Rmu_co8180804.1_g000001

Ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8180804.1
OG0017773
Physical Location & Seq
Forward (+)
1 .. 568
568 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8180804.1_g000001.1.cds

Sequence Viewer

Length: 504 bp
ggtaatgctgcgtcgaatgagcttactttggtgagtgacttaattgatcagacaggtcagtggaatactgctttgatccgtgataattttcctgtggaagaggcagaggcaatattggccattcccttatccttcagagaggttgatgatagatttgcttggcatctcgagaagaatggaaagtttacggtgaaaactgcgtatagattttcattctctgcttcttcttctcgtagtccctttgaactaacggttggtgcgactttctggaaaaagatgtggaaggtaacaattctaaattcagctaaaattcatgtttggagagtatgtcatgatatattgccttccatggaatggttggcttctcggagagtagcactggagaccttgatatgtcctctttattccaatgctatagagactaatctacatttatgtcgtgattgtccctttactaaacaactgctccagtccaatgatgtattgtaccagagttgtcgttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_3 zf-RVT

Protein Analysis

167

Amino Acids

19.13

Weight (kDa)

7.06

Isoelectric Point (pI)

48.49

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 354
AclWI GGATC 1 cut(s) 70
AcoI YGGCCR 1 cut(s) 117
AcsI RAATTY 2 cut(s) 298, 309
AcuI CTGAAG 1 cut(s) 118
AfaI GTAC 1 cut(s) 488
AfiI CCNNNNNNNGG 1 cut(s) 354
AgsI TTSAA 1 cut(s) 245
AjuI GAANNNNNNNTTGG 2 cut(s) 237, 269
AluBI AGCT 2 cut(s) 22, 305
AluI AGCT 2 cut(s) 22, 305
Alw26I GTCTC 2 cut(s) 377, 413
AlwI GGATC 1 cut(s) 70
Ama87I CYCGRG 1 cut(s) 167
AoxI GGCC 1 cut(s) 117
ApeKI GCWGC 1 cut(s) 8
ApoI RAATTY 2 cut(s) 298, 309
AsuHPI GGTGA 2 cut(s) 43, 202
AvaI CYCGRG 1 cut(s) 167
BalI TGGCCA 1 cut(s) 119
BclI TGATCA 1 cut(s) 46
BcoDI GTCTC 2 cut(s) 377, 413
BfmI CTRYAG 1 cut(s) 414
BisI GCNGC 1 cut(s) 9
BlsI GCNGC 1 cut(s) 10
BmeT110I CYCGRG 1 cut(s) 167
BmsI GCATC 1 cut(s) 172
BpmI CTGGAG 2 cut(s) 401, 452
BsaI GGTCTC 1 cut(s) 377
BsaJI CCNNGG 1 cut(s) 348
BsaXI ACNNNNNCTCC 4 cut(s) 313, 343, 450, 480
Bsc4I CCNNNNNNNGG 1 cut(s) 354
Bse1I ACTGG 2 cut(s) 384, 469
BseDI CCNNGG 1 cut(s) 348
BseLI CCNNNNNNNGG 1 cut(s) 354
BseNI ACTGG 2 cut(s) 384, 469
BshFI GGCC 1 cut(s) 119
BsiHKCI CYCGRG 1 cut(s) 167
BslFI GGGAC 2 cut(s) 222, 432
BslI CCNNNNNNNGG 1 cut(s) 354
BsmAI GTCTC 2 cut(s) 377, 413
BsmFI GGGAC 2 cut(s) 222, 432
BsnI GGCC 1 cut(s) 119
Bso31I GGTCTC 1 cut(s) 377
BsoBI CYCGRG 1 cut(s) 167
Bsp143I GATC 2 cut(s) 46, 75
Bsp19I CCATGG 1 cut(s) 348
BspANI GGCC 1 cut(s) 119
BspHI TCATGA 1 cut(s) 331
BspPI GGATC 1 cut(s) 70
BspTNI GGTCTC 1 cut(s) 377
BsrI ACTGG 2 cut(s) 384, 469
BssECI CCNNGG 1 cut(s) 348
BssMI GATC 2 cut(s) 46, 75
BssT1I CCWWGG 1 cut(s) 348
Bst4CI ACNGT 2 cut(s) 190, 253
Bst6I CTCTTC 1 cut(s) 93
BstDSI CCRYGG 1 cut(s) 348
BstKTI GATC 2 cut(s) 49, 78
BstMAI GTCTC 2 cut(s) 377, 413
BstMBI GATC 2 cut(s) 46, 75
BstMWI GCNNNNNNNGC 1 cut(s) 116
BstSFI CTRYAG 1 cut(s) 414
BsuRI GGCC 1 cut(s) 119
BtgI CCRYGG 1 cut(s) 348
BtsIMutI CAGTG 2 cut(s) 65, 377
CciI TCATGA 1 cut(s) 331
Csp6I GTAC 1 cut(s) 487
CviAII CATG 3 cut(s) 314, 332, 349
CviJI RGCY 4 cut(s) 22, 119, 305, 362
CviKI_1 RGCY 4 cut(s) 22, 119, 305, 362
CviQI GTAC 1 cut(s) 487
DpnI GATC 2 cut(s) 48, 77
DpnII GATC 2 cut(s) 46, 75
EaeI YGGCCR 1 cut(s) 117
Eam1104I CTCTTC 1 cut(s) 93
EarI CTCTTC 1 cut(s) 93
Eco130I CCWWGG 1 cut(s) 348
Eco31I GGTCTC 1 cut(s) 377
Eco57I CTGAAG 1 cut(s) 118
Eco88I CYCGRG 1 cut(s) 167
EcoT14I CCWWGG 1 cut(s) 348
ErhI CCWWGG 1 cut(s) 348
FaeI CATG 3 cut(s) 317, 335, 352
FaiI YATR 9 cut(s) 204, 315, 328, 333, 338, 350, 394, 416, 436
FaqI GGGAC 2 cut(s) 222, 432
FatI CATG 3 cut(s) 313, 331, 348
FbaI TGATCA 1 cut(s) 46
Fnu4HI GCNGC 1 cut(s) 9
Fsp4HI GCNGC 1 cut(s) 9
GluI GCNGC 1 cut(s) 9
GsuI CTGGAG 2 cut(s) 401, 452
HaeIII GGCC 1 cut(s) 119
Hin1II CATG 3 cut(s) 317, 335, 352
HphI GGTGA 2 cut(s) 43, 202
Hpy166II GTNNAC 1 cut(s) 186
Hpy188I TCNGA 3 cut(s) 51, 137, 369
Hpy188III TCNNGA 5 cut(s) 167, 169, 268, 332, 440
Hpy8I GTNNAC 1 cut(s) 186
Hpy99I CGWCG 1 cut(s) 16
HpyAV CCTTC 3 cut(s) 142, 277, 354
HpyCH4III ACNGT 2 cut(s) 190, 253
HpyF10VI GCNNNNNNNGC 1 cut(s) 116
Hsp92II CATG 3 cut(s) 317, 335, 352
Ksp22I TGATCA 1 cut(s) 46
Kzo9I GATC 2 cut(s) 46, 75
LmnI GCTCC 1 cut(s) 471
LpnPI CCDG 5 cut(s) 39, 105, 253, 365, 482
LweI GCATC 1 cut(s) 172
MaeIII GTNAC 2 cut(s) 35, 286
MalI GATC 2 cut(s) 48, 77
MboI GATC 2 cut(s) 46, 75
MboII GAAGA 4 cut(s) 110, 184, 216, 219
MlsI TGGCCA 1 cut(s) 119
MluCI AATT 5 cut(s) 42, 85, 291, 298, 309
MluNI TGGCCA 1 cut(s) 119
MnlI CCTC 4 cut(s) 94, 100, 133, 408
Mox20I TGGCCA 1 cut(s) 119
MscI TGGCCA 1 cut(s) 119
MseI TTAA 1 cut(s) 41
Msp20I TGGCCA 1 cut(s) 119
MwoI GCNNNNNNNGC 1 cut(s) 116
NcoI CCATGG 1 cut(s) 348
NdeII GATC 2 cut(s) 46, 75
NlaIII CATG 3 cut(s) 317, 335, 352
NmuCI GTSAC 1 cut(s) 35
PaeR7I CTCGAG 1 cut(s) 167
PagI TCATGA 1 cut(s) 331
PcsI WCGNNNNNNNCGW 1 cut(s) 257
PflMI CCANNNNNTGG 1 cut(s) 354
PkrI GCNGC 1 cut(s) 10
RsaI GTAC 1 cut(s) 488
RsaNI GTAC 1 cut(s) 487
SaqAI TTAA 1 cut(s) 41
SatI GCNGC 1 cut(s) 9
Sau3AI GATC 2 cut(s) 46, 75
SetI ASST 6 cut(s) 24, 58, 144, 288, 307, 389
SfaNI GCATC 1 cut(s) 172
SfcI CTRYAG 1 cut(s) 414
Sfr274I CTCGAG 1 cut(s) 167
SlaI CTCGAG 1 cut(s) 167
SmlI CTYRAG 1 cut(s) 167
SmoI CTYRAG 1 cut(s) 167
Sse9I AATT 5 cut(s) 42, 85, 291, 298, 309
SspI AATATT 1 cut(s) 114
StyI CCWWGG 1 cut(s) 348
TaaI ACNGT 2 cut(s) 190, 253
TaqI TCGA 2 cut(s) 14, 168
TasI AATT 5 cut(s) 42, 85, 291, 298, 309
Tru1I TTAA 1 cut(s) 41
Tru9I TTAA 1 cut(s) 41
TscAI CASTG 2 cut(s) 65, 384
TseFI GTSAC 1 cut(s) 35
TseI GCWGC 1 cut(s) 8
Tsp45I GTSAC 1 cut(s) 35
TspDTI ATGAA 2 cut(s) 201, 302
TspGWI ACGGA 1 cut(s) 68
TspRI CASTG 2 cut(s) 65, 384
Van91I CCANNNNNTGG 1 cut(s) 354
XapI RAATTY 2 cut(s) 298, 309
XcmI CCANNNNNNNNNTGG 1 cut(s) 355
XhoI CTCGAG 1 cut(s) 167
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.