Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0012324.1

Orthogroup ID

OG0018588

Physical Location & Seq

Genomic Coordinates Reverse (-)

23601 .. 24863

Gene Structure 1263 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0012324.1_g000008.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 765 bp

atgggttcacttcgtgttggtcgtgtcggaattgacagccctacctgcactatcttcttaccctctctctgcacggaccgaatccctatctccatcgacagcgagagcagcgccacgatggccacgaatgtcaggatcagcaccggctgcgacggcgaagacgtctcggtctggccccagaatgatattggtaaattgactccagccgatctcactcggtgcctactggaaacgtcgcctccatatattttgaaggttgcgctgctcttctacgtattcctgtttcggctgtggctgcgaggccttgacgcgttggcgcgtgtggcggtggcttcctccttcgctgcctgctgggcctttctctatgctcatttcctccttgtagggtttaaatttcagacagatagaggctatggagaatttgagttgacaccaaaatcgatatgtctctcactctgtcatgaattgctgggttttcaattgaagtctcgagctcatgatcaactggtcttgctcttggttcgattcagaaatcttcaaacttggtctcggcaactgaatgcccttaactttgaaatgatttctcaactattggaacttttccttgcatatgaagaggatgctaatgtcaagttggtgattctcaaggggaaaggaagagcattttgtactggtggtgatgtcgcatggtttgtcatttttgcaaggagaagtcagcaaggatttcagagagggttgcagagctatactgtcggacaaggatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003860 GO:0006082 GO:0006520 GO:0006573 GO:0006574 GO:0006807 GO:0006950 GO:0008150 GO:0008152 GO:0009056 GO:0009063 GO:0009081 GO:0009083 GO:0009266 GO:0009409 GO:0009628 GO:0009987 GO:0016054 GO:0016289 GO:0016787 GO:0016788 GO:0016790 GO:0019752 GO:0043436 GO:0044237 GO:0044238 GO:0044248 GO:0044281 GO:0044282 GO:0046395 GO:0050896 GO:0071704 GO:1901564 GO:1901565 GO:1901575 GO:1901605 GO:1901606

KEGG Pathways

Metabolic & Signaling

ko00280 ko00410 ko00640 ko01100 ko01200 map00280 map00410 map00640 map01100 map01200

Pfam Domains

Protein Families

ECH_2

Protein Analysis

254

Amino Acids

28.41

Weight (kDa)

8.43

Isoelectric Point (pI)

41.82

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0018588)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr4g0410201
rosa_laevigata	RLG00000008447 RLG00000022499 RLG00000023832
rosa_multiflora	Rmu_co8422681.1_g000001 Rmu_sc0007314.1_g000003 Rmu_sc0012324.1_g000008
rosa_roxburghii	Rroxscaffold_5G00354990
rosa_samantha	Rh4CG171400 Rh4DG005800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	167
AatII	GACGTC	1 cut(s)	165
Acc36I	ACCTGC	1 cut(s)	53
AccB1I	GGYRCC	1 cut(s)	219
AccII	CGCG	2 cut(s)	311, 319
AciI	CCGC	1 cut(s)	326
AclWI	GGATC	1 cut(s)	143
AcoI	YGGCCR	1 cut(s)	120
AcsI	RAATTY	2 cut(s)	392, 419
AcyI	GRCGYC	1 cut(s)	162
AdeI	CACNNNGTG	2 cut(s)	14, 219
AfaI	GTAC	1 cut(s)	670
AflIII	ACRYGT	1 cut(s)	309
AgsI	TTSAA	5 cut(s)	253, 479, 484, 539, 575
AluBI	AGCT	2 cut(s)	494, 744
AluI	AGCT	2 cut(s)	494, 744
Alw21I	GWGCWC	1 cut(s)	496
Alw26I	GTCTC	4 cut(s)	169, 452, 492, 552
AlwI	GGATC	1 cut(s)	143
Ama87I	CYCGRG	1 cut(s)	489
AoxI	GGCC	4 cut(s)	120, 173, 301, 354
ApeKI	GCWGC	5 cut(s)	108, 147, 262, 295, 344
ApoI	RAATTY	2 cut(s)	392, 419
AspLEI	GCGC	3 cut(s)	113, 262, 319
AspS9I	GGNCC	3 cut(s)	76, 174, 354
AsuHPI	GGTGA	2 cut(s)	649, 689
AvaI	CYCGRG	1 cut(s)	489
AvaII	GGWCC	1 cut(s)	76
BalI	TGGCCA	1 cut(s)	122
BanI	GGYRCC	1 cut(s)	219
BanII	GRGCYC	1 cut(s)	496
BbsI	GAAGAC	1 cut(s)	165
Bbv12I	GWGCWC	1 cut(s)	496
BbvI	GCAGC	5 cut(s)	120, 134, 249, 282, 331
BccI	CCATC	2 cut(s)	101, 112
BceAI	ACGGC	1 cut(s)	169
BclI	TGATCA	1 cut(s)	499
BcoDI	GTCTC	4 cut(s)	169, 452, 492, 552
BfoI	RGCGCY	1 cut(s)	114
BfuAI	ACCTGC	1 cut(s)	53
BglI	GCCNNNNNGGC	2 cut(s)	119, 353
BisI	GCNGC	5 cut(s)	109, 148, 263, 296, 345
BlsI	GCNGC	5 cut(s)	110, 149, 264, 297, 346
Bme18I	GGWCC	1 cut(s)	76
BmeT110I	CYCGRG	1 cut(s)	489
BmgT120I	GGNCC	3 cut(s)	76, 174, 354
BmiI	GGNNCC	2 cut(s)	176, 221
BmsI	GCATC	1 cut(s)	610
BpiI	GAAGAC	1 cut(s)	165
BpmI	CTGGAG	1 cut(s)	186
BpuEI	CTTGAG	1 cut(s)	629
Bsa29I	ATCGAT	1 cut(s)	440
BsaAI	YACGTR	1 cut(s)	274
BsaHI	GRCGYC	1 cut(s)	162
BsaI	GGTCTC	1 cut(s)	552
BsaXI	ACNNNNNCTCC	2 cut(s)	223, 253
Bse118I	RCCGGY	1 cut(s)	143
Bse1I	ACTGG	3 cut(s)	231, 510, 676
BseCI	ATCGAT	1 cut(s)	440
BseGI	GGATG	1 cut(s)	625
BseNI	ACTGG	3 cut(s)	231, 510, 676
BseXI	GCAGC	5 cut(s)	120, 134, 249, 282, 331
BseYI	CCCAGC	2 cut(s)	351, 469
BsgI	GTGCAG	2 cut(s)	31, 55
Bsh1236I	CGCG	2 cut(s)	311, 319
BshFI	GGCC	4 cut(s)	122, 175, 303, 356
BshNI	GGYRCC	1 cut(s)	219
BshVI	ATCGAT	1 cut(s)	440
BsiHKAI	GWGCWC	1 cut(s)	496
BsiHKCI	CYCGRG	1 cut(s)	489
BsiSI	CCGG	1 cut(s)	144
BsmAI	GTCTC	4 cut(s)	169, 452, 492, 552
BsmBI	CGTCTC	1 cut(s)	169
BsmI	GAATGC	1 cut(s)	565
BsnI	GGCC	4 cut(s)	122, 175, 303, 356
Bso31I	GGTCTC	1 cut(s)	552
BsoBI	CYCGRG	1 cut(s)	489
Bsp1286I	GDGCHC	1 cut(s)	496
Bsp143I	GATC	3 cut(s)	135, 208, 499
BspACI	CCGC	1 cut(s)	326
BspANI	GGCC	4 cut(s)	122, 175, 303, 356
BspDI	ATCGAT	1 cut(s)	440
BspFNI	CGCG	2 cut(s)	311, 319
BspHI	TCATGA	2 cut(s)	460, 496
BspLI	GGNNCC	2 cut(s)	176, 221
BspMI	ACCTGC	1 cut(s)	53
BspPI	GGATC	1 cut(s)	143
BspQI	GCTCTTC	2 cut(s)	272, 652
BspT107I	GGYRCC	1 cut(s)	219
BspTNI	GGTCTC	1 cut(s)	552
BsrFI	RCCGGY	1 cut(s)	143
BsrI	ACTGG	3 cut(s)	231, 510, 676
BssAI	RCCGGY	1 cut(s)	143
BssMI	GATC	3 cut(s)	135, 208, 499
BssNI	GRCGYC	1 cut(s)	162
Bst4CI	ACNGT	1 cut(s)	751
Bst6I	CTCTTC	3 cut(s)	272, 609, 652
BstACI	GRCGYC	1 cut(s)	162
BstAPI	GCANNNNNTGC	1 cut(s)	147
BstBAI	YACGTR	1 cut(s)	274
BstC8I	GCNNGC	1 cut(s)	349
BstF5I	GGATG	1 cut(s)	625
BstFNI	CGCG	2 cut(s)	311, 319
BstH2I	RGCGCY	1 cut(s)	114
BstHHI	GCGC	3 cut(s)	113, 262, 319
BstKTI	GATC	3 cut(s)	138, 211, 502
BstMAI	GTCTC	4 cut(s)	169, 452, 492, 552
BstMBI	GATC	3 cut(s)	135, 208, 499
BstMWI	GCNNNNNNNGC	8 cut(s)	45, 108, 119, 147, 153, 295, 323, 353
BstSNI	TACGTA	1 cut(s)	274
BstUI	CGCG	2 cut(s)	311, 319
BstV1I	GCAGC	5 cut(s)	120, 134, 249, 282, 331
BstV2I	GAAGAC	1 cut(s)	165
Bsu15I	ATCGAT	1 cut(s)	440
BsuRI	GGCC	4 cut(s)	122, 175, 303, 356
BsuTUI	ATCGAT	1 cut(s)	440
BtsCI	GGATG	1 cut(s)	625
BveI	ACCTGC	1 cut(s)	53
Cac8I	GCNNGC	1 cut(s)	349
CciI	TCATGA	2 cut(s)	460, 496
CfoI	GCGC	3 cut(s)	113, 262, 319
Cfr10I	RCCGGY	1 cut(s)	143
Cfr13I	GGNCC	3 cut(s)	76, 174, 354
ClaI	ATCGAT	1 cut(s)	440
CpoI	CGGWCCG	1 cut(s)	76
CseI	GACGC	1 cut(s)	317
Csp6I	GTAC	1 cut(s)	669
CspI	CGGWCCG	1 cut(s)	76
CviAII	CATG	3 cut(s)	461, 497, 687
CviQI	GTAC	1 cut(s)	669
DpnI	GATC	3 cut(s)	137, 210, 501
DpnII	GATC	3 cut(s)	135, 208, 499
DraI	TTTAAA	1 cut(s)	391
DraIII	CACNNNGTG	2 cut(s)	14, 219
DrdI	GACNNNNNNGTC	1 cut(s)	167
DseDI	GACNNNNNNGTC	1 cut(s)	167
EaeI	YGGCCR	1 cut(s)	120
Eam1104I	CTCTTC	3 cut(s)	272, 609, 652
EarI	CTCTTC	3 cut(s)	272, 609, 652
Ecl136II	GAGCTC	1 cut(s)	494
Eco105I	TACGTA	1 cut(s)	274
Eco147I	AGGCCT	1 cut(s)	303
Eco24I	GRGCYC	1 cut(s)	496
Eco31I	GGTCTC	1 cut(s)	552
Eco47I	GGWCC	1 cut(s)	76
Eco53kI	GAGCTC	1 cut(s)	494
Eco88I	CYCGRG	1 cut(s)	489
EcoICRI	GAGCTC	1 cut(s)	494
EcoT38I	GRGCYC	1 cut(s)	496
Esp3I	CGTCTC	1 cut(s)	169
FaeI	CATG	3 cut(s)	464, 500, 690
FatI	CATG	3 cut(s)	460, 496, 686
FauNDI	CATATG	1 cut(s)	610
FbaI	TGATCA	1 cut(s)	499
Fnu4HI	GCNGC	5 cut(s)	109, 148, 263, 296, 345
FokI	GGATG	1 cut(s)	632
FriOI	GRGCYC	1 cut(s)	496
Fsp4HI	GCNGC	5 cut(s)	109, 148, 263, 296, 345
GlaI	GCGC	3 cut(s)	112, 261, 318
GluI	GCNGC	5 cut(s)	109, 148, 263, 296, 345
GsaI	CCCAGC	2 cut(s)	355, 473
GsuI	CTGGAG	1 cut(s)	186
HaeII	RGCGCY	1 cut(s)	114
HaeIII	GGCC	4 cut(s)	122, 175, 303, 356
HapII	CCGG	1 cut(s)	144
HgaI	GACGC	1 cut(s)	317
HhaI	GCGC	3 cut(s)	113, 262, 319
Hin1I	GRCGYC	1 cut(s)	162
Hin1II	CATG	3 cut(s)	464, 500, 690
Hin6I	GCGC	3 cut(s)	111, 260, 317
HinP1I	GCGC	3 cut(s)	111, 260, 317
HincII	GTYRAC	1 cut(s)	429
HindII	GTYRAC	1 cut(s)	429
HinfI	GANTC	4 cut(s)	81, 199, 525, 640
HpaII	CCGG	1 cut(s)	144
HphI	GGTGA	2 cut(s)	649, 689
Hpy166II	GTNNAC	2 cut(s)	8, 429
Hpy188I	TCNGA	5 cut(s)	29, 399, 530, 729, 755
Hpy188III	TCNNGA	4 cut(s)	133, 461, 489, 497
Hpy8I	GTNNAC	2 cut(s)	8, 429
Hpy99I	CGWCG	2 cut(s)	155, 238
HpyAV	CCTTC	2 cut(s)	247, 349
HpyCH4III	ACNGT	1 cut(s)	751
HpyCH4IV	ACGT	3 cut(s)	162, 233, 273
HpyCH4V	TGCA	5 cut(s)	48, 72, 608, 704, 739
HpyF10VI	GCNNNNNNNGC	8 cut(s)	45, 108, 119, 147, 153, 295, 323, 353
HpySE526I	ACGT	3 cut(s)	162, 233, 273
Hsp92I	GRCGYC	1 cut(s)	162
Hsp92II	CATG	3 cut(s)	464, 500, 690
HspAI	GCGC	3 cut(s)	111, 260, 317
Ksp22I	TGATCA	1 cut(s)	499
Kzo9I	GATC	3 cut(s)	135, 208, 499
LguI	GCTCTTC	2 cut(s)	272, 652
Lsp1109I	GCAGC	5 cut(s)	120, 134, 249, 282, 331
LweI	GCATC	1 cut(s)	610
MaeII	ACGT	3 cut(s)	162, 233, 273
MalI	GATC	3 cut(s)	137, 210, 501
MboI	GATC	3 cut(s)	135, 208, 499
MboII	GAAGA	6 cut(s)	46, 170, 259, 527, 626, 669
MfeI	CAATTG	1 cut(s)	479
MhlI	GDGCHC	1 cut(s)	496
MlsI	TGGCCA	1 cut(s)	122
MluCI	AATT	6 cut(s)	30, 194, 392, 419, 464, 479
MluI	ACGCGT	1 cut(s)	309
MluNI	TGGCCA	1 cut(s)	122
MlyI	GAGTC	1 cut(s)	193
MmeI	TCCRAC	2 cut(s)	7, 733
MnlI	CCTC	8 cut(s)	73, 249, 293, 346, 386, 401, 610, 725
Mox20I	TGGCCA	1 cut(s)	122
MscI	TGGCCA	1 cut(s)	122
MseI	TTAA	2 cut(s)	390, 567
Msp20I	TGGCCA	1 cut(s)	122
MspI	CCGG	1 cut(s)	144
MunI	CAATTG	1 cut(s)	479
Mva1269I	GAATGC	1 cut(s)	565
MvnI	CGCG	2 cut(s)	311, 319
MwoI	GCNNNNNNNGC	8 cut(s)	45, 108, 119, 147, 153, 295, 323, 353
NdeI	CATATG	1 cut(s)	610
NdeII	GATC	3 cut(s)	135, 208, 499
NlaIII	CATG	3 cut(s)	464, 500, 690
NlaIV	GGNNCC	2 cut(s)	176, 221
NmeAIII	GCCGAG	1 cut(s)	529
PaeR7I	CTCGAG	1 cut(s)	489
PagI	TCATGA	2 cut(s)	460, 496
PceI	AGGCCT	1 cut(s)	303
PciSI	GCTCTTC	2 cut(s)	272, 652
PcsI	WCGNNNNNNNCGW	3 cut(s)	19, 122, 159
PctI	GAATGC	1 cut(s)	565
PfeI	GAWTC	3 cut(s)	81, 525, 640
PkrI	GCNGC	5 cut(s)	110, 149, 264, 297, 346
PleI	GAGTC	1 cut(s)	193
PpsI	GAGTC	1 cut(s)	193
Ppu21I	YACGTR	1 cut(s)	274
Psp124BI	GAGCTC	1 cut(s)	496
PspFI	CCCAGC	2 cut(s)	351, 469
PspN4I	GGNNCC	2 cut(s)	176, 221
PspPI	GGNCC	3 cut(s)	76, 174, 354
RsaI	GTAC	1 cut(s)	670
RsaNI	GTAC	1 cut(s)	669
Rsr2I	CGGWCCG	1 cut(s)	76
RsrII	CGGWCCG	1 cut(s)	76
SacI	GAGCTC	1 cut(s)	496
SapI	GCTCTTC	2 cut(s)	272, 652
SaqAI	TTAA	2 cut(s)	390, 567
SatI	GCNGC	5 cut(s)	109, 148, 263, 296, 345
Sau3AI	GATC	3 cut(s)	135, 208, 499
Sau96I	GGNCC	3 cut(s)	76, 174, 354
SchI	GAGTC	1 cut(s)	193
SduI	GDGCHC	1 cut(s)	496
SetI	ASST	7 cut(s)	47, 165, 236, 258, 276, 496, 746
SfaNI	GCATC	1 cut(s)	610
Sfr274I	CTCGAG	1 cut(s)	489
SinI	GGWCC	1 cut(s)	76
SlaI	CTCGAG	1 cut(s)	489
SmlI	CTYRAG	2 cut(s)	489, 644
SmoI	CTYRAG	2 cut(s)	489, 644
SnaBI	TACGTA	1 cut(s)	274
Sse9I	AATT	6 cut(s)	30, 194, 392, 419, 464, 479
SseBI	AGGCCT	1 cut(s)	303
SsiI	CCGC	1 cut(s)	326
SstI	GAGCTC	1 cut(s)	496
StuI	AGGCCT	1 cut(s)	303
TaaI	ACNGT	1 cut(s)	751
TaiI	ACGT	3 cut(s)	165, 236, 276
TaqI	TCGA	4 cut(s)	96, 440, 490, 523
TaqII	GACCGA	2 cut(s)	93, 157
TasI	AATT	6 cut(s)	30, 194, 392, 419, 464, 479
TatI	WGTACW	1 cut(s)	668
TfiI	GAWTC	3 cut(s)	81, 525, 640
Tru1I	TTAA	2 cut(s)	390, 567
Tru9I	TTAA	2 cut(s)	390, 567
TseI	GCWGC	5 cut(s)	108, 147, 262, 295, 344
TspDTI	ATGAA	2 cut(s)	477, 627
TspGWI	ACGGA	1 cut(s)	89
VpaK11BI	GGWCC	1 cut(s)	76
XapI	RAATTY	2 cut(s)	392, 419
XcmI	CCANNNNNNNNNTGG	1 cut(s)	185
XhoI	CTCGAG	1 cut(s)	489
ZraI	GACGTC	1 cut(s)	163

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.