RchiOBHm_Chr4g0400031

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
OG0017773
Physical Location & Seq
Reverse (-)
17604274 .. 17604655
382 bp
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UTR
Exon/CDS
Intron
PRQ37209

Sequence Viewer

Length: 312 bp
ATGGTGAAAATAGCTTATAGGTTTGATTTCCCGTCTTCTAACTCTAGAAGCCCATTCCAATTGTCTGTTGGTGTGAATTTTTGGAAAAAGTTGTGGAAAATTACTATACCTAACTCTGCCAAGGTGCATATCTGGAGAGTTTGTCATAATATGCTACCATCAATGGAGAGGCTAGCATCCAAAAGGGTAGAACTGGATTCCCAAGTATGTGTGCTGTGCTGTTCGGCTTTGGAGACAACATTGCATATTTGTAGAGATTGCCCGTACACTAAGCAACTGCTGCAATCCAATGGAGTTTTGACTCAGCTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PPR PPR_2 PfkB TB2_DP1_HVA22

Protein Analysis

103

Amino Acids

11.86

Weight (kDa)

9.38

Isoelectric Point (pI)

54.53

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-RVT PF13966 24 - 93 1.4e-13 zinc-binding in reverse transcriptase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 76
AfaI GTAC 1 cut(s) 266
AluBI AGCT 2 cut(s) 14, 307
AluI AGCT 2 cut(s) 14, 307
Alw26I GTCTC 1 cut(s) 227
ApeKI GCWGC 1 cut(s) 280
ApoI RAATTY 1 cut(s) 76
AsuHPI GGTGA 1 cut(s) 16
AsuNHI GCTAGC 1 cut(s) 172
BbsI GAAGAC 1 cut(s) 27
BbvI GCAGC 1 cut(s) 267
BccI CCATC 1 cut(s) 166
BcoDI GTCTC 1 cut(s) 227
BfaI CTAG 2 cut(s) 45, 173
BisI GCNGC 1 cut(s) 281
BlsI GCNGC 1 cut(s) 282
BmsI GCATC 1 cut(s) 185
BmtI GCTAGC 1 cut(s) 176
BpiI GAAGAC 1 cut(s) 27
BpmI CTGGAG 1 cut(s) 154
BsaJI CCNNGG 1 cut(s) 120
BsaXI ACNNNNNCTCC 2 cut(s) 127, 157
Bse1I ACTGG 1 cut(s) 198
Bse3DI GCAATG 1 cut(s) 239
BseDI CCNNGG 1 cut(s) 120
BseGI GGATG 1 cut(s) 176
BseMI GCAATG 1 cut(s) 239
BseNI ACTGG 1 cut(s) 198
BseXI GCAGC 1 cut(s) 267
BsmAI GTCTC 1 cut(s) 227
BspOI GCTAGC 1 cut(s) 176
BsrDI GCAATG 1 cut(s) 239
BsrI ACTGG 1 cut(s) 198
BssECI CCNNGG 1 cut(s) 120
BssT1I CCWWGG 1 cut(s) 120
BstAPI GCANNNNNTGC 1 cut(s) 280
BstC8I GCNNGC 1 cut(s) 174
BstDEI CTNAG 2 cut(s) 270, 303
BstF5I GGATG 1 cut(s) 176
BstMAI GTCTC 1 cut(s) 227
BstMWI GCNNNNNNNGC 1 cut(s) 280
BstV1I GCAGC 1 cut(s) 267
BstV2I GAAGAC 1 cut(s) 27
BtsCI GGATG 1 cut(s) 176
Cac8I GCNNGC 1 cut(s) 174
Csp6I GTAC 1 cut(s) 265
CviJI RGCY 5 cut(s) 14, 51, 172, 227, 307
CviKI_1 RGCY 5 cut(s) 14, 51, 172, 227, 307
CviQI GTAC 1 cut(s) 265
DdeI CTNAG 2 cut(s) 270, 303
Eco130I CCWWGG 1 cut(s) 120
EcoT14I CCWWGG 1 cut(s) 120
ErhI CCWWGG 1 cut(s) 120
FaiI YATR 7 cut(s) 18, 107, 129, 147, 152, 208, 246
Fnu4HI GCNGC 1 cut(s) 281
FokI GGATG 1 cut(s) 163
Fsp4HI GCNGC 1 cut(s) 281
FspBI CTAG 2 cut(s) 45, 173
GluI GCNGC 1 cut(s) 281
GsuI CTGGAG 1 cut(s) 154
HinfI GANTC 2 cut(s) 197, 301
HphI GGTGA 1 cut(s) 16
Hpy166II GTNNAC 1 cut(s) 267
Hpy188III TCNNGA 2 cut(s) 45, 133
Hpy8I GTNNAC 1 cut(s) 267
HpyCH4V TGCA 3 cut(s) 127, 244, 283
HpyF10VI GCNNNNNNNGC 1 cut(s) 280
HpyF3I CTNAG 2 cut(s) 270, 303
LpnPI CCDG 2 cut(s) 118, 179
Lsp1109I GCAGC 1 cut(s) 267
LweI GCATC 1 cut(s) 185
MaeI CTAG 2 cut(s) 45, 173
MboII GAAGA 1 cut(s) 27
MfeI CAATTG 1 cut(s) 59
MluCI AATT 3 cut(s) 59, 76, 99
MlyI GAGTC 1 cut(s) 295
MnlI CCTC 1 cut(s) 162
MunI CAATTG 1 cut(s) 59
MwoI GCNNNNNNNGC 1 cut(s) 280
NheI GCTAGC 1 cut(s) 172
PfeI GAWTC 1 cut(s) 197
PkrI GCNGC 1 cut(s) 282
PleI GAGTC 1 cut(s) 295
PpsI GAGTC 1 cut(s) 295
RsaI GTAC 1 cut(s) 266
RsaNI GTAC 1 cut(s) 265
SatI GCNGC 1 cut(s) 281
SchI GAGTC 1 cut(s) 295
SetI ASST 5 cut(s) 16, 23, 112, 126, 309
SfaNI GCATC 1 cut(s) 185
SgeI CNNG 8 cut(s) 43, 57, 133, 145, 185, 206, 215, 274
Sse9I AATT 3 cut(s) 59, 76, 99
SspMI CTAG 2 cut(s) 45, 173
StyI CCWWGG 1 cut(s) 120
TasI AATT 3 cut(s) 59, 76, 99
TfiI GAWTC 1 cut(s) 197
TseI GCWGC 1 cut(s) 280
XapI RAATTY 1 cut(s) 76
XbaI TCTAGA 1 cut(s) 44
XcmI CCANNNNNNNNNTGG 1 cut(s) 65
XspI CTAG 2 cut(s) 45, 173
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.