Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4C

Orthogroup ID

OG0018588

Physical Location & Seq

Genomic Coordinates Forward (+)

37481286 .. 37481950

Gene Structure 665 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4CG171400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 297 bp

ATGACCTCTTCATCACTTCCAAGATTTGGTCTAATGATCGATGCTCACTGTGACTTGGTTCTTCCAGCTCTAAAGAAATCCCTTCAGCCTCGCCAACTGAATGCCTCTAACTTTGAAATGATTTCTCGACTATTGGAACTTTTCCTTGCATATGAAGAGGATGTTAATGCCAAGTTGGTGATTCTGAAGGGGAAAGGAAGAGCATTTTGTGCTGCTGGTGATGTAGCAGTTGTGATTCGTGATATTAATGAAGGAAATTGGAGATTAGGTGCACATTTTGTGTTAGTGGTGATGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003860 GO:0006082 GO:0006520 GO:0006573 GO:0006574 GO:0006807 GO:0006950 GO:0008150 GO:0008152 GO:0009056 GO:0009063 GO:0009081 GO:0009083 GO:0009266 GO:0009409 GO:0009628 GO:0009987 GO:0016054 GO:0016289 GO:0016787 GO:0016788 GO:0016790 GO:0019752 GO:0043436 GO:0044237 GO:0044238 GO:0044248 GO:0044281 GO:0044282 GO:0046395 GO:0050896 GO:0071704 GO:1901564 GO:1901565 GO:1901575 GO:1901605 GO:1901606

KEGG Pathways

Metabolic & Signaling

ko00280 ko00410 ko00640 ko01100 ko01200 map00280 map00410 map00640 map01100 map01200

Pfam Domains

Protein Families

ECH_2

Protein Analysis

98

Amino Acids

10.86

Weight (kDa)

7.82

Isoelectric Point (pI)

23.25

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ECH_2	PF16113	29 - 92	2.2e-12	Enoyl-CoA hydratase/isomerase
ECH_1	PF00378	29 - 80	8.4e-06	Enoyl-CoA hydratase/isomerase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0018588)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr4g0410201
rosa_laevigata	RLG00000008447 RLG00000022499 RLG00000023832
rosa_multiflora	Rmu_co8422681.1_g000001 Rmu_sc0007314.1_g000003 Rmu_sc0012324.1_g000008
rosa_roxburghii	Rroxscaffold_5G00354990
rosa_samantha	Rh4CG171400 Rh4DG005800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	26
AcuI	CTGAAG	2 cut(s)	68, 206
AfiI	CCNNNNNNNGG	1 cut(s)	26
AgsI	TTSAA	1 cut(s)	116
AluBI	AGCT	1 cut(s)	68
AluI	AGCT	1 cut(s)	68
Alw21I	GWGCWC	1 cut(s)	274
Alw44I	GTGCAC	1 cut(s)	270
ApaLI	GTGCAC	1 cut(s)	270
ApeKI	GCWGC	1 cut(s)	212
AseI	ATTAAT	1 cut(s)	246
AsuHPI	GGTGA	2 cut(s)	190, 230
BaeGI	GKGCMC	1 cut(s)	274
Bbv12I	GWGCWC	1 cut(s)	274
BbvI	GCAGC	1 cut(s)	199
BisI	GCNGC	1 cut(s)	213
BlsI	GCNGC	1 cut(s)	214
BmsI	GCATC	1 cut(s)	31
Bsa29I	ATCGAT	1 cut(s)	39
BsaXI	ACNNNNNCTCC	2 cut(s)	253, 283
Bsc4I	CCNNNNNNNGG	1 cut(s)	26
BseCI	ATCGAT	1 cut(s)	39
BseGI	GGATG	1 cut(s)	166
BseLI	CCNNNNNNNGG	1 cut(s)	26
BseSI	GKGCMC	1 cut(s)	274
BseXI	GCAGC	1 cut(s)	199
BshVI	ATCGAT	1 cut(s)	39
BsiHKAI	GWGCWC	1 cut(s)	274
BslI	CCNNNNNNNGG	1 cut(s)	26
BsmI	GAATGC	1 cut(s)	106
Bsp1286I	GDGCHC	1 cut(s)	274
Bsp143I	GATC	1 cut(s)	36
BspDI	ATCGAT	1 cut(s)	39
BspQI	GCTCTTC	1 cut(s)	193
BssMI	GATC	1 cut(s)	36
Bst4CI	ACNGT	1 cut(s)	50
Bst6I	CTCTTC	3 cut(s)	13, 150, 193
BstAPI	GCANNNNNTGC	1 cut(s)	209
BstF5I	GGATG	1 cut(s)	166
BstKTI	GATC	1 cut(s)	39
BstMBI	GATC	1 cut(s)	36
BstMWI	GCNNNNNNNGC	1 cut(s)	209
BstSLI	GKGCMC	1 cut(s)	274
BstV1I	GCAGC	1 cut(s)	199
Bsu15I	ATCGAT	1 cut(s)	39
BsuTUI	ATCGAT	1 cut(s)	39
BtsCI	GGATG	1 cut(s)	166
BtsIMutI	CAGTG	1 cut(s)	46
ClaI	ATCGAT	1 cut(s)	39
CviJI	RGCY	2 cut(s)	68, 88
CviKI_1	RGCY	2 cut(s)	68, 88
DpnI	GATC	1 cut(s)	38
DpnII	GATC	1 cut(s)	36
Eam1104I	CTCTTC	3 cut(s)	13, 150, 193
EarI	CTCTTC	3 cut(s)	13, 150, 193
Eco57I	CTGAAG	2 cut(s)	68, 206
FaiI	YATR	2 cut(s)	151, 153
FauNDI	CATATG	1 cut(s)	151
Fnu4HI	GCNGC	1 cut(s)	213
FokI	GGATG	1 cut(s)	173
Fsp4HI	GCNGC	1 cut(s)	213
GluI	GCNGC	1 cut(s)	213
HinfI	GANTC	2 cut(s)	181, 235
HphI	GGTGA	2 cut(s)	190, 230
Hpy166II	GTNNAC	1 cut(s)	272
Hpy188I	TCNGA	1 cut(s)	186
Hpy188III	TCNNGA	2 cut(s)	126, 239
Hpy8I	GTNNAC	1 cut(s)	272
HpyAV	CCTTC	3 cut(s)	92, 181, 245
HpyCH4III	ACNGT	1 cut(s)	50
HpyCH4V	TGCA	2 cut(s)	149, 272
HpyF10VI	GCNNNNNNNGC	1 cut(s)	209
Kzo9I	GATC	1 cut(s)	36
LguI	GCTCTTC	1 cut(s)	193
LpnPI	CCDG	2 cut(s)	78, 201
Lsp1109I	GCAGC	1 cut(s)	199
LweI	GCATC	1 cut(s)	31
MaeIII	GTNAC	1 cut(s)	50
MalI	GATC	1 cut(s)	38
MboI	GATC	1 cut(s)	36
MboII	GAAGA	3 cut(s)	53, 167, 210
MhlI	GDGCHC	1 cut(s)	274
MluCI	AATT	1 cut(s)	256
MnlI	CCTC	4 cut(s)	16, 99, 115, 151
MseI	TTAA	2 cut(s)	165, 246
Mva1269I	GAATGC	1 cut(s)	106
MwoI	GCNNNNNNNGC	1 cut(s)	209
NdeI	CATATG	1 cut(s)	151
NdeII	GATC	1 cut(s)	36
NmuCI	GTSAC	1 cut(s)	50
PciSI	GCTCTTC	1 cut(s)	193
PctI	GAATGC	1 cut(s)	106
PfeI	GAWTC	2 cut(s)	181, 235
PflMI	CCANNNNNTGG	1 cut(s)	26
PkrI	GCNGC	1 cut(s)	214
PshBI	ATTAAT	1 cut(s)	246
SapI	GCTCTTC	1 cut(s)	193
SaqAI	TTAA	2 cut(s)	165, 246
SatI	GCNGC	1 cut(s)	213
Sau3AI	GATC	1 cut(s)	36
SduI	GDGCHC	1 cut(s)	274
SetI	ASST	3 cut(s)	8, 70, 271
SfaNI	GCATC	1 cut(s)	31
SgeI	CNNG	9 cut(s)	33, 67, 77, 102, 138, 158, 184, 228, 251
Sse9I	AATT	1 cut(s)	256
TaaI	ACNGT	1 cut(s)	50
TaqI	TCGA	2 cut(s)	39, 127
TasI	AATT	1 cut(s)	256
TfiI	GAWTC	2 cut(s)	181, 235
Tru1I	TTAA	2 cut(s)	165, 246
Tru9I	TTAA	2 cut(s)	165, 246
TscAI	CASTG	1 cut(s)	53
TseFI	GTSAC	1 cut(s)	50
TseI	GCWGC	1 cut(s)	212
Tsp45I	GTSAC	1 cut(s)	50
TspDTI	ATGAA	2 cut(s)	168, 264
TspRI	CASTG	1 cut(s)	53
Van91I	CCANNNNNTGG	1 cut(s)	26
VneI	GTGCAC	1 cut(s)	270
VspI	ATTAAT	1 cut(s)	246

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.