Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8422681.1

Orthogroup ID

OG0018588

Physical Location & Seq

Genomic Coordinates Reverse (-)

290 .. 1172

Gene Structure 883 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8422681.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 363 bp

atgcagtggtgtggaggtgatggggcagcaagtgttggccaattgattcaaagggtaatgaggaggctagagctttcgatgtgttggctgattcgtgatcttatggtggagggacgcaagtatgatgccatgaaacggcgcggcaaagcagggcctcgccaactgaatgcccctaactttgaaatgatttctcgactattggaacttttccttgcatatgaagaggatgttaatgccaagttggtgattctgaaggggaaaggaagagcattttgtgctgctggtgatgtagcagttgtgattcgtgatattaatgaaggaaattggagattaggtgcacattttgtgttagtggtgatgtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003860 GO:0006082 GO:0006520 GO:0006573 GO:0006574 GO:0006807 GO:0006950 GO:0008150 GO:0008152 GO:0009056 GO:0009063 GO:0009081 GO:0009083 GO:0009266 GO:0009409 GO:0009628 GO:0009987 GO:0016054 GO:0016289 GO:0016787 GO:0016788 GO:0016790 GO:0019752 GO:0043436 GO:0044237 GO:0044238 GO:0044248 GO:0044281 GO:0044282 GO:0046395 GO:0050896 GO:0071704 GO:1901564 GO:1901565 GO:1901575 GO:1901605 GO:1901606

KEGG Pathways

Metabolic & Signaling

ko00280 ko00410 ko00640 ko01100 ko01200 map00280 map00410 map00640 map01100 map01200

Pfam Domains

Protein Families

ECH_2

Protein Analysis

120

Amino Acids

13.52

Weight (kDa)

9.45

Isoelectric Point (pI)

24.94

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0018588)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr4g0410201
rosa_laevigata	RLG00000008447 RLG00000022499 RLG00000023832
rosa_multiflora	Rmu_co8422681.1_g000001 Rmu_sc0007314.1_g000003 Rmu_sc0012324.1_g000008
rosa_roxburghii	Rroxscaffold_5G00354990
rosa_samantha	Rh4CG171400 Rh4DG005800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	141
AciI	CCGC	1 cut(s)	141
AcoI	YGGCCR	1 cut(s)	37
AcuI	CTGAAG	1 cut(s)	272
AfiI	CCNNNNNNNGG	1 cut(s)	135
AgsI	TTSAA	2 cut(s)	50, 182
AluBI	AGCT	1 cut(s)	73
AluI	AGCT	1 cut(s)	73
Alw21I	GWGCWC	1 cut(s)	340
Alw44I	GTGCAC	1 cut(s)	336
AoxI	GGCC	2 cut(s)	37, 152
ApaLI	GTGCAC	1 cut(s)	336
ApeKI	GCWGC	2 cut(s)	26, 278
AseI	ATTAAT	1 cut(s)	312
AspLEI	GCGC	1 cut(s)	141
AspS9I	GGNCC	1 cut(s)	152
AsuHPI	GGTGA	3 cut(s)	29, 256, 296
BaeGI	GKGCMC	1 cut(s)	340
BalI	TGGCCA	1 cut(s)	39
Bbv12I	GWGCWC	1 cut(s)	340
BbvI	GCAGC	2 cut(s)	38, 265
BccI	CCATC	1 cut(s)	14
BceAI	ACGGC	1 cut(s)	152
BfaI	CTAG	1 cut(s)	68
BisI	GCNGC	3 cut(s)	27, 142, 279
BlsI	GCNGC	3 cut(s)	28, 143, 280
BmgT120I	GGNCC	1 cut(s)	152
BmsI	GCATC	1 cut(s)	115
BsaXI	ACNNNNNCTCC	2 cut(s)	319, 349
Bsc4I	CCNNNNNNNGG	1 cut(s)	135
BseGI	GGATG	1 cut(s)	232
BseLI	CCNNNNNNNGG	1 cut(s)	135
BseRI	GAGGAG	1 cut(s)	76
BseSI	GKGCMC	1 cut(s)	340
BseXI	GCAGC	2 cut(s)	38, 265
Bsh1236I	CGCG	1 cut(s)	141
BshFI	GGCC	2 cut(s)	39, 154
BsiHKAI	GWGCWC	1 cut(s)	340
BslFI	GGGAC	1 cut(s)	126
BslI	CCNNNNNNNGG	1 cut(s)	135
BsmFI	GGGAC	1 cut(s)	126
BsmI	GAATGC	1 cut(s)	172
BsnI	GGCC	2 cut(s)	39, 154
Bsp1286I	GDGCHC	1 cut(s)	340
Bsp143I	GATC	1 cut(s)	97
BspACI	CCGC	1 cut(s)	141
BspANI	GGCC	2 cut(s)	39, 154
BspFNI	CGCG	1 cut(s)	141
BspQI	GCTCTTC	1 cut(s)	259
BssMI	GATC	1 cut(s)	97
Bst6I	CTCTTC	2 cut(s)	216, 259
BstAPI	GCANNNNNTGC	1 cut(s)	275
BstF5I	GGATG	1 cut(s)	232
BstFNI	CGCG	1 cut(s)	141
BstHHI	GCGC	1 cut(s)	141
BstKTI	GATC	1 cut(s)	100
BstMBI	GATC	1 cut(s)	97
BstMWI	GCNNNNNNNGC	1 cut(s)	275
BstSLI	GKGCMC	1 cut(s)	340
BstUI	CGCG	1 cut(s)	141
BstV1I	GCAGC	2 cut(s)	38, 265
BsuRI	GGCC	2 cut(s)	39, 154
BtsCI	GGATG	1 cut(s)	232
BtsI	GCAGTG	1 cut(s)	11
BtsIMutI	CAGTG	1 cut(s)	11
CfoI	GCGC	1 cut(s)	141
Cfr13I	GGNCC	1 cut(s)	152
CseI	GACGC	1 cut(s)	123
CviAII	CATG	1 cut(s)	130
CviJI	RGCY	5 cut(s)	39, 67, 73, 88, 154
CviKI_1	RGCY	5 cut(s)	39, 67, 73, 88, 154
DpnI	GATC	1 cut(s)	99
DpnII	GATC	1 cut(s)	97
EaeI	YGGCCR	1 cut(s)	37
Eam1104I	CTCTTC	2 cut(s)	216, 259
EarI	CTCTTC	2 cut(s)	216, 259
Eco57I	CTGAAG	1 cut(s)	272
EcoO109I	RGGNCCY	1 cut(s)	152
FaeI	CATG	1 cut(s)	133
FaiI	YATR	5 cut(s)	104, 123, 131, 217, 219
FaqI	GGGAC	1 cut(s)	126
FatI	CATG	1 cut(s)	129
FauNDI	CATATG	1 cut(s)	217
Fnu4HI	GCNGC	3 cut(s)	27, 142, 279
FokI	GGATG	1 cut(s)	239
Fsp4HI	GCNGC	3 cut(s)	27, 142, 279
FspBI	CTAG	1 cut(s)	68
GlaI	GCGC	1 cut(s)	140
GluI	GCNGC	3 cut(s)	27, 142, 279
HaeIII	GGCC	2 cut(s)	39, 154
HgaI	GACGC	1 cut(s)	123
HhaI	GCGC	1 cut(s)	141
Hin1II	CATG	1 cut(s)	133
Hin6I	GCGC	1 cut(s)	139
HinP1I	GCGC	1 cut(s)	139
HinfI	GANTC	4 cut(s)	46, 91, 247, 301
HphI	GGTGA	3 cut(s)	29, 256, 296
Hpy166II	GTNNAC	1 cut(s)	338
Hpy188I	TCNGA	1 cut(s)	252
Hpy188III	TCNNGA	3 cut(s)	95, 192, 305
Hpy8I	GTNNAC	1 cut(s)	338
HpyAV	CCTTC	2 cut(s)	247, 311
HpyCH4V	TGCA	3 cut(s)	4, 215, 338
HpyF10VI	GCNNNNNNNGC	1 cut(s)	275
Hsp92II	CATG	1 cut(s)	133
HspAI	GCGC	1 cut(s)	139
Kzo9I	GATC	1 cut(s)	97
LguI	GCTCTTC	1 cut(s)	259
LpnPI	CCDG	2 cut(s)	135, 267
Lsp1109I	GCAGC	2 cut(s)	38, 265
LweI	GCATC	1 cut(s)	115
MaeI	CTAG	1 cut(s)	68
MalI	GATC	1 cut(s)	99
MboI	GATC	1 cut(s)	97
MboII	GAAGA	2 cut(s)	233, 276
MfeI	CAATTG	1 cut(s)	41
MhlI	GDGCHC	1 cut(s)	340
MlsI	TGGCCA	1 cut(s)	39
MluCI	AATT	2 cut(s)	41, 322
MluNI	TGGCCA	1 cut(s)	39
MnlI	CCTC	6 cut(s)	8, 54, 57, 103, 165, 217
Mox20I	TGGCCA	1 cut(s)	39
MscI	TGGCCA	1 cut(s)	39
MseI	TTAA	2 cut(s)	231, 312
Msp20I	TGGCCA	1 cut(s)	39
MunI	CAATTG	1 cut(s)	41
Mva1269I	GAATGC	1 cut(s)	172
MvnI	CGCG	1 cut(s)	141
MwoI	GCNNNNNNNGC	1 cut(s)	275
NdeI	CATATG	1 cut(s)	217
NdeII	GATC	1 cut(s)	97
NlaIII	CATG	1 cut(s)	133
PciSI	GCTCTTC	1 cut(s)	259
PctI	GAATGC	1 cut(s)	172
PfeI	GAWTC	4 cut(s)	46, 91, 247, 301
PkrI	GCNGC	3 cut(s)	28, 143, 280
PshBI	ATTAAT	1 cut(s)	312
PspPI	GGNCC	1 cut(s)	152
SapI	GCTCTTC	1 cut(s)	259
SaqAI	TTAA	2 cut(s)	231, 312
SatI	GCNGC	3 cut(s)	27, 142, 279
Sau3AI	GATC	1 cut(s)	97
Sau96I	GGNCC	1 cut(s)	152
SduI	GDGCHC	1 cut(s)	340
SetI	ASST	3 cut(s)	19, 75, 337
SfaNI	GCATC	1 cut(s)	115
Sse9I	AATT	2 cut(s)	41, 322
SsiI	CCGC	1 cut(s)	141
SspMI	CTAG	1 cut(s)	68
TaqI	TCGA	2 cut(s)	77, 193
TasI	AATT	2 cut(s)	41, 322
TauI	GCSGC	1 cut(s)	144
TfiI	GAWTC	4 cut(s)	46, 91, 247, 301
Tru1I	TTAA	2 cut(s)	231, 312
Tru9I	TTAA	2 cut(s)	231, 312
TseI	GCWGC	2 cut(s)	26, 278
TspDTI	ATGAA	3 cut(s)	146, 234, 330
VneI	GTGCAC	1 cut(s)	336
VspI	ATTAAT	1 cut(s)	312
XspI	CTAG	1 cut(s)	68

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.