Rmu_sc0012414.1_g000002

Ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0012414.1
OG0017773
Physical Location & Seq
Forward (+)
2226 .. 3266
1041 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0012414.1_g000002.1.cds

Sequence Viewer

Length: 1041 bp
atgagtgtgtttcagctaacgaagaatttttgtgaagatttggagcagatgtgtgaaagattttggtgggggagcactcttgataaaagaaaaattcattggaagacttggaaggctttatgtaaccctaaagaagaaggtggtttagggtttatgatcttatctgaattcaatgtagcaatgttagccaagcaagcttggtgcgtgctaaacaatcctttgtctttggttgcccagatttttaaagctaagtattttccggaggaatctttttggacggtggagcctcacgcttccccttcttactcttggagaagcatattttctactacaagagatttgttagggcaaggtacctattggcaggtaggtaatggtgtagcagtgaatatttggactggttcttggcttccaggtgtgccagattgcaaacgtagggcaggtaatagtgctactggtgacattagtttggttagtgaactgattagccaaactggtctatggaatgctaatttgatccgggctatttttcctttggatgaagcagagataattttatccatccctttttcaactagagtggttgatgattgtgtggtttggtgccttgagaaaagtgggaagttcacagtgaaaactgcttatcgattctctttttctacttctccttctaggagaccttttgacttgcctgtgggggtgaacttttggacgaagttatggaaagtgaatatcccgaattctgccaaagtacatatatggcgtgtgtgccataatattctgccttctatggaaaggttagcttctaaaagggttaatctggaatcactaatatgtcctctttgcactacgaccttggagtctactttgcatatttgtcaagattgtccatatactaagcagctgcttcgaactaatggtctggtgtacaaggtttgttataatctccattttgctaattacaatattttggaatggttaagtgcttatgtcagagaactttctttggaaagcttgggtgagctaaaatatttgcattag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_1 RVT_3 zf-RVT

Protein Analysis

346

Amino Acids

39.69

Weight (kDa)

8.62

Isoelectric Point (pI)

44.77

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 942
AasI GACNNNNNNGTC 1 cut(s) 859
Acc36I ACCTGC 2 cut(s) 355, 431
Acc65I GGTACC 1 cut(s) 353
AccB1I GGYRCC 2 cut(s) 353, 603
AccI GTMKAC 1 cut(s) 863
AccIII TCCGGA 1 cut(s) 259
AclWI GGATC 1 cut(s) 511
AcsI RAATTY 4 cut(s) 25, 93, 167, 739
AfaI GTAC 3 cut(s) 355, 753, 929
AgsI TTSAA 2 cut(s) 172, 573
AjnI CCWGG 1 cut(s) 412
AjuI GAANNNNNNNTTGG 2 cut(s) 82, 114
AluBI AGCT 7 cut(s) 16, 197, 248, 803, 904, 1014, 1024
AluI AGCT 7 cut(s) 16, 197, 248, 803, 904, 1014, 1024
Alw21I GWGCWC 1 cut(s) 77
Alw26I GTCTC 1 cut(s) 670
AlwI GGATC 1 cut(s) 511
Aor13HI TCCGGA 1 cut(s) 259
ApeKI GCWGC 2 cut(s) 901, 904
ApoI RAATTY 4 cut(s) 25, 93, 167, 739
ArsI GACNNNNNNTTYG 2 cut(s) 904, 936
Asp718I GGTACC 1 cut(s) 353
AsuC2I CCSGG 1 cut(s) 521
AsuHPI GGTGA 3 cut(s) 470, 712, 1031
AsuII TTCGAA 1 cut(s) 910
BanI GGYRCC 2 cut(s) 353, 603
BbsI GAAGAC 1 cut(s) 110
Bbv12I GWGCWC 1 cut(s) 77
BbvI GCAGC 2 cut(s) 891, 913
BccI CCATC 1 cut(s) 569
BcgI CGANNNNNNTGC 2 cut(s) 890, 924
BciT130I CCWGG 1 cut(s) 414
BcnI CCSGG 1 cut(s) 521
BcoDI GTCTC 1 cut(s) 670
BfaI CTAG 2 cut(s) 576, 672
BfuAI ACCTGC 2 cut(s) 355, 431
BisI GCNGC 2 cut(s) 902, 905
BlsI GCNGC 2 cut(s) 903, 906
Bme1390I CCNGG 2 cut(s) 414, 521
BmiI GGNNCC 3 cut(s) 285, 355, 605
BmrFI CCNGG 2 cut(s) 414, 521
BpiI GAAGAC 1 cut(s) 110
Bpu14I TTCGAA 1 cut(s) 910
BpuEI CTTGAG 1 cut(s) 629
BpuMI CCSGG 1 cut(s) 521
Bsa29I ATCGAT 1 cut(s) 646
BsaI GGTCTC 1 cut(s) 670
BsaJI CCNNGG 1 cut(s) 855
BsaWI WCCGGW 1 cut(s) 259
BsaXI ACNNNNNCTCC 2 cut(s) 35, 65
Bse1I ACTGG 3 cut(s) 403, 460, 499
Bse3DI GCAATG 1 cut(s) 186
BseAI TCCGGA 1 cut(s) 259
BseBI CCWGG 1 cut(s) 414
BseCI ATCGAT 1 cut(s) 646
BseDI CCNNGG 1 cut(s) 855
BseGI GGATG 2 cut(s) 544, 561
BseMI GCAATG 1 cut(s) 186
BseNI ACTGG 3 cut(s) 403, 460, 499
BseXI GCAGC 2 cut(s) 891, 913
BshNI GGYRCC 2 cut(s) 353, 603
BshVI ATCGAT 1 cut(s) 646
BsiHKAI GWGCWC 1 cut(s) 77
BsiSI CCGG 2 cut(s) 260, 520
BsmAI GTCTC 1 cut(s) 670
BsmI GAATGC 1 cut(s) 511
Bso31I GGTCTC 1 cut(s) 670
Bsp119I TTCGAA 1 cut(s) 910
Bsp1286I GDGCHC 1 cut(s) 77
Bsp13I TCCGGA 1 cut(s) 259
Bsp1407I TGTACA 1 cut(s) 927
Bsp143I GATC 2 cut(s) 156, 516
BspDI ATCGAT 1 cut(s) 646
BspEI TCCGGA 1 cut(s) 259
BspLI GGNNCC 3 cut(s) 285, 355, 605
BspMI ACCTGC 2 cut(s) 355, 431
BspPI GGATC 1 cut(s) 511
BspT104I TTCGAA 1 cut(s) 910
BspT107I GGYRCC 2 cut(s) 353, 603
BspTNI GGTCTC 1 cut(s) 670
BsrDI GCAATG 1 cut(s) 186
BsrGI TGTACA 1 cut(s) 927
BsrI ACTGG 3 cut(s) 403, 460, 499
BssECI CCNNGG 1 cut(s) 855
BssMI GATC 2 cut(s) 156, 516
BssT1I CCWWGG 1 cut(s) 855
Bst2UI CCWGG 1 cut(s) 414
Bst4CI ACNGT 2 cut(s) 280, 631
BstAUI TGTACA 1 cut(s) 927
BstBI TTCGAA 1 cut(s) 910
BstC8I GCNNGC 2 cut(s) 195, 206
BstDEI CTNAG 2 cut(s) 249, 897
BstF5I GGATG 2 cut(s) 544, 561
BstKTI GATC 2 cut(s) 159, 519
BstMAI GTCTC 1 cut(s) 670
BstMBI GATC 2 cut(s) 156, 516
BstMWI GCNNNNNNNGC 2 cut(s) 185, 194
BstNI CCWGG 1 cut(s) 414
BstSCI CCNGG 2 cut(s) 412, 519
BstV1I GCAGC 2 cut(s) 891, 913
BstV2I GAAGAC 1 cut(s) 110
Bsu15I ATCGAT 1 cut(s) 646
BsuTUI ATCGAT 1 cut(s) 646
BtsCI GGATG 2 cut(s) 544, 561
BtsI GCAGTG 1 cut(s) 390
BtsIMutI CAGTG 2 cut(s) 390, 636
BveI ACCTGC 2 cut(s) 355, 431
Cac8I GCNNGC 2 cut(s) 195, 206
ClaI ATCGAT 1 cut(s) 646
Csp6I GTAC 3 cut(s) 354, 752, 928
CspCI CAANNNNNGTGG 2 cut(s) 561, 596
CviQI GTAC 3 cut(s) 354, 752, 928
DdeI CTNAG 2 cut(s) 249, 897
DpnI GATC 2 cut(s) 158, 518
DpnII GATC 2 cut(s) 156, 516
DraI TTTAAA 1 cut(s) 244
DrdI GACNNNNNNGTC 1 cut(s) 859
DseDI GACNNNNNNGTC 1 cut(s) 859
Eco130I CCWWGG 1 cut(s) 855
Eco31I GGTCTC 1 cut(s) 670
EcoRI GAATTC 2 cut(s) 167, 739
EcoRII CCWGG 1 cut(s) 412
EcoT14I CCWWGG 1 cut(s) 855
ErhI CCWWGG 1 cut(s) 855
FalI AAGNNNNNCTT 2 cut(s) 787, 819
FblI GTMKAC 1 cut(s) 863
Fnu4HI GCNGC 2 cut(s) 902, 905
FokI GGATG 2 cut(s) 548, 551
Fsp4HI GCNGC 2 cut(s) 902, 905
FspBI CTAG 2 cut(s) 576, 672
GluI GCNGC 2 cut(s) 902, 905
HapII CCGG 2 cut(s) 260, 520
HindIII AAGCTT 2 cut(s) 195, 1012
HinfI GANTC 4 cut(s) 266, 648, 824, 860
HpaII CCGG 2 cut(s) 260, 520
HphI GGTGA 3 cut(s) 470, 712, 1031
Hpy166II GTNNAC 5 cut(s) 479, 627, 703, 864, 928
Hpy188I TCNGA 2 cut(s) 166, 995
Hpy188III TCNNGA 5 cut(s) 80, 260, 736, 821, 881
Hpy8I GTNNAC 5 cut(s) 479, 627, 703, 864, 928
HpyAV CCTTC 5 cut(s) 106, 131, 309, 678, 795
HpyCH4III ACNGT 2 cut(s) 280, 631
HpyCH4IV ACGT 1 cut(s) 433
HpyCH4V TGCA 4 cut(s) 429, 846, 871, 1036
HpyF10VI GCNNNNNNNGC 2 cut(s) 185, 194
HpyF3I CTNAG 2 cut(s) 249, 897
HpySE526I ACGT 1 cut(s) 433
Kpn2I TCCGGA 1 cut(s) 259
KpnI GGTACC 1 cut(s) 357
Kzo9I GATC 2 cut(s) 156, 516
LmnI GCTCC 3 cut(s) 43, 72, 283
Lsp1109I GCAGC 2 cut(s) 891, 913
MaeI CTAG 2 cut(s) 576, 672
MaeII ACGT 1 cut(s) 433
MaeIII GTNAC 2 cut(s) 122, 458
MalI GATC 2 cut(s) 158, 518
MboI GATC 2 cut(s) 156, 516
MboII GAAGA 4 cut(s) 34, 47, 115, 146
MhlI GDGCHC 1 cut(s) 77
MluCI AATT 7 cut(s) 25, 93, 167, 511, 552, 739, 958
MlyI GAGTC 1 cut(s) 869
MnlI CCTC 3 cut(s) 256, 297, 849
MroI TCCGGA 1 cut(s) 259
MseI TTAA 3 cut(s) 243, 816, 980
MslI CAYNNNNRTG 1 cut(s) 832
MspA1I CMGCKG 1 cut(s) 904
MspI CCGG 2 cut(s) 260, 520
MspR9I CCNGG 2 cut(s) 414, 521
Mva1269I GAATGC 1 cut(s) 511
MvaI CCWGG 1 cut(s) 414
MwoI GCNNNNNNNGC 2 cut(s) 185, 194
NciI CCSGG 1 cut(s) 521
NdeII GATC 2 cut(s) 156, 516
NlaIV GGNNCC 3 cut(s) 285, 355, 605
NmuCI GTSAC 1 cut(s) 458
NspV TTCGAA 1 cut(s) 910
PctI GAATGC 1 cut(s) 511
PfeI GAWTC 3 cut(s) 266, 648, 824
PkrI GCNGC 2 cut(s) 903, 906
PleI GAGTC 1 cut(s) 868
PpsI GAGTC 1 cut(s) 868
PsiI TTATAA 1 cut(s) 942
Psp6I CCWGG 1 cut(s) 412
PspGI CCWGG 1 cut(s) 412
PspN4I GGNNCC 3 cut(s) 285, 355, 605
PvuII CAGCTG 1 cut(s) 904
RsaI GTAC 3 cut(s) 355, 753, 929
RsaNI GTAC 3 cut(s) 354, 752, 928
RseI CAYNNNNRTG 1 cut(s) 832
SaqAI TTAA 3 cut(s) 243, 816, 980
SatI GCNGC 2 cut(s) 902, 905
Sau3AI GATC 2 cut(s) 156, 516
SchI GAGTC 1 cut(s) 869
ScrFI CCNGG 2 cut(s) 414, 521
SduI GDGCHC 1 cut(s) 77
SfuI TTCGAA 1 cut(s) 910
SmiMI CAYNNNNRTG 1 cut(s) 832
SmlI CTYRAG 1 cut(s) 608
SmoI CTYRAG 1 cut(s) 608
Sse9I AATT 7 cut(s) 25, 93, 167, 511, 552, 739, 958
SspI AATATT 4 cut(s) 391, 778, 967, 1031
SspMI CTAG 2 cut(s) 576, 672
StyD4I CCNGG 2 cut(s) 412, 519
StyI CCWWGG 1 cut(s) 855
TaaI ACNGT 2 cut(s) 280, 631
TaiI ACGT 1 cut(s) 436
TaqI TCGA 2 cut(s) 646, 910
TasI AATT 7 cut(s) 25, 93, 167, 511, 552, 739, 958
TatI WGTACW 2 cut(s) 751, 927
TfiI GAWTC 3 cut(s) 266, 648, 824
Tru1I TTAA 3 cut(s) 243, 816, 980
Tru9I TTAA 3 cut(s) 243, 816, 980
TscAI CASTG 2 cut(s) 390, 636
TseFI GTSAC 1 cut(s) 458
TseI GCWGC 2 cut(s) 901, 904
Tsp45I GTSAC 1 cut(s) 458
TspDTI ATGAA 2 cut(s) 86, 555
TspRI CASTG 2 cut(s) 390, 636
XapI RAATTY 4 cut(s) 25, 93, 167, 739
XmiI GTMKAC 1 cut(s) 863
XspI CTAG 2 cut(s) 576, 672
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.