Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0018588

Physical Location & Seq

Genomic Coordinates Forward (+)

33890189 .. 33890368

Gene Structure 180 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ38114

Sequence Viewer

CDS Protein Promoter (2k)

Length: 180 bp

ATGATTTCTCGACTATTGGAACTTTTCCTTGCATATGAAGAGGATGTTAATGCCAAGTTGGTGATTCTGAAGGGGAAAGGAAGAGCATTTTGTGCTGCTGGTGATGTAGCAGTTGTGATTCGTGATATTAATGAAGGAAATTGGAGATTAGATGCACATTTTGTGTTAGTGGTGATGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003860 GO:0006082 GO:0006520 GO:0006573 GO:0006574 GO:0006807 GO:0006950 GO:0008150 GO:0008152 GO:0009056 GO:0009063 GO:0009081 GO:0009083 GO:0009266 GO:0009409 GO:0009628 GO:0009987 GO:0016054 GO:0016289 GO:0016787 GO:0016788 GO:0016790 GO:0019752 GO:0043436 GO:0044237 GO:0044238 GO:0044248 GO:0044281 GO:0044282 GO:0046395 GO:0050896 GO:0071704 GO:1901564 GO:1901565 GO:1901575 GO:1901605 GO:1901606

KEGG Pathways

Metabolic & Signaling

ko00280 ko00410 ko00640 ko01100 ko01200 map00280 map00410 map00640 map01100 map01200

Pfam Domains

Protein Families

ECH_2

Protein Analysis

59

Amino Acids

6.6

Weight (kDa)

5.64

Isoelectric Point (pI)

10.28

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ECH_2	PF16113	1 - 54	6.9e-09	Enoyl-CoA hydratase/isomerase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0018588)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr4g0410201
rosa_laevigata	RLG00000008447 RLG00000022499 RLG00000023832
rosa_multiflora	Rmu_co8422681.1_g000001 Rmu_sc0007314.1_g000003 Rmu_sc0012324.1_g000008
rosa_roxburghii	Rroxscaffold_5G00354990
rosa_samantha	Rh4CG171400 Rh4DG005800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcuI	CTGAAG	1 cut(s)	89
ApeKI	GCWGC	1 cut(s)	95
AseI	ATTAAT	1 cut(s)	129
AsuHPI	GGTGA	2 cut(s)	73, 113
BbvI	GCAGC	1 cut(s)	82
BisI	GCNGC	1 cut(s)	96
BlsI	GCNGC	1 cut(s)	97
BmsI	GCATC	1 cut(s)	142
BseGI	GGATG	1 cut(s)	49
BseXI	GCAGC	1 cut(s)	82
BspQI	GCTCTTC	1 cut(s)	76
Bst6I	CTCTTC	2 cut(s)	33, 76
BstAPI	GCANNNNNTGC	1 cut(s)	92
BstF5I	GGATG	1 cut(s)	49
BstMWI	GCNNNNNNNGC	1 cut(s)	92
BstV1I	GCAGC	1 cut(s)	82
BtsCI	GGATG	1 cut(s)	49
Eam1104I	CTCTTC	2 cut(s)	33, 76
EarI	CTCTTC	2 cut(s)	33, 76
Eco57I	CTGAAG	1 cut(s)	89
FaiI	YATR	2 cut(s)	34, 36
FauNDI	CATATG	1 cut(s)	34
Fnu4HI	GCNGC	1 cut(s)	96
FokI	GGATG	1 cut(s)	56
Fsp4HI	GCNGC	1 cut(s)	96
GluI	GCNGC	1 cut(s)	96
HinfI	GANTC	2 cut(s)	64, 118
HphI	GGTGA	2 cut(s)	73, 113
Hpy188I	TCNGA	1 cut(s)	69
Hpy188III	TCNNGA	2 cut(s)	9, 122
HpyAV	CCTTC	2 cut(s)	64, 128
HpyCH4V	TGCA	2 cut(s)	32, 155
HpyF10VI	GCNNNNNNNGC	1 cut(s)	92
LguI	GCTCTTC	1 cut(s)	76
LpnPI	CCDG	1 cut(s)	84
Lsp1109I	GCAGC	1 cut(s)	82
LweI	GCATC	1 cut(s)	142
MboII	GAAGA	2 cut(s)	50, 93
MluCI	AATT	1 cut(s)	139
MnlI	CCTC	1 cut(s)	34
MseI	TTAA	2 cut(s)	48, 129
MwoI	GCNNNNNNNGC	1 cut(s)	92
NdeI	CATATG	1 cut(s)	34
PciSI	GCTCTTC	1 cut(s)	76
PfeI	GAWTC	2 cut(s)	64, 118
PkrI	GCNGC	1 cut(s)	97
PshBI	ATTAAT	1 cut(s)	129
SapI	GCTCTTC	1 cut(s)	76
SaqAI	TTAA	2 cut(s)	48, 129
SatI	GCNGC	1 cut(s)	96
SfaNI	GCATC	1 cut(s)	142
SgeI	CNNG	5 cut(s)	21, 41, 67, 111, 134
Sse9I	AATT	1 cut(s)	139
TaqI	TCGA	1 cut(s)	10
TasI	AATT	1 cut(s)	139
TfiI	GAWTC	2 cut(s)	64, 118
Tru1I	TTAA	2 cut(s)	48, 129
Tru9I	TTAA	2 cut(s)	48, 129
TseI	GCWGC	1 cut(s)	95
TspDTI	ATGAA	2 cut(s)	51, 147
VspI	ATTAAT	1 cut(s)	129

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.