Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0007314.1

Orthogroup ID

OG0018588

Physical Location & Seq

Genomic Coordinates Reverse (-)

6133 .. 8243

Gene Structure 2111 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0007314.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 603 bp

atggttgaccaatccgatcaggtcgtgtcagaattgacagccctacctgcactatcttcttaccctttctctgcacggaccaaatccctatctccatctatagcgagagcggcgccacgatggccacgaatgtcgggatcagcaccggctgtgacgacgaagacgtctcagtctggcccaagaaccgatctcactcggtgcctaccggaaacgtcgcctccatatattttgaaggttgcgctgctcttctacgtattcctgtttcggctgcggctgcaaggccttgacgcgttggcgcatgtggcggtggctttaggtttggtggcggcttcctccttcgccgcctgccgggcctttctctatgctcctttcctccttgtagggtctcggcaactgaatgcccttaactttgaaatgatttctcaactgttggaacttttccttgcatatgaagaggatgctaacgtcaagttggtgattctcaaggggaaaggaagagcattttgtgcttgtggtgatgtcgcatggtttgtcatttttgcaaggagaagtcaacaaggatttcagagagggctgcagagctatactgtcggacaaggatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003860 GO:0006082 GO:0006520 GO:0006573 GO:0006574 GO:0006807 GO:0006950 GO:0008150 GO:0008152 GO:0009056 GO:0009063 GO:0009081 GO:0009083 GO:0009266 GO:0009409 GO:0009628 GO:0009987 GO:0016054 GO:0016289 GO:0016787 GO:0016788 GO:0016790 GO:0019752 GO:0043436 GO:0044237 GO:0044238 GO:0044248 GO:0044281 GO:0044282 GO:0046395 GO:0050896 GO:0071704 GO:1901564 GO:1901565 GO:1901575 GO:1901605 GO:1901606

KEGG Pathways

Metabolic & Signaling

ko00280 ko00410 ko00640 ko01100 ko01200 map00280 map00410 map00640 map01100 map01200

Pfam Domains

Protein Families

ECH_2

Protein Analysis

200

Amino Acids

21.79

Weight (kDa)

9.65

Isoelectric Point (pI)

59.67

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0018588)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr4g0410201
rosa_laevigata	RLG00000008447 RLG00000022499 RLG00000023832
rosa_multiflora	Rmu_co8422681.1_g000001 Rmu_sc0007314.1_g000003 Rmu_sc0012324.1_g000008
rosa_roxburghii	Rroxscaffold_5G00354990
rosa_samantha	Rh4CG171400 Rh4DG005800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	163, 169
AatII	GACGTC	1 cut(s)	167
Acc36I	ACCTGC	1 cut(s)	55
AccB1I	GGYRCC	2 cut(s)	112, 198
AccBSI	CCGCTC	1 cut(s)	110
AccII	CGCG	1 cut(s)	290
AciI	CCGC	5 cut(s)	110, 271, 305, 326, 342
AclWI	GGATC	1 cut(s)	145
AcoI	YGGCCR	1 cut(s)	122
AcyI	GRCGYC	2 cut(s)	113, 164
AdeI	CACNNNGTG	1 cut(s)	198
AfiI	CCNNNNNNNGG	1 cut(s)	348
AflIII	ACRYGT	1 cut(s)	288
AgsI	TTSAA	2 cut(s)	232, 413
AluBI	AGCT	1 cut(s)	582
AluI	AGCT	1 cut(s)	582
Alw26I	GTCTC	2 cut(s)	171, 390
AlwI	GGATC	1 cut(s)	145
AoxI	GGCC	4 cut(s)	122, 175, 280, 351
ApeKI	GCWGC	4 cut(s)	241, 268, 274, 574
AspLEI	GCGC	3 cut(s)	115, 241, 298
AspS9I	GGNCC	3 cut(s)	78, 176, 351
AsuC2I	CCSGG	1 cut(s)	350
AsuHPI	GGTGA	2 cut(s)	487, 527
AvaII	GGWCC	1 cut(s)	78
BalI	TGGCCA	1 cut(s)	124
BanI	GGYRCC	2 cut(s)	112, 198
BbsI	GAAGAC	1 cut(s)	167
BbvI	GCAGC	4 cut(s)	228, 255, 261, 561
BccI	CCATC	2 cut(s)	103, 114
BcnI	CCSGG	1 cut(s)	350
BcoDI	GTCTC	2 cut(s)	171, 390
BfmI	CTRYAG	2 cut(s)	99, 575
BfoI	RGCGCY	1 cut(s)	116
BfuAI	ACCTGC	1 cut(s)	55
BglI	GCCNNNNNGGC	2 cut(s)	121, 350
BisI	GCNGC	8 cut(s)	111, 242, 269, 272, 275, 327, 342, 575
BlsI	GCNGC	8 cut(s)	112, 243, 270, 273, 276, 328, 343, 576
Bme1390I	CCNGG	1 cut(s)	350
Bme18I	GGWCC	1 cut(s)	78
BmgT120I	GGNCC	3 cut(s)	78, 176, 351
BmiI	GGNNCC	2 cut(s)	114, 200
BmrFI	CCNGG	1 cut(s)	350
BmsI	GCATC	1 cut(s)	448
BpiI	GAAGAC	1 cut(s)	167
BpuEI	CTTGAG	1 cut(s)	467
BpuMI	CCSGG	1 cut(s)	350
BsaAI	YACGTR	1 cut(s)	253
BsaHI	GRCGYC	2 cut(s)	113, 164
BsaI	GGTCTC	1 cut(s)	390
BsaWI	WCCGGW	1 cut(s)	205
BsaXI	ACNNNNNCTCC	2 cut(s)	202, 232
Bsc4I	CCNNNNNNNGG	1 cut(s)	348
Bse118I	RCCGGY	1 cut(s)	145
BseGI	GGATG	1 cut(s)	463
BseLI	CCNNNNNNNGG	1 cut(s)	348
BseMII	CTCAG	1 cut(s)	182
BseXI	GCAGC	4 cut(s)	228, 255, 261, 561
BsgI	GTGCAG	2 cut(s)	33, 57
Bsh1236I	CGCG	1 cut(s)	290
BshFI	GGCC	4 cut(s)	124, 177, 282, 353
BshNI	GGYRCC	2 cut(s)	112, 198
BsiSI	CCGG	3 cut(s)	146, 206, 349
BslI	CCNNNNNNNGG	1 cut(s)	348
BsmAI	GTCTC	2 cut(s)	171, 390
BsmBI	CGTCTC	1 cut(s)	171
BsmI	GAATGC	1 cut(s)	403
BsnI	GGCC	4 cut(s)	124, 177, 282, 353
Bso31I	GGTCTC	1 cut(s)	390
Bsp143I	GATC	3 cut(s)	16, 137, 187
BspACI	CCGC	5 cut(s)	110, 271, 305, 326, 342
BspANI	GGCC	4 cut(s)	124, 177, 282, 353
BspCNI	CTCAG	1 cut(s)	181
BspFNI	CGCG	1 cut(s)	290
BspLI	GGNNCC	2 cut(s)	114, 200
BspMAI	CTGCAG	1 cut(s)	579
BspMI	ACCTGC	1 cut(s)	55
BspPI	GGATC	1 cut(s)	145
BspQI	GCTCTTC	2 cut(s)	251, 490
BspT107I	GGYRCC	2 cut(s)	112, 198
BspTNI	GGTCTC	1 cut(s)	390
BsrBI	CCGCTC	1 cut(s)	110
BsrFI	RCCGGY	1 cut(s)	145
BssAI	RCCGGY	1 cut(s)	145
BssMI	GATC	3 cut(s)	16, 137, 187
BssNI	GRCGYC	2 cut(s)	113, 164
Bst4CI	ACNGT	2 cut(s)	429, 589
Bst6I	CTCTTC	3 cut(s)	251, 447, 490
BstACI	GRCGYC	2 cut(s)	113, 164
BstAPI	GCANNNNNTGC	1 cut(s)	506
BstBAI	YACGTR	1 cut(s)	253
BstC8I	GCNNGC	1 cut(s)	346
BstDEI	CTNAG	1 cut(s)	168
BstF5I	GGATG	1 cut(s)	463
BstFNI	CGCG	1 cut(s)	290
BstH2I	RGCGCY	1 cut(s)	116
BstHHI	GCGC	3 cut(s)	115, 241, 298
BstKTI	GATC	3 cut(s)	19, 140, 190
BstMAI	GTCTC	2 cut(s)	171, 390
BstMBI	GATC	3 cut(s)	16, 137, 187
BstMWI	GCNNNNNNNGC	7 cut(s)	47, 110, 121, 274, 302, 350, 506
BstNSI	RCATGY	1 cut(s)	302
BstSCI	CCNGG	1 cut(s)	348
BstSFI	CTRYAG	2 cut(s)	99, 575
BstSNI	TACGTA	1 cut(s)	253
BstUI	CGCG	1 cut(s)	290
BstV1I	GCAGC	4 cut(s)	228, 255, 261, 561
BstV2I	GAAGAC	1 cut(s)	167
BsuRI	GGCC	4 cut(s)	124, 177, 282, 353
BtsCI	GGATG	1 cut(s)	463
BveI	ACCTGC	1 cut(s)	55
Cac8I	GCNNGC	1 cut(s)	346
CfoI	GCGC	3 cut(s)	115, 241, 298
Cfr10I	RCCGGY	1 cut(s)	145
Cfr13I	GGNCC	3 cut(s)	78, 176, 351
CseI	GACGC	1 cut(s)	296
CviAII	CATG	2 cut(s)	299, 525
DdeI	CTNAG	1 cut(s)	168
DinI	GGCGCC	1 cut(s)	114
DpnI	GATC	3 cut(s)	18, 139, 189
DpnII	GATC	3 cut(s)	16, 137, 187
DraIII	CACNNNGTG	1 cut(s)	198
DrdI	GACNNNNNNGTC	2 cut(s)	163, 169
DseDI	GACNNNNNNGTC	2 cut(s)	163, 169
EaeI	YGGCCR	1 cut(s)	122
Eam1104I	CTCTTC	3 cut(s)	251, 447, 490
EarI	CTCTTC	3 cut(s)	251, 447, 490
Eco105I	TACGTA	1 cut(s)	253
Eco147I	AGGCCT	1 cut(s)	282
Eco31I	GGTCTC	1 cut(s)	390
Eco47I	GGWCC	1 cut(s)	78
EgeI	GGCGCC	1 cut(s)	114
EheI	GGCGCC	1 cut(s)	114
Esp3I	CGTCTC	1 cut(s)	171
FaeI	CATG	2 cut(s)	302, 528
FaiI	YATR	9 cut(s)	101, 223, 225, 300, 363, 448, 450, 526, 585
FatI	CATG	2 cut(s)	298, 524
FauNDI	CATATG	1 cut(s)	448
Fnu4HI	GCNGC	8 cut(s)	111, 242, 269, 272, 275, 327, 342, 575
FokI	GGATG	1 cut(s)	470
Fsp4HI	GCNGC	8 cut(s)	111, 242, 269, 272, 275, 327, 342, 575
GlaI	GCGC	3 cut(s)	114, 240, 297
GluI	GCNGC	8 cut(s)	111, 242, 269, 272, 275, 327, 342, 575
HaeII	RGCGCY	1 cut(s)	116
HaeIII	GGCC	4 cut(s)	124, 177, 282, 353
HapII	CCGG	3 cut(s)	146, 206, 349
HgaI	GACGC	1 cut(s)	296
HhaI	GCGC	3 cut(s)	115, 241, 298
Hin1I	GRCGYC	2 cut(s)	113, 164
Hin1II	CATG	2 cut(s)	302, 528
Hin6I	GCGC	3 cut(s)	113, 239, 296
HinP1I	GCGC	3 cut(s)	113, 239, 296
HincII	GTYRAC	2 cut(s)	7, 554
HindII	GTYRAC	2 cut(s)	7, 554
HinfI	GANTC	1 cut(s)	478
HpaII	CCGG	3 cut(s)	146, 206, 349
HphI	GGTGA	2 cut(s)	487, 527
Hpy166II	GTNNAC	2 cut(s)	7, 554
Hpy188I	TCNGA	4 cut(s)	16, 31, 567, 593
Hpy188III	TCNNGA	1 cut(s)	135
Hpy8I	GTNNAC	2 cut(s)	7, 554
Hpy99I	CGWCG	2 cut(s)	160, 217
HpyAV	CCTTC	2 cut(s)	226, 346
HpyCH4III	ACNGT	2 cut(s)	429, 589
HpyCH4IV	ACGT	4 cut(s)	164, 212, 252, 465
HpyCH4V	TGCA	6 cut(s)	50, 74, 277, 446, 542, 577
HpyF10VI	GCNNNNNNNGC	7 cut(s)	47, 110, 121, 274, 302, 350, 506
HpyF3I	CTNAG	1 cut(s)	168
HpySE526I	ACGT	4 cut(s)	164, 212, 252, 465
Hsp92I	GRCGYC	2 cut(s)	113, 164
Hsp92II	CATG	2 cut(s)	302, 528
HspAI	GCGC	3 cut(s)	113, 239, 296
KasI	GGCGCC	1 cut(s)	112
Kzo9I	GATC	3 cut(s)	16, 137, 187
LguI	GCTCTTC	2 cut(s)	251, 490
LmnI	GCTCC	1 cut(s)	370
LpnPI	CCDG	8 cut(s)	5, 60, 159, 159, 219, 272, 358, 362
Lsp1109I	GCAGC	4 cut(s)	228, 255, 261, 561
LweI	GCATC	1 cut(s)	448
MaeII	ACGT	4 cut(s)	164, 212, 252, 465
MaeIII	GTNAC	1 cut(s)	151
MalI	GATC	3 cut(s)	18, 139, 189
MbiI	CCGCTC	1 cut(s)	110
MboI	GATC	3 cut(s)	16, 137, 187
MboII	GAAGA	5 cut(s)	48, 172, 238, 464, 507
MlsI	TGGCCA	1 cut(s)	124
MluCI	AATT	1 cut(s)	32
MluI	ACGCGT	1 cut(s)	288
MluNI	TGGCCA	1 cut(s)	124
Mly113I	GGCGCC	1 cut(s)	113
MmeI	TCCRAC	2 cut(s)	411, 571
MnlI	CCTC	5 cut(s)	228, 343, 383, 448, 563
Mox20I	TGGCCA	1 cut(s)	124
MscI	TGGCCA	1 cut(s)	124
MseI	TTAA	1 cut(s)	405
Msp20I	TGGCCA	1 cut(s)	124
MspI	CCGG	3 cut(s)	146, 206, 349
MspR9I	CCNGG	1 cut(s)	350
Mva1269I	GAATGC	1 cut(s)	403
MvnI	CGCG	1 cut(s)	290
MwoI	GCNNNNNNNGC	7 cut(s)	47, 110, 121, 274, 302, 350, 506
NarI	GGCGCC	1 cut(s)	113
NciI	CCSGG	1 cut(s)	350
NdeI	CATATG	1 cut(s)	448
NdeII	GATC	3 cut(s)	16, 137, 187
NlaIII	CATG	2 cut(s)	302, 528
NlaIV	GGNNCC	2 cut(s)	114, 200
NmeAIII	GCCGAG	1 cut(s)	367
NmuCI	GTSAC	1 cut(s)	151
NspI	RCATGY	1 cut(s)	302
PceI	AGGCCT	1 cut(s)	282
PciSI	GCTCTTC	2 cut(s)	251, 490
PcsI	WCGNNNNNNNCGW	2 cut(s)	124, 161
PctI	GAATGC	1 cut(s)	403
PfeI	GAWTC	1 cut(s)	478
PkrI	GCNGC	8 cut(s)	112, 243, 270, 273, 276, 328, 343, 576
PluTI	GGCGCC	1 cut(s)	116
Ppu21I	YACGTR	1 cut(s)	253
PspN4I	GGNNCC	2 cut(s)	114, 200
PspPI	GGNCC	3 cut(s)	78, 176, 351
PstI	CTGCAG	1 cut(s)	579
SapI	GCTCTTC	2 cut(s)	251, 490
SaqAI	TTAA	1 cut(s)	405
SatI	GCNGC	8 cut(s)	111, 242, 269, 272, 275, 327, 342, 575
Sau3AI	GATC	3 cut(s)	16, 137, 187
Sau96I	GGNCC	3 cut(s)	78, 176, 351
ScrFI	CCNGG	1 cut(s)	350
SetI	ASST	9 cut(s)	24, 49, 167, 215, 237, 255, 319, 468, 584
SfaNI	GCATC	1 cut(s)	448
SfcI	CTRYAG	2 cut(s)	99, 575
SfoI	GGCGCC	1 cut(s)	114
SinI	GGWCC	1 cut(s)	78
SmlI	CTYRAG	1 cut(s)	482
SmoI	CTYRAG	1 cut(s)	482
SnaBI	TACGTA	1 cut(s)	253
Sse9I	AATT	1 cut(s)	32
SseBI	AGGCCT	1 cut(s)	282
SsiI	CCGC	5 cut(s)	110, 271, 305, 326, 342
SspDI	GGCGCC	1 cut(s)	112
StuI	AGGCCT	1 cut(s)	282
StyD4I	CCNGG	1 cut(s)	348
TaaI	ACNGT	2 cut(s)	429, 589
TaiI	ACGT	4 cut(s)	167, 215, 255, 468
TasI	AATT	1 cut(s)	32
TauI	GCSGC	4 cut(s)	113, 274, 329, 344
TfiI	GAWTC	1 cut(s)	478
Tru1I	TTAA	1 cut(s)	405
Tru9I	TTAA	1 cut(s)	405
TseFI	GTSAC	1 cut(s)	151
TseI	GCWGC	4 cut(s)	241, 268, 274, 574
Tsp45I	GTSAC	1 cut(s)	151
TspDTI	ATGAA	1 cut(s)	465
TspGWI	ACGGA	1 cut(s)	91
VpaK11BI	GGWCC	1 cut(s)	78
XceI	RCATGY	1 cut(s)	302
ZraI	GACGTC	1 cut(s)	165

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.