Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr5

Orthogroup ID

OG0018588

Physical Location & Seq

Genomic Coordinates Forward (+)

28883355 .. 28885369

Gene Structure 2015 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000023832

Sequence Viewer

CDS Protein Promoter (2k)

Length: 522 bp

ATGGATGATATAACCCTCACAAATATCTTTCTTTGTTGTAGCTATGAATCACGAAGTCGCATTAAGCTAGCCTACACCAGGATTATCATCGATACCATACACTCTGGCAGCCTCTTGAAAGCAAACTACAAGACTGAAGTATTTAGACCAGAGATCCCCATTGAGGGGAGAGCGTCGAAGAAGTCAAGGACTTTGTTGGTGTCTCGGTCGCAATCGCATGCAGTAGTCGCCGAGGAAGATGACGAGGGCGGTGGCGAACAAACTATTCTGGGTTTTGGGTCTGACATGGTTTTGGTTTTTCGGCCTCGACAACTAAATGCCCTTAATTTTGAAATGATTTCTCGACTGTTGGAACTTTTCCTTGCATATGAAGAGGAGACTAATGTCAAGTTGGTGATTCTCAAAGGGAAAGGAAGAGCATTTTGTGTTGGTGGTGATGTAGAATGGTTTGTCATTTTTGCGAGGAGAAGTCAACAAGGATTTCAGAGAGGGCTGCAGAGCTATACTGTCAGAGAAGGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003860 GO:0006082 GO:0006520 GO:0006573 GO:0006574 GO:0006807 GO:0006950 GO:0008150 GO:0008152 GO:0009056 GO:0009063 GO:0009081 GO:0009083 GO:0009266 GO:0009409 GO:0009628 GO:0009987 GO:0016054 GO:0016289 GO:0016787 GO:0016788 GO:0016790 GO:0019752 GO:0043436 GO:0044237 GO:0044238 GO:0044248 GO:0044281 GO:0044282 GO:0046395 GO:0050896 GO:0071704 GO:1901564 GO:1901565 GO:1901575 GO:1901605 GO:1901606

KEGG Pathways

Metabolic & Signaling

ko00280 ko00410 ko00640 ko01100 ko01200 map00280 map00410 map00640 map01100 map01200

Pfam Domains

Protein Families

ECH_2

Protein Analysis

174

Amino Acids

19.6

Weight (kDa)

7.71

Isoelectric Point (pI)

49.72

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ECH_2	PF16113	100 - 158	3.8e-14	Enoyl-CoA hydratase/isomerase
ECH_1	PF00378	101 - 164	1.4e-08	Enoyl-CoA hydratase/isomerase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0018588)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr4g0410201
rosa_laevigata	RLG00000008447 RLG00000022499 RLG00000023832
rosa_multiflora	Rmu_co8422681.1_g000001 Rmu_sc0007314.1_g000003 Rmu_sc0012324.1_g000008
rosa_roxburghii	Rroxscaffold_5G00354990
rosa_samantha	Rh4CG171400 Rh4DG005800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	249
AclWI	GGATC	1 cut(s)	148
AcuI	CTGAAG	1 cut(s)	156
AfiI	CCNNNNNNNGG	4 cut(s)	78, 163, 164, 165
AgsI	TTSAA	2 cut(s)	118, 332
AjnI	CCWGG	1 cut(s)	77
AluBI	AGCT	3 cut(s)	42, 67, 501
AluI	AGCT	3 cut(s)	42, 67, 501
Alw26I	GTCTC	2 cut(s)	207, 371
AlwI	GGATC	1 cut(s)	148
AoxI	GGCC	1 cut(s)	302
ApeKI	GCWGC	2 cut(s)	108, 493
AsuHPI	GGTGA	2 cut(s)	406, 446
AsuNHI	GCTAGC	1 cut(s)	67
BbvI	GCAGC	2 cut(s)	120, 480
BciT130I	CCWGG	1 cut(s)	79
BcoDI	GTCTC	2 cut(s)	207, 371
BfaI	CTAG	1 cut(s)	68
BfmI	CTRYAG	1 cut(s)	494
BisI	GCNGC	2 cut(s)	109, 494
BlsI	GCNGC	2 cut(s)	110, 495
Bme1390I	CCNGG	1 cut(s)	79
BmrFI	CCNGG	1 cut(s)	79
BmtI	GCTAGC	1 cut(s)	71
BoxI	GACNNNNGTC	1 cut(s)	383
Bsa29I	ATCGAT	1 cut(s)	90
BsaBI	GATNNNNATC	1 cut(s)	86
BsaJI	CCNNGG	1 cut(s)	231
Bsc4I	CCNNNNNNNGG	4 cut(s)	78, 163, 164, 165
Bse8I	GATNNNNATC	1 cut(s)	86
BseBI	CCWGG	1 cut(s)	79
BseCI	ATCGAT	1 cut(s)	90
BseDI	CCNNGG	1 cut(s)	231
BseGI	GGATG	1 cut(s)	10
BseJI	GATNNNNATC	1 cut(s)	86
BseLI	CCNNNNNNNGG	4 cut(s)	78, 163, 164, 165
BseRI	GAGGAG	2 cut(s)	389, 478
BseXI	GCAGC	2 cut(s)	120, 480
Bsh1285I	CGRYCG	1 cut(s)	209
BshFI	GGCC	1 cut(s)	304
BshVI	ATCGAT	1 cut(s)	90
BsiEI	CGRYCG	1 cut(s)	209
BslI	CCNNNNNNNGG	4 cut(s)	78, 163, 164, 165
BsmAI	GTCTC	2 cut(s)	207, 371
BsnI	GGCC	1 cut(s)	304
Bsp143I	GATC	1 cut(s)	153
BspACI	CCGC	1 cut(s)	249
BspANI	GGCC	1 cut(s)	304
BspDI	ATCGAT	1 cut(s)	90
BspMAI	CTGCAG	1 cut(s)	498
BspOI	GCTAGC	1 cut(s)	71
BspPI	GGATC	1 cut(s)	148
BspQI	GCTCTTC	1 cut(s)	409
BssECI	CCNNGG	1 cut(s)	231
BssMI	GATC	1 cut(s)	153
Bst2UI	CCWGG	1 cut(s)	79
Bst4CI	ACNGT	2 cut(s)	348, 508
Bst6I	CTCTTC	2 cut(s)	366, 409
BstC8I	GCNNGC	2 cut(s)	69, 219
BstENI	CCTNNNNNAGG	1 cut(s)	76
BstF5I	GGATG	1 cut(s)	10
BstKTI	GATC	1 cut(s)	156
BstMAI	GTCTC	2 cut(s)	207, 371
BstMBI	GATC	1 cut(s)	153
BstMCI	CGRYCG	1 cut(s)	209
BstMWI	GCNNNNNNNGC	1 cut(s)	227
BstNI	CCWGG	1 cut(s)	79
BstNSI	RCATGY	1 cut(s)	221
BstPAI	GACNNNNGTC	1 cut(s)	383
BstSCI	CCNGG	1 cut(s)	77
BstSFI	CTRYAG	1 cut(s)	494
BstV1I	GCAGC	2 cut(s)	120, 480
BstX2I	RGATCY	1 cut(s)	153
BstYI	RGATCY	1 cut(s)	153
Bsu15I	ATCGAT	1 cut(s)	90
BsuRI	GGCC	1 cut(s)	304
BsuTUI	ATCGAT	1 cut(s)	90
BtsCI	GGATG	1 cut(s)	10
Cac8I	GCNNGC	2 cut(s)	69, 219
ClaI	ATCGAT	1 cut(s)	90
CseI	GACGC	1 cut(s)	162
CviAII	CATG	2 cut(s)	218, 286
CviJI	RGCY	7 cut(s)	42, 67, 71, 111, 304, 493, 501
CviKI_1	RGCY	7 cut(s)	42, 67, 71, 111, 304, 493, 501
DpnI	GATC	1 cut(s)	155
DpnII	GATC	1 cut(s)	153
Eam1104I	CTCTTC	2 cut(s)	366, 409
EarI	CTCTTC	2 cut(s)	366, 409
Eco57I	CTGAAG	1 cut(s)	156
EcoNI	CCTNNNNNAGG	1 cut(s)	76
EcoRII	CCWGG	1 cut(s)	77
FaeI	CATG	2 cut(s)	221, 289
FaiI	YATR	8 cut(s)	11, 45, 98, 219, 287, 367, 369, 504
FatI	CATG	2 cut(s)	217, 285
FauNDI	CATATG	1 cut(s)	367
Fnu4HI	GCNGC	2 cut(s)	109, 494
FokI	GGATG	1 cut(s)	17
Fsp4HI	GCNGC	2 cut(s)	109, 494
FspBI	CTAG	1 cut(s)	68
GluI	GCNGC	2 cut(s)	109, 494
HaeIII	GGCC	1 cut(s)	304
HgaI	GACGC	1 cut(s)	162
Hin1II	CATG	2 cut(s)	221, 289
HincII	GTYRAC	1 cut(s)	473
HindII	GTYRAC	1 cut(s)	473
HinfI	GANTC	2 cut(s)	47, 397
HphI	GGTGA	2 cut(s)	406, 446
Hpy166II	GTNNAC	1 cut(s)	473
Hpy188I	TCNGA	3 cut(s)	283, 486, 512
Hpy188III	TCNNGA	3 cut(s)	51, 115, 342
Hpy8I	GTNNAC	1 cut(s)	473
Hpy99I	CGWCG	1 cut(s)	178
HpyAV	CCTTC	1 cut(s)	509
HpyCH4III	ACNGT	2 cut(s)	348, 508
HpyCH4V	TGCA	3 cut(s)	221, 365, 496
HpyF10VI	GCNNNNNNNGC	1 cut(s)	227
Hsp92II	CATG	2 cut(s)	221, 289
Kzo9I	GATC	1 cut(s)	153
LguI	GCTCTTC	1 cut(s)	409
LpnPI	CCDG	5 cut(s)	64, 90, 91, 162, 254
Lsp1109I	GCAGC	2 cut(s)	120, 480
MaeI	CTAG	1 cut(s)	68
MalI	GATC	1 cut(s)	155
MboI	GATC	1 cut(s)	153
MboII	GAAGA	4 cut(s)	190, 248, 383, 426
MflI	RGATCY	1 cut(s)	153
MluCI	AATT	1 cut(s)	325
MmeI	TCCRAC	1 cut(s)	330
MnlI	CCTC	9 cut(s)	26, 122, 157, 226, 238, 315, 367, 456, 482
MseI	TTAA	2 cut(s)	63, 324
MspR9I	CCNGG	1 cut(s)	79
MvaI	CCWGG	1 cut(s)	79
MwoI	GCNNNNNNNGC	1 cut(s)	227
NdeI	CATATG	1 cut(s)	367
NdeII	GATC	1 cut(s)	153
NheI	GCTAGC	1 cut(s)	67
NlaIII	CATG	2 cut(s)	221, 289
NmeAIII	GCCGAG	1 cut(s)	256
NspI	RCATGY	1 cut(s)	221
PaeI	GCATGC	1 cut(s)	221
PciSI	GCTCTTC	1 cut(s)	409
PfeI	GAWTC	2 cut(s)	47, 397
PkrI	GCNGC	2 cut(s)	110, 495
PshAI	GACNNNNGTC	1 cut(s)	383
Psp6I	CCWGG	1 cut(s)	77
PspGI	CCWGG	1 cut(s)	77
PstI	CTGCAG	1 cut(s)	498
PsuI	RGATCY	1 cut(s)	153
SapI	GCTCTTC	1 cut(s)	409
SaqAI	TTAA	2 cut(s)	63, 324
SatI	GCNGC	2 cut(s)	109, 494
Sau3AI	GATC	1 cut(s)	153
ScrFI	CCNGG	1 cut(s)	79
SetI	ASST	3 cut(s)	44, 69, 503
SfcI	CTRYAG	1 cut(s)	494
SphI	GCATGC	1 cut(s)	221
Sse9I	AATT	1 cut(s)	325
SsiI	CCGC	1 cut(s)	249
SspMI	CTAG	1 cut(s)	68
StyD4I	CCNGG	1 cut(s)	77
TaaI	ACNGT	2 cut(s)	348, 508
TaqI	TCGA	4 cut(s)	90, 176, 307, 343
TaqII	GACCGA	1 cut(s)	195
TasI	AATT	1 cut(s)	325
TfiI	GAWTC	2 cut(s)	47, 397
Tru1I	TTAA	2 cut(s)	63, 324
Tru9I	TTAA	2 cut(s)	63, 324
TseI	GCWGC	2 cut(s)	108, 493
TspDTI	ATGAA	2 cut(s)	60, 384
XagI	CCTNNNNNAGG	1 cut(s)	76
XceI	RCATGY	1 cut(s)	221
XspI	CTAG	1 cut(s)	68

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.