 1 cut(s) 72
BsrI ACTGG 1 cut(s) 343
BssECI CCNNGG 2 cut(s) 322, 323
BssMI GATC 2 cut(s) 283, 315
Bst2UI CCWGG 1 cut(s) 324
Bst4CI ACNGT 1 cut(s) 54
Bst6I CTCTTC 2 cut(s) 232, 256
BstBAI YACGTR 1 cut(s) 32
BstDEI CTNAG 1 cut(s) 123
BstF5I GGATG 1 cut(s) 318
BstKTI GATC 2 cut(s) 286, 318
BstMAI GTCTC 1 cut(s) 72
BstMBI GATC 2 cut(s) 283, 315
BstNI CCWGG 1 cut(s) 324
BstSCI CCNGG 1 cut(s) 322
BstV1I GCAGC 1 cut(s) 95
BtsCI GGATG 1 cut(s) 318
Csp6I GTAC 1 cut(s) 50
CviJI RGCY 2 cut(s) 135, 203
CviKI_1 RGCY 2 cut(s) 135, 203
CviQI GTAC 1 cut(s) 50
DdeI CTNAG 1 cut(s) 123
DpnI GATC 2 cut(s) 285, 317
DpnII GATC 2 cut(s) 283, 315
Eam1104I CTCTTC 2 cut(s) 232, 256
EarI CTCTTC 2 cut(s) 232, 256
Eco31I GGTCTC 1 cut(s) 72
EcoRII CCWGG 1 cut(s) 322
FaiI YATR 2 cut(s) 15, 138
FbaI TGATCA 1 cut(s) 315
Fnu4HI GCNGC 1 cut(s) 109
FokI GGATG 1 cut(s) 305
Fsp4HI GCNGC 1 cut(s) 109
FspBI CTAG 1 cut(s) 41
GluI GCNGC 1 cut(s) 109
GsuI CTGGAG 1 cut(s) 326
HphI GGTGA 1 cut(s) 106
Hpy166II GTNNAC 1 cut(s) 311
Hpy188III TCNNGA 2 cut(s) 41, 218
Hpy8I GTNNAC 1 cut(s) 311
HpyAV CCTTC 1 cut(s) 107
HpyCH4III ACNGT 1 cut(s) 54
HpyCH4IV ACGT 1 cut(s) 31
HpyCH4V TGCA 2 cut(s) 29, 209
HpyF3I CTNAG 1 cut(s) 123
HpySE526I ACGT 1 cut(s) 31
Ksp22I TGATCA 1 cut(s) 315
Kzo9I GATC 2 cut(s) 283, 315
LmnI GCTCC 1 cut(s) 345
LpnPI CCDG 3 cut(s) 135, 309, 336
Lsp1109I GCAGC 1 cut(s) 95
MaeI CTAG 1 cut(s) 41
MaeII ACGT 1 cut(s) 31
MalI GATC 2 cut(s) 285, 317
MboI GATC 2 cut(s) 283, 315
MfeI CAATTG 1 cut(s) 290
MhlI GDGCHC 1 cut(s) 342
MluCI AATT 2 cut(s) 290, 302
MnlI CCTC 7 cut(s) 37, 233, 236, 239, 242, 257, 297
MspR9I CCNGG 1 cut(s) 324
MunI CAATTG 1 cut(s) 290
MvaI CCWGG 1 cut(s) 324
NdeII GATC 2 cut(s) 283, 315
PasI CCCWGGG 1 cut(s) 323
PkrI GCNGC 1 cut(s) 110
Ppu21I YACGTR 1 cut(s) 32
Psp6I CCWGG 1 cut(s) 322
PspGI CCWGG 1 cut(s) 322
RsaI GTAC 1 cut(s) 51
RsaNI GTAC 1 cut(s) 50
SatI GCNGC 1 cut(s) 109
Sau3AI GATC 2 cut(s) 283, 315
ScrFI CCNGG 1 cut(s) 324
SduI GDGCHC 1 cut(s) 342
SetI ASST 2 cut(s) 34, 118
Sse9I AATT 2 cut(s) 290, 302
SspMI CTAG 1 cut(s) 41
StyD4I CCNGG 1 cut(s) 322
TaaI ACNGT 1 cut(s) 54
TaiI ACGT 1 cut(s) 34
TaqI TCGA 1 cut(s) 56
TaqII GACCGA 1 cut(s) 96
TasI AATT 2 cut(s) 290, 302
TatI WGTACW 1 cut(s) 49
TseI GCWGC 1 cut(s) 108
TspDTI ATGAA 1 cut(s) 90
XbaI TCTAGA 1 cut(s) 40
XspI CTAG 1 cut(s) 41
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.