Rmu_sc0034598.1_g000001

ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0034598.1
OG0017773
Physical Location & Seq
Reverse (-)
1 .. 412
412 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0034598.1_g000001.1.cds

Sequence Viewer

Length: 271 bp
atgaataaccagaagattcattggaaaccttggaaggctcttagtaaccctaaggaggaagggggtttggggtttcgtagtttgactgattttaataatgccatgctagctaagcaggcctggagggtggttaacaaccctctatctttgagtgctcggatcttcaaggctccttattttccagaagattctttttggactgtggaacctcatgcttctccgtcttactcatggacaagcatcttctcaactagagatatgctacgcaagg
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_1 RVT_3 zf-RVT

Protein Analysis

90

Amino Acids

10.47

Weight (kDa)

9.9

Isoelectric Point (pI)

35.81

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 167
AfiI CCNNNNNNNGG 1 cut(s) 55
AgsI TTSAA 1 cut(s) 166
AjnI CCWGG 1 cut(s) 119
AluBI AGCT 1 cut(s) 110
AluI AGCT 1 cut(s) 110
Alw21I GWGCWC 1 cut(s) 157
AlwI GGATC 1 cut(s) 167
AoxI GGCC 1 cut(s) 117
AsuNHI GCTAGC 1 cut(s) 106
AxyI CCTNAGG 1 cut(s) 51
Bbv12I GWGCWC 1 cut(s) 157
BciT130I CCWGG 1 cut(s) 121
BfaI CTAG 2 cut(s) 107, 252
BlpI GCTNAGC 1 cut(s) 111
Bme1390I CCNGG 1 cut(s) 121
BmiI GGNNCC 2 cut(s) 171, 207
BmrFI CCNGG 1 cut(s) 121
BmsI GCATC 1 cut(s) 249
BmtI GCTAGC 1 cut(s) 110
BpmI CTGGAG 1 cut(s) 142
Bpu1102I GCTNAGC 1 cut(s) 111
BsaJI CCNNGG 1 cut(s) 29
Bsc4I CCNNNNNNNGG 1 cut(s) 55
Bse21I CCTNAGG 1 cut(s) 51
BseBI CCWGG 1 cut(s) 121
BseDI CCNNGG 1 cut(s) 29
BseLI CCNNNNNNNGG 1 cut(s) 55
BshFI GGCC 1 cut(s) 119
BsiHKAI GWGCWC 1 cut(s) 157
BslI CCNNNNNNNGG 1 cut(s) 55
BsnI GGCC 1 cut(s) 119
Bsp1286I GDGCHC 1 cut(s) 157
Bsp143I GATC 1 cut(s) 159
Bsp1720I GCTNAGC 1 cut(s) 111
BspANI GGCC 1 cut(s) 119
BspLI GGNNCC 2 cut(s) 171, 207
BspOI GCTAGC 1 cut(s) 110
BspPI GGATC 1 cut(s) 167
BssECI CCNNGG 1 cut(s) 29
BssMI GATC 1 cut(s) 159
BssT1I CCWWGG 1 cut(s) 29
Bst2UI CCWGG 1 cut(s) 121
Bst4CI ACNGT 1 cut(s) 202
BstC8I GCNNGC 2 cut(s) 108, 117
BstDEI CTNAG 3 cut(s) 41, 51, 111
BstKTI GATC 1 cut(s) 162
BstMBI GATC 1 cut(s) 159
BstMWI GCNNNNNNNGC 3 cut(s) 107, 112, 116
BstNI CCWGG 1 cut(s) 121
BstSCI CCNGG 1 cut(s) 119
BstX2I RGATCY 1 cut(s) 159
BstYI RGATCY 1 cut(s) 159
Bsu36I CCTNAGG 1 cut(s) 51
BsuRI GGCC 1 cut(s) 119
Cac8I GCNNGC 2 cut(s) 108, 117
CviAII CATG 3 cut(s) 103, 212, 231
CviJI RGCY 4 cut(s) 38, 110, 119, 170
CviKI_1 RGCY 4 cut(s) 38, 110, 119, 170
DdeI CTNAG 3 cut(s) 41, 51, 111
DpnI GATC 1 cut(s) 161
DpnII GATC 1 cut(s) 159
Eco130I CCWWGG 1 cut(s) 29
Eco147I AGGCCT 1 cut(s) 119
Eco81I CCTNAGG 1 cut(s) 51
EcoRII CCWGG 1 cut(s) 119
EcoT14I CCWWGG 1 cut(s) 29
ErhI CCWWGG 1 cut(s) 29
FaeI CATG 3 cut(s) 106, 215, 234
FaiI YATR 4 cut(s) 104, 213, 232, 260
FatI CATG 3 cut(s) 102, 211, 230
FspBI CTAG 2 cut(s) 107, 252
GsuI CTGGAG 1 cut(s) 142
HaeIII GGCC 1 cut(s) 119
Hin1II CATG 3 cut(s) 106, 215, 234
HincII GTYRAC 1 cut(s) 133
HindII GTYRAC 1 cut(s) 133
HinfI GANTC 2 cut(s) 16, 188
HpaI GTTAAC 1 cut(s) 133
Hpy166II GTNNAC 1 cut(s) 133
Hpy188I TCNGA 1 cut(s) 159
Hpy188III TCNNGA 1 cut(s) 182
Hpy8I GTNNAC 1 cut(s) 133
HpyAV CCTTC 2 cut(s) 28, 53
HpyCH4III ACNGT 1 cut(s) 202
HpyF10VI GCNNNNNNNGC 3 cut(s) 107, 112, 116
HpyF3I CTNAG 3 cut(s) 41, 51, 111
Hsp92II CATG 3 cut(s) 106, 215, 234
KspAI GTTAAC 1 cut(s) 133
Kzo9I GATC 1 cut(s) 159
LmnI GCTCC 1 cut(s) 175
LpnPI CCDG 5 cut(s) 23, 101, 106, 133, 195
LweI GCATC 1 cut(s) 249
MaeI CTAG 2 cut(s) 107, 252
MaeIII GTNAC 1 cut(s) 44
MalI GATC 1 cut(s) 161
MboI GATC 1 cut(s) 159
MboII GAAGA 4 cut(s) 25, 154, 197, 235
MflI RGATCY 1 cut(s) 159
MhlI GDGCHC 1 cut(s) 157
MnlI CCTC 4 cut(s) 49, 117, 150, 219
MseI TTAA 2 cut(s) 93, 132
MspR9I CCNGG 1 cut(s) 121
MvaI CCWGG 1 cut(s) 121
MwoI GCNNNNNNNGC 3 cut(s) 107, 112, 116
NdeII GATC 1 cut(s) 159
NheI GCTAGC 1 cut(s) 106
NlaIII CATG 3 cut(s) 106, 215, 234
NlaIV GGNNCC 2 cut(s) 171, 207
PceI AGGCCT 1 cut(s) 119
PfeI GAWTC 2 cut(s) 16, 188
Psp6I CCWGG 1 cut(s) 119
PspGI CCWGG 1 cut(s) 119
PspN4I GGNNCC 2 cut(s) 171, 207
PsuI RGATCY 1 cut(s) 159
SaqAI TTAA 2 cut(s) 93, 132
Sau3AI GATC 1 cut(s) 159
ScrFI CCNGG 1 cut(s) 121
SduI GDGCHC 1 cut(s) 157
SetI ASST 3 cut(s) 31, 112, 211
SfaNI GCATC 1 cut(s) 249
SseBI AGGCCT 1 cut(s) 119
SspMI CTAG 2 cut(s) 107, 252
StuI AGGCCT 1 cut(s) 119
StyD4I CCNGG 1 cut(s) 119
StyI CCWWGG 1 cut(s) 29
TaaI ACNGT 1 cut(s) 202
TfiI GAWTC 2 cut(s) 16, 188
Tru1I TTAA 2 cut(s) 93, 132
Tru9I TTAA 2 cut(s) 93, 132
TspDTI ATGAA 2 cut(s) 8, 17
TspGWI ACGGA 1 cut(s) 210
XspI CTAG 2 cut(s) 107, 252
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.