Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0012042.1

Orthogroup ID

OG0017773

Physical Location & Seq

Genomic Coordinates Forward (+)

46856 .. 47782

Gene Structure 927 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0012042.1_g000008.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 927 bp

atgttagcaaagcaggcttggaggattatcaataaccctcattcccttattgcaaaaatctatgaagctaagtattatccttctagctccttttggtctgcagaaccacattcctctccctcatattcatggaggagtatcttttctacaagggacctaattaaacaagcgtcgtactggcaaattggaactggcgagtcggtgcgtgtcttttctgatgcttgggtccttagtttgcctcttctcaaaccggaaaaaccttctacaattattaatgaggatctcaaggttagtgaattgatttctactagtggttcatggaatgagatgattattagatcttccttttctttgcttgaggcagaagctattctttctatccctttgagatctagaatgctggatgatcgatgtgtatggaatttagaaaaggatggcaaattttcggtgaaaacagcatatcgcttttcttttgctcactcttcttcttatagtccactttctctctctgtgggtatggatttctggaagacactttggaaagttttgatacctaactctgcaaaggttcatttatggcgtgtgtgcaacaatattctcccttctttggagcggttagcttcgaaacatgtgaatatggagtcacaaacttgtgttttatgtgaggtggagatggaaacaactttacatctctgccggaattgctcttatacaaagcaggttttatatgccaatccttatcttaagtgtacctgctatgatccacaaactgatcacctcagtgttttggattggttacgtttttgtgctaaggaactgtccatcaaagagttgggcaacttgatgtatcttctatggggggtatctggaaagaaagaaattgtcgagtttgggaagctaaacgcacgcctgcttgtaatgtattga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RVT_1 RVT_3 zf-RVT

Protein Analysis

308

Amino Acids

35.45

Weight (kDa)

8.75

Isoelectric Point (pI)

36.1

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0017773)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0351461 RchiOBHm_Chr4g0400031
rosa_multiflora	Rmu_co8180804.1_g000001 Rmu_sc0000970.1_g000001 Rmu_sc0002094.1_g000033 Rmu_sc0006233.1_g000037 Rmu_sc0008401.1_g000007 Rmu_sc0009966.1_g000007 Rmu_sc0011109.1_g000011 Rmu_sc0012042.1_g000008 Rmu_sc0012414.1_g000002 Rmu_sc0034598.1_g000001

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	709, 761
AccBSI	CCGCTC	1 cut(s)	613
AciI	CCGC	1 cut(s)	613
AclWI	GGATC	2 cut(s)	288, 755
AcsI	RAATTY	2 cut(s)	421, 440
AfaI	GTAC	2 cut(s)	176, 751
AfiI	CCNNNNNNNGG	1 cut(s)	607
AflII	CTTAAG	1 cut(s)	743
AflIII	ACRYGT	1 cut(s)	628
AhlI	ACTAGT	1 cut(s)	308
AleI	CACNNNNGTG	1 cut(s)	780
AluBI	AGCT	5 cut(s)	68, 87, 368, 620, 898
AluI	AGCT	5 cut(s)	68, 87, 368, 620, 898
AlwI	GGATC	2 cut(s)	288, 755
ApoI	RAATTY	2 cut(s)	421, 440
AseI	ATTAAT	1 cut(s)	273
Asp700I	GAANNNNTTC	1 cut(s)	369
AspS9I	GGNCC	2 cut(s)	154, 226
AsuHPI	GGTGA	2 cut(s)	460, 767
AsuII	TTCGAA	1 cut(s)	623
AvaII	GGWCC	2 cut(s)	154, 226
BbsI	GAAGAC	1 cut(s)	536
BccI	CCATC	3 cut(s)	428, 667, 830
BclI	TGATCA	1 cut(s)	772
BcuI	ACTAGT	1 cut(s)	308
BfaI	CTAG	3 cut(s)	84, 309, 393
BfmI	CTRYAG	1 cut(s)	99
BfrI	CTTAAG	1 cut(s)	743
BfuAI	ACCTGC	2 cut(s)	709, 761
BglII	AGATCT	2 cut(s)	338, 389
Bme18I	GGWCC	2 cut(s)	154, 226
BmgT120I	GGNCC	2 cut(s)	154, 226
BmiI	GGNNCC	2 cut(s)	155, 227
BmsI	GCATC	1 cut(s)	208
BpiI	GAAGAC	1 cut(s)	536
Bpu10I	CCTNAGC	1 cut(s)	810
Bpu14I	TTCGAA	1 cut(s)	623
BpuEI	CTTGAG	2 cut(s)	269, 377
Bsa29I	ATCGAT	1 cut(s)	409
BsaWI	WCCGGW	1 cut(s)	250
Bsc4I	CCNNNNNNNGG	1 cut(s)	607
Bse1I	ACTGG	2 cut(s)	182, 196
BseCI	ATCGAT	1 cut(s)	409
BseGI	GGATG	2 cut(s)	409, 439
BseLI	CCNNNNNNNGG	1 cut(s)	607
BseMII	CTCAG	1 cut(s)	793
BseNI	ACTGG	2 cut(s)	182, 196
BseRI	GAGGAG	1 cut(s)	148
BshVI	ATCGAT	1 cut(s)	409
BsiSI	CCGG	2 cut(s)	251, 697
BslFI	GGGAC	1 cut(s)	167
BslI	CCNNNNNNNGG	1 cut(s)	607
BsmFI	GGGAC	1 cut(s)	167
BsmI	GAATGC	1 cut(s)	402
Bsp119I	TTCGAA	1 cut(s)	623
Bsp143I	GATC	6 cut(s)	280, 338, 389, 406, 760, 772
BspACI	CCGC	1 cut(s)	613
BspCNI	CTCAG	1 cut(s)	792
BspDI	ATCGAT	1 cut(s)	409
BspLI	GGNNCC	2 cut(s)	155, 227
BspMAI	CTGCAG	1 cut(s)	103
BspMI	ACCTGC	2 cut(s)	709, 761
BspPI	GGATC	2 cut(s)	288, 755
BspT104I	TTCGAA	1 cut(s)	623
BspTI	CTTAAG	1 cut(s)	743
BsrBI	CCGCTC	1 cut(s)	613
BsrI	ACTGG	2 cut(s)	182, 196
BssMI	GATC	6 cut(s)	280, 338, 389, 406, 760, 772
Bst4CI	ACNGT	1 cut(s)	819
Bst6I	CTCTTC	2 cut(s)	246, 487
BstAFI	CTTAAG	1 cut(s)	743
BstBI	TTCGAA	1 cut(s)	623
BstC8I	GCNNGC	3 cut(s)	15, 907, 911
BstDEI	CTNAG	4 cut(s)	69, 230, 779, 810
BstF5I	GGATG	2 cut(s)	409, 439
BstKTI	GATC	6 cut(s)	283, 341, 392, 409, 763, 775
BstMBI	GATC	6 cut(s)	280, 338, 389, 406, 760, 772
BstMWI	GCNNNNNNNGC	2 cut(s)	14, 702
BstNSI	RCATGY	1 cut(s)	632
BstSFI	CTRYAG	1 cut(s)	99
BstV2I	GAAGAC	1 cut(s)	536
BstX2I	RGATCY	3 cut(s)	280, 338, 389
BstYI	RGATCY	3 cut(s)	280, 338, 389
Bsu15I	ATCGAT	1 cut(s)	409
BsuTUI	ATCGAT	1 cut(s)	409
BtsCI	GGATG	2 cut(s)	409, 439
BtsIMutI	CAGTG	1 cut(s)	787
BveI	ACCTGC	2 cut(s)	709, 761
Cac8I	GCNNGC	3 cut(s)	15, 907, 911
Cfr13I	GGNCC	2 cut(s)	154, 226
ClaI	ATCGAT	1 cut(s)	409
CseI	GACGC	1 cut(s)	159
Csp6I	GTAC	2 cut(s)	175, 750
CviAII	CATG	3 cut(s)	129, 318, 629
CviJI	RGCY	6 cut(s)	17, 68, 87, 368, 620, 898
CviKI_1	RGCY	6 cut(s)	17, 68, 87, 368, 620, 898
CviQI	GTAC	2 cut(s)	175, 750
DdeI	CTNAG	4 cut(s)	69, 230, 779, 810
DpnI	GATC	6 cut(s)	282, 340, 391, 408, 762, 774
DpnII	GATC	6 cut(s)	280, 338, 389, 406, 760, 772
Eam1104I	CTCTTC	2 cut(s)	246, 487
EarI	CTCTTC	2 cut(s)	246, 487
Eco47I	GGWCC	2 cut(s)	154, 226
EcoO109I	RGGNCCY	2 cut(s)	154, 226
FaeI	CATG	3 cut(s)	132, 321, 632
FalI	AAGNNNNNCTT	2 cut(s)	357, 389
FaqI	GGGAC	1 cut(s)	167
FatI	CATG	3 cut(s)	128, 317, 628
FbaI	TGATCA	1 cut(s)	772
FokI	GGATG	2 cut(s)	416, 446
FspBI	CTAG	3 cut(s)	84, 309, 393
HapII	CCGG	2 cut(s)	251, 697
HgaI	GACGC	1 cut(s)	159
Hin1II	CATG	3 cut(s)	132, 321, 632
HinfI	GANTC	2 cut(s)	197, 641
HpaII	CCGG	2 cut(s)	251, 697
HphI	GGTGA	2 cut(s)	460, 767
Hpy166II	GTNNAC	2 cut(s)	497, 750
Hpy188I	TCNGA	1 cut(s)	217
Hpy188III	TCNNGA	3 cut(s)	393, 526, 867
Hpy8I	GTNNAC	2 cut(s)	497, 750
Hpy99I	CGWCG	1 cut(s)	175
HpyAV	CCTTC	3 cut(s)	90, 270, 612
HpyCH4III	ACNGT	1 cut(s)	819
HpyCH4IV	ACGT	1 cut(s)	799
HpyCH4V	TGCA	4 cut(s)	53, 101, 563, 588
HpyF10VI	GCNNNNNNNGC	2 cut(s)	14, 702
HpyF3I	CTNAG	4 cut(s)	69, 230, 779, 810
HpySE526I	ACGT	1 cut(s)	799
Hsp92II	CATG	3 cut(s)	132, 321, 632
Ksp22I	TGATCA	1 cut(s)	772
Kzo9I	GATC	6 cut(s)	280, 338, 389, 406, 760, 772
LmnI	GCTCC	2 cut(s)	92, 610
LweI	GCATC	1 cut(s)	208
MaeI	CTAG	3 cut(s)	84, 309, 393
MaeII	ACGT	1 cut(s)	799
MaeIII	GTNAC	2 cut(s)	642, 795
MalI	GATC	6 cut(s)	282, 340, 391, 408, 762, 774
MbiI	CCGCTC	1 cut(s)	613
MboI	GATC	6 cut(s)	280, 338, 389, 406, 760, 772
MboII	GAAGA	6 cut(s)	233, 333, 474, 477, 541, 842
MflI	RGATCY	3 cut(s)	280, 338, 389
MluCI	AATT	8 cut(s)	159, 183, 267, 296, 421, 440, 700, 879
MlyI	GAGTC	2 cut(s)	206, 650
MroXI	GAANNNNTTC	1 cut(s)	369
MseI	TTAA	3 cut(s)	162, 273, 744
MslI	CAYNNNNRTG	2 cut(s)	127, 780
MspCI	CTTAAG	1 cut(s)	743
MspI	CCGG	2 cut(s)	251, 697
Mva1269I	GAATGC	1 cut(s)	402
MwoI	GCNNNNNNNGC	2 cut(s)	14, 702
NdeII	GATC	6 cut(s)	280, 338, 389, 406, 760, 772
NlaIII	CATG	3 cut(s)	132, 321, 632
NlaIV	GGNNCC	2 cut(s)	155, 227
NmuCI	GTSAC	1 cut(s)	642
NspI	RCATGY	1 cut(s)	632
NspV	TTCGAA	1 cut(s)	623
OliI	CACNNNNGTG	1 cut(s)	780
PciI	ACATGT	1 cut(s)	628
PctI	GAATGC	1 cut(s)	402
PdmI	GAANNNNTTC	1 cut(s)	369
PleI	GAGTC	2 cut(s)	205, 649
PpsI	GAGTC	2 cut(s)	205, 649
PpuMI	RGGWCCY	2 cut(s)	154, 226
PscI	ACATGT	1 cut(s)	628
PshBI	ATTAAT	1 cut(s)	273
Psp5II	RGGWCCY	2 cut(s)	154, 226
PspN4I	GGNNCC	2 cut(s)	155, 227
PspPI	GGNCC	2 cut(s)	154, 226
PspPPI	RGGWCCY	2 cut(s)	154, 226
PstI	CTGCAG	1 cut(s)	103
PsuI	RGATCY	3 cut(s)	280, 338, 389
RsaI	GTAC	2 cut(s)	176, 751
RsaNI	GTAC	2 cut(s)	175, 750
RseI	CAYNNNNRTG	2 cut(s)	127, 780
SaqAI	TTAA	3 cut(s)	162, 273, 744
Sau3AI	GATC	6 cut(s)	280, 338, 389, 406, 760, 772
Sau96I	GGNCC	2 cut(s)	154, 226
SchI	GAGTC	2 cut(s)	206, 650
SfaNI	GCATC	1 cut(s)	208
SfcI	CTRYAG	1 cut(s)	99
SfuI	TTCGAA	1 cut(s)	623
SinI	GGWCC	2 cut(s)	154, 226
SmiMI	CAYNNNNRTG	2 cut(s)	127, 780
SmlI	CTYRAG	3 cut(s)	284, 356, 743
SmoI	CTYRAG	3 cut(s)	284, 356, 743
SpeI	ACTAGT	1 cut(s)	308
Sse9I	AATT	8 cut(s)	159, 183, 267, 296, 421, 440, 700, 879
SsiI	CCGC	1 cut(s)	613
SspI	AATATT	1 cut(s)	595
SspMI	CTAG	3 cut(s)	84, 309, 393
TaaI	ACNGT	1 cut(s)	819
TaiI	ACGT	1 cut(s)	802
TaqI	TCGA	3 cut(s)	409, 623, 885
TasI	AATT	8 cut(s)	159, 183, 267, 296, 421, 440, 700, 879
Tru1I	TTAA	3 cut(s)	162, 273, 744
Tru9I	TTAA	3 cut(s)	162, 273, 744
TscAI	CASTG	1 cut(s)	787
TseFI	GTSAC	1 cut(s)	642
Tsp45I	GTSAC	1 cut(s)	642
TspDTI	ATGAA	4 cut(s)	78, 117, 306, 560
TspRI	CASTG	1 cut(s)	787
Vha464I	CTTAAG	1 cut(s)	743
VpaK11BI	GGWCC	2 cut(s)	154, 226
VspI	ATTAAT	1 cut(s)	273
XapI	RAATTY	2 cut(s)	421, 440
XbaI	TCTAGA	1 cut(s)	392
XceI	RCATGY	1 cut(s)	632
XcmI	CCANNNNNNNNNTGG	1 cut(s)	829
XmnI	GAANNNNTTC	1 cut(s)	369
XspI	CTAG	3 cut(s)	84, 309, 393

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.