Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0018588

Physical Location & Seq

Genomic Coordinates Forward (+)

33562460 .. 33564520

Gene Structure 2061 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00354990.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 519 bp

ATGAAGAATATTCAGATCAGGATTTGGGAAGAGGAGTCGGAGGAGGAATTGGATGAAGATTCCAATGATGATGATGTGGAGACGGTGGTGGAGAGGAAAATGAAGGTGGTGGTGGCTGATGAGGAGGAGGAGATAGATGAGTTTAATGATCCAACAACAAGAGAAGAATGCATGGAGGATCTGTTGCTTGTGTGCTGTGTGCTGTTAGATGGGATTGAGTTGTTTCGGATGCGGTGGTGTGGAGGTGATGGGGCAGCAAGTGTTGGCCAATTGATTCAAAGGGTAATGAGGAGGCTAGAGCTTTCGATGTGTTGGCTGATTCGTGATCTTACGGTGGAGGGACGCAAGTATGATGCCATGAAACGGCACGGCAAAGCGGGGCCTCGCCAACCGAATGCCCCTAACTTTGAAATGATTTCTCGACTATTGGAACTTTTCCTTGCATATGAAGAGGATGTTAATGCCAAGTTGGTGATTCGAAGGGGAAAGGAAGAGCATTTTGTGCTGCTGGTGATGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003860 GO:0006082 GO:0006520 GO:0006573 GO:0006574 GO:0006807 GO:0006950 GO:0008150 GO:0008152 GO:0009056 GO:0009063 GO:0009081 GO:0009083 GO:0009266 GO:0009409 GO:0009628 GO:0009987 GO:0016054 GO:0016289 GO:0016787 GO:0016788 GO:0016790 GO:0019752 GO:0043436 GO:0044237 GO:0044238 GO:0044248 GO:0044281 GO:0044282 GO:0046395 GO:0050896 GO:0071704 GO:1901564 GO:1901565 GO:1901575 GO:1901605 GO:1901606

KEGG Pathways

Metabolic & Signaling

ko00280 ko00410 ko00640 ko01100 ko01200 map00280 map00410 map00640 map01100 map01200

Pfam Domains

Protein Families

ECH_2

Protein Analysis

172

Amino Acids

20.11

Weight (kDa)

4.54

Isoelectric Point (pI)

60.71

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0018588)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr4g0410201
rosa_laevigata	RLG00000008447 RLG00000022499 RLG00000023832
rosa_multiflora	Rmu_co8422681.1_g000001 Rmu_sc0007314.1_g000003 Rmu_sc0012324.1_g000008
rosa_roxburghii	Rroxscaffold_5G00354990
rosa_samantha	Rh4CG171400 Rh4DG005800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	232, 377
AclWI	GGATC	2 cut(s)	143, 186
AcoI	YGGCCR	1 cut(s)	265
AfiI	CCNNNNNNNGG	1 cut(s)	363
AgsI	TTSAA	2 cut(s)	278, 410
AluBI	AGCT	1 cut(s)	301
AluI	AGCT	1 cut(s)	301
Alw26I	GTCTC	1 cut(s)	74
AlwI	GGATC	2 cut(s)	143, 186
AoxI	GGCC	2 cut(s)	265, 380
ApeKI	GCWGC	2 cut(s)	254, 505
AspS9I	GGNCC	1 cut(s)	380
AsuHPI	GGTGA	2 cut(s)	257, 484
AsuII	TTCGAA	1 cut(s)	478
BalI	TGGCCA	1 cut(s)	267
BbvI	GCAGC	2 cut(s)	266, 492
BccI	CCATC	2 cut(s)	203, 242
BceAI	ACGGC	2 cut(s)	380, 385
BcoDI	GTCTC	1 cut(s)	74
BfaI	CTAG	1 cut(s)	296
BisI	GCNGC	2 cut(s)	255, 506
BlsI	GCNGC	2 cut(s)	256, 507
BmgT120I	GGNCC	1 cut(s)	380
BmiI	GGNNCC	1 cut(s)	381
BmsI	GCATC	2 cut(s)	219, 343
Bpu14I	TTCGAA	1 cut(s)	478
BsaXI	ACNNNNNCTCC	2 cut(s)	167, 197
Bsc4I	CCNNNNNNNGG	1 cut(s)	363
BseGI	GGATG	3 cut(s)	58, 234, 460
BseLI	CCNNNNNNNGG	1 cut(s)	363
BseRI	GAGGAG	6 cut(s)	47, 56, 137, 140, 143, 304
BseXI	GCAGC	2 cut(s)	266, 492
BshFI	GGCC	2 cut(s)	267, 382
BslFI	GGGAC	1 cut(s)	354
BslI	CCNNNNNNNGG	1 cut(s)	363
BsmAI	GTCTC	1 cut(s)	74
BsmBI	CGTCTC	1 cut(s)	74
BsmFI	GGGAC	1 cut(s)	354
BsmI	GAATGC	2 cut(s)	173, 400
BsnI	GGCC	2 cut(s)	267, 382
Bsp119I	TTCGAA	1 cut(s)	478
Bsp143I	GATC	4 cut(s)	15, 148, 178, 325
BspACI	CCGC	2 cut(s)	232, 377
BspANI	GGCC	2 cut(s)	267, 382
BspLI	GGNNCC	1 cut(s)	381
BspPI	GGATC	2 cut(s)	143, 186
BspQI	GCTCTTC	1 cut(s)	486
BspT104I	TTCGAA	1 cut(s)	478
BssMI	GATC	4 cut(s)	15, 148, 178, 325
Bst4CI	ACNGT	2 cut(s)	85, 334
Bst6I	CTCTTC	3 cut(s)	24, 444, 486
BstAPI	GCANNNNNTGC	1 cut(s)	502
BstBI	TTCGAA	1 cut(s)	478
BstF5I	GGATG	3 cut(s)	58, 234, 460
BstKTI	GATC	4 cut(s)	18, 151, 181, 328
BstMAI	GTCTC	1 cut(s)	74
BstMBI	GATC	4 cut(s)	15, 148, 178, 325
BstMWI	GCNNNNNNNGC	1 cut(s)	502
BstV1I	GCAGC	2 cut(s)	266, 492
BstX2I	RGATCY	1 cut(s)	178
BstYI	RGATCY	1 cut(s)	178
BsuRI	GGCC	2 cut(s)	267, 382
BtsCI	GGATG	3 cut(s)	58, 234, 460
Cfr13I	GGNCC	1 cut(s)	380
CseI	GACGC	1 cut(s)	351
CviAII	CATG	2 cut(s)	172, 358
CviJI	RGCY	6 cut(s)	116, 267, 295, 301, 316, 382
CviKI_1	RGCY	6 cut(s)	116, 267, 295, 301, 316, 382
DpnI	GATC	4 cut(s)	17, 150, 180, 327
DpnII	GATC	4 cut(s)	15, 148, 178, 325
EaeI	YGGCCR	1 cut(s)	265
Eam1104I	CTCTTC	3 cut(s)	24, 444, 486
EarI	CTCTTC	3 cut(s)	24, 444, 486
EcoO109I	RGGNCCY	1 cut(s)	380
EcoT22I	ATGCAT	1 cut(s)	173
Esp3I	CGTCTC	1 cut(s)	74
FaeI	CATG	2 cut(s)	175, 361
FaiI	YATR	5 cut(s)	173, 351, 359, 445, 447
FaqI	GGGAC	1 cut(s)	354
FatI	CATG	2 cut(s)	171, 357
FauI	CCCGC	1 cut(s)	370
FauNDI	CATATG	1 cut(s)	445
Fnu4HI	GCNGC	2 cut(s)	255, 506
FokI	GGATG	3 cut(s)	65, 241, 467
Fsp4HI	GCNGC	2 cut(s)	255, 506
FspBI	CTAG	1 cut(s)	296
GluI	GCNGC	2 cut(s)	255, 506
HaeIII	GGCC	2 cut(s)	267, 382
HgaI	GACGC	1 cut(s)	351
Hin1II	CATG	2 cut(s)	175, 361
HinfI	GANTC	5 cut(s)	35, 59, 274, 319, 475
HphI	GGTGA	2 cut(s)	257, 484
Hpy188I	TCNGA	3 cut(s)	15, 40, 228
Hpy188III	TCNNGA	3 cut(s)	19, 323, 420
HpyAV	CCTTC	2 cut(s)	97, 474
HpyCH4III	ACNGT	2 cut(s)	85, 334
HpyCH4V	TGCA	2 cut(s)	171, 443
HpyF10VI	GCNNNNNNNGC	1 cut(s)	502
Hsp92II	CATG	2 cut(s)	175, 361
Kzo9I	GATC	4 cut(s)	15, 148, 178, 325
LguI	GCTCTTC	1 cut(s)	486
LpnPI	CCDG	2 cut(s)	4, 494
Lsp1109I	GCAGC	2 cut(s)	266, 492
LweI	GCATC	2 cut(s)	219, 343
MaeI	CTAG	1 cut(s)	296
MalI	GATC	4 cut(s)	17, 150, 180, 327
MboI	GATC	4 cut(s)	15, 148, 178, 325
MboII	GAAGA	6 cut(s)	16, 41, 68, 176, 461, 503
MfeI	CAATTG	1 cut(s)	269
MflI	RGATCY	1 cut(s)	178
MlsI	TGGCCA	1 cut(s)	267
MluCI	AATT	2 cut(s)	47, 269
MluNI	TGGCCA	1 cut(s)	267
MlyI	GAGTC	1 cut(s)	44
MmeI	TCCRAC	2 cut(s)	18, 176
Mox20I	TGGCCA	1 cut(s)	267
Mph1103I	ATGCAT	1 cut(s)	173
MscI	TGGCCA	1 cut(s)	267
MseI	TTAA	2 cut(s)	144, 459
Msp20I	TGGCCA	1 cut(s)	267
MunI	CAATTG	1 cut(s)	269
Mva1269I	GAATGC	2 cut(s)	173, 400
MwoI	GCNNNNNNNGC	1 cut(s)	502
NdeI	CATATG	1 cut(s)	445
NdeII	GATC	4 cut(s)	15, 148, 178, 325
NlaIII	CATG	2 cut(s)	175, 361
NlaIV	GGNNCC	1 cut(s)	381
NsiI	ATGCAT	1 cut(s)	173
NspV	TTCGAA	1 cut(s)	478
PciSI	GCTCTTC	1 cut(s)	486
PctI	GAATGC	2 cut(s)	173, 400
PfeI	GAWTC	4 cut(s)	59, 274, 319, 475
PkrI	GCNGC	2 cut(s)	256, 507
PleI	GAGTC	1 cut(s)	43
PpsI	GAGTC	1 cut(s)	43
PspN4I	GGNNCC	1 cut(s)	381
PspPI	GGNCC	1 cut(s)	380
PsuI	RGATCY	1 cut(s)	178
SapI	GCTCTTC	1 cut(s)	486
SaqAI	TTAA	2 cut(s)	144, 459
SatI	GCNGC	2 cut(s)	255, 506
Sau3AI	GATC	4 cut(s)	15, 148, 178, 325
Sau96I	GGNCC	1 cut(s)	380
SchI	GAGTC	1 cut(s)	44
SetI	ASST	3 cut(s)	108, 247, 303
SfaNI	GCATC	2 cut(s)	219, 343
SfuI	TTCGAA	1 cut(s)	478
Sse9I	AATT	2 cut(s)	47, 269
SsiI	CCGC	2 cut(s)	232, 377
SspI	AATATT	1 cut(s)	10
SspMI	CTAG	1 cut(s)	296
TaaI	ACNGT	2 cut(s)	85, 334
TaqI	TCGA	3 cut(s)	305, 421, 478
TasI	AATT	2 cut(s)	47, 269
TfiI	GAWTC	4 cut(s)	59, 274, 319, 475
Tru1I	TTAA	2 cut(s)	144, 459
Tru9I	TTAA	2 cut(s)	144, 459
TseI	GCWGC	2 cut(s)	254, 505
TspDTI	ATGAA	5 cut(s)	17, 69, 116, 374, 462
XspI	CTAG	1 cut(s)	296
Zsp2I	ATGCAT	1 cut(s)	173

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.