Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr5

Orthogroup ID

OG0018588

Physical Location & Seq

Genomic Coordinates Forward (+)

2077486 .. 2079283

Gene Structure 1798 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000022499

Sequence Viewer

CDS Protein Promoter (2k)

Length: 516 bp

ATGCCATGCGGCGGCGCGGGGAGGCAGGGTATTAGGCAAATTTTGGAAGTAGCCATAGCCCAAGCAGTCAAACTCGGCTTGGTGGTTCCGATACAACCTTGCTTCAAGTGTTGGCCAATTGATGCAAAGGGCAACAAGGAGGCTAGGACTTTCGATCTGTCGGCACTGATCCGTGATCTGATGGTGGAGGGACGCATGTATGATGCCATGCGGCGGCACGGGGAGAGGCCTCGGCAACTGAATGCCCTTAACTTTAAAATGATTTCGTTACTGTTGGAACTTTTCCTTGCATATGAAGACGATGCTAATGTCAAGTTGGTGATTCTCAAGGGGAAAGGAAGAGCATTTTGTGCTAGTGGTGATGTAGCGGCTGTGGTTCGTGATATTAATGAAGGAAATTGGAGATTAGGTGCACATTTTGTGCTAGTTGATGTAGAATGGTTTGTCATTTTTGCGAGGAGAAGTCAGCAAGGATTTCAGAAAGGGCTGCAGAGCTATACTGTCGGACAAGGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003860 GO:0006082 GO:0006520 GO:0006573 GO:0006574 GO:0006807 GO:0006950 GO:0008150 GO:0008152 GO:0009056 GO:0009063 GO:0009081 GO:0009083 GO:0009266 GO:0009409 GO:0009628 GO:0009987 GO:0016054 GO:0016289 GO:0016787 GO:0016788 GO:0016790 GO:0019752 GO:0043436 GO:0044237 GO:0044238 GO:0044248 GO:0044281 GO:0044282 GO:0046395 GO:0050896 GO:0071704 GO:1901564 GO:1901565 GO:1901575 GO:1901605 GO:1901606

KEGG Pathways

Metabolic & Signaling

ko00280 ko00410 ko00640 ko01100 ko01200 map00280 map00410 map00640 map01100 map01200

Pfam Domains

Protein Families

ECH_2

Protein Analysis

172

Amino Acids

19.07

Weight (kDa)

9.35

Isoelectric Point (pI)

32.24

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ECH_1	PF00378	75 - 127	1.1e-07	Enoyl-CoA hydratase/isomerase
ECH_2	PF16113	76 - 140	1.6e-15	Enoyl-CoA hydratase/isomerase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0018588)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr4g0410201
rosa_laevigata	RLG00000008447 RLG00000022499 RLG00000023832
rosa_multiflora	Rmu_co8422681.1_g000001 Rmu_sc0007314.1_g000003 Rmu_sc0012324.1_g000008
rosa_roxburghii	Rroxscaffold_5G00354990
rosa_samantha	Rh4CG171400 Rh4DG005800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	17
AciI	CCGC	6 cut(s)	9, 12, 17, 211, 214, 368
AclWI	GGATC	1 cut(s)	163
AcoI	YGGCCR	1 cut(s)	113
AcsI	RAATTY	1 cut(s)	39
AfiI	CCNNNNNNNGG	2 cut(s)	11, 213
AgsI	TTSAA	1 cut(s)	106
AluBI	AGCT	1 cut(s)	495
AluI	AGCT	1 cut(s)	495
Alw21I	GWGCWC	1 cut(s)	415
Alw44I	GTGCAC	1 cut(s)	411
AlwI	GGATC	1 cut(s)	163
AoxI	GGCC	2 cut(s)	113, 227
ApaLI	GTGCAC	1 cut(s)	411
ApeKI	GCWGC	1 cut(s)	487
ApoI	RAATTY	1 cut(s)	39
AseI	ATTAAT	1 cut(s)	387
AspLEI	GCGC	1 cut(s)	17
AsuHPI	GGTGA	2 cut(s)	331, 371
BaeGI	GKGCMC	1 cut(s)	415
BalI	TGGCCA	1 cut(s)	115
BbsI	GAAGAC	1 cut(s)	303
Bbv12I	GWGCWC	1 cut(s)	415
BbvI	GCAGC	1 cut(s)	474
BccI	CCATC	1 cut(s)	175
BfaI	CTAG	3 cut(s)	144, 354, 425
BfmI	CTRYAG	1 cut(s)	488
BisI	GCNGC	6 cut(s)	10, 13, 212, 215, 369, 488
BlsI	GCNGC	6 cut(s)	11, 14, 213, 216, 370, 489
BmiI	GGNNCC	1 cut(s)	87
BmsI	GCATC	3 cut(s)	112, 193, 292
BpiI	GAAGAC	1 cut(s)	303
BpuEI	CTTGAG	1 cut(s)	311
BsaJI	CCNNGG	1 cut(s)	230
BsaXI	ACNNNNNCTCC	4 cut(s)	13, 43, 394, 424
Bsc4I	CCNNNNNNNGG	2 cut(s)	11, 213
BseDI	CCNNGG	1 cut(s)	230
BseLI	CCNNNNNNNGG	2 cut(s)	11, 213
BseRI	GAGGAG	1 cut(s)	472
BseSI	GKGCMC	1 cut(s)	415
BseXI	GCAGC	1 cut(s)	474
Bsh1236I	CGCG	1 cut(s)	17
BshFI	GGCC	2 cut(s)	115, 229
BsiHKAI	GWGCWC	1 cut(s)	415
BslFI	GGGAC	1 cut(s)	204
BslI	CCNNNNNNNGG	2 cut(s)	11, 213
BsmFI	GGGAC	1 cut(s)	204
BsmI	GAATGC	1 cut(s)	247
BsnI	GGCC	2 cut(s)	115, 229
Bsp1286I	GDGCHC	1 cut(s)	415
Bsp143I	GATC	3 cut(s)	154, 168, 175
BspACI	CCGC	6 cut(s)	9, 12, 17, 211, 214, 368
BspANI	GGCC	2 cut(s)	115, 229
BspFNI	CGCG	1 cut(s)	17
BspLI	GGNNCC	1 cut(s)	87
BspMAI	CTGCAG	1 cut(s)	492
BspPI	GGATC	1 cut(s)	163
BspQI	GCTCTTC	1 cut(s)	334
BssECI	CCNNGG	1 cut(s)	230
BssMI	GATC	3 cut(s)	154, 168, 175
Bst4CI	ACNGT	2 cut(s)	273, 502
Bst6I	CTCTTC	1 cut(s)	334
BstAPI	GCANNNNNTGC	1 cut(s)	350
BstFNI	CGCG	1 cut(s)	17
BstHHI	GCGC	1 cut(s)	17
BstKTI	GATC	3 cut(s)	157, 171, 178
BstMBI	GATC	3 cut(s)	154, 168, 175
BstMWI	GCNNNNNNNGC	1 cut(s)	350
BstNSI	RCATGY	1 cut(s)	199
BstSFI	CTRYAG	1 cut(s)	488
BstSLI	GKGCMC	1 cut(s)	415
BstUI	CGCG	1 cut(s)	17
BstV1I	GCAGC	1 cut(s)	474
BstV2I	GAAGAC	1 cut(s)	303
BsuRI	GGCC	2 cut(s)	115, 229
BtsIMutI	CAGTG	1 cut(s)	164
CfoI	GCGC	1 cut(s)	17
CseI	GACGC	1 cut(s)	201
CviAII	CATG	3 cut(s)	6, 196, 208
CviJI	RGCY	9 cut(s)	53, 59, 78, 115, 143, 229, 371, 487, 495
CviKI_1	RGCY	9 cut(s)	53, 59, 78, 115, 143, 229, 371, 487, 495
DpnI	GATC	3 cut(s)	156, 170, 177
DpnII	GATC	3 cut(s)	154, 168, 175
DraI	TTTAAA	1 cut(s)	256
EaeI	YGGCCR	1 cut(s)	113
Eam1104I	CTCTTC	1 cut(s)	334
EarI	CTCTTC	1 cut(s)	334
Eco147I	AGGCCT	1 cut(s)	229
FaeI	CATG	3 cut(s)	9, 199, 211
FaiI	YATR	8 cut(s)	7, 56, 197, 201, 209, 292, 294, 498
FaqI	GGGAC	1 cut(s)	204
FatI	CATG	3 cut(s)	5, 195, 207
FauI	CCCGC	1 cut(s)	10
FauNDI	CATATG	1 cut(s)	292
Fnu4HI	GCNGC	6 cut(s)	10, 13, 212, 215, 369, 488
Fsp4HI	GCNGC	6 cut(s)	10, 13, 212, 215, 369, 488
FspBI	CTAG	3 cut(s)	144, 354, 425
GlaI	GCGC	1 cut(s)	16
GluI	GCNGC	6 cut(s)	10, 13, 212, 215, 369, 488
HaeIII	GGCC	2 cut(s)	115, 229
HgaI	GACGC	1 cut(s)	201
HhaI	GCGC	1 cut(s)	17
Hin1II	CATG	3 cut(s)	9, 199, 211
Hin6I	GCGC	1 cut(s)	15
HinP1I	GCGC	1 cut(s)	15
HinfI	GANTC	1 cut(s)	322
HphI	GGTGA	2 cut(s)	331, 371
Hpy166II	GTNNAC	1 cut(s)	413
Hpy188I	TCNGA	4 cut(s)	90, 180, 480, 506
Hpy188III	TCNNGA	1 cut(s)	380
Hpy8I	GTNNAC	1 cut(s)	413
HpyAV	CCTTC	1 cut(s)	386
HpyCH4III	ACNGT	2 cut(s)	273, 502
HpyCH4V	TGCA	4 cut(s)	125, 290, 413, 490
HpyF10VI	GCNNNNNNNGC	1 cut(s)	350
Hsp92II	CATG	3 cut(s)	9, 199, 211
HspAI	GCGC	1 cut(s)	15
Kzo9I	GATC	3 cut(s)	154, 168, 175
LguI	GCTCTTC	1 cut(s)	334
LpnPI	CCDG	1 cut(s)	11
Lsp1109I	GCAGC	1 cut(s)	474
LweI	GCATC	3 cut(s)	112, 193, 292
MaeI	CTAG	3 cut(s)	144, 354, 425
MaeIII	GTNAC	1 cut(s)	267
MalI	GATC	3 cut(s)	156, 170, 177
MboI	GATC	3 cut(s)	154, 168, 175
MboII	GAAGA	2 cut(s)	308, 351
MfeI	CAATTG	1 cut(s)	117
MhlI	GDGCHC	1 cut(s)	415
MlsI	TGGCCA	1 cut(s)	115
MluCI	AATT	3 cut(s)	39, 117, 397
MluNI	TGGCCA	1 cut(s)	115
MmeI	TCCRAC	2 cut(s)	255, 484
MnlI	CCTC	6 cut(s)	15, 133, 181, 219, 240, 450
Mox20I	TGGCCA	1 cut(s)	115
MscI	TGGCCA	1 cut(s)	115
MseI	TTAA	3 cut(s)	249, 255, 387
Msp20I	TGGCCA	1 cut(s)	115
MunI	CAATTG	1 cut(s)	117
Mva1269I	GAATGC	1 cut(s)	247
MvnI	CGCG	1 cut(s)	17
MwoI	GCNNNNNNNGC	1 cut(s)	350
NdeI	CATATG	1 cut(s)	292
NdeII	GATC	3 cut(s)	154, 168, 175
NlaIII	CATG	3 cut(s)	9, 199, 211
NlaIV	GGNNCC	1 cut(s)	87
NmeAIII	GCCGAG	2 cut(s)	54, 211
NspI	RCATGY	1 cut(s)	199
PceI	AGGCCT	1 cut(s)	229
PciSI	GCTCTTC	1 cut(s)	334
PctI	GAATGC	1 cut(s)	247
PfeI	GAWTC	1 cut(s)	322
PkrI	GCNGC	6 cut(s)	11, 14, 213, 216, 370, 489
PshBI	ATTAAT	1 cut(s)	387
PspN4I	GGNNCC	1 cut(s)	87
PstI	CTGCAG	1 cut(s)	492
SapI	GCTCTTC	1 cut(s)	334
SaqAI	TTAA	3 cut(s)	249, 255, 387
SatI	GCNGC	6 cut(s)	10, 13, 212, 215, 369, 488
Sau3AI	GATC	3 cut(s)	154, 168, 175
SduI	GDGCHC	1 cut(s)	415
SetI	ASST	3 cut(s)	100, 412, 497
SfaNI	GCATC	3 cut(s)	112, 193, 292
SfcI	CTRYAG	1 cut(s)	488
SmlI	CTYRAG	1 cut(s)	326
SmoI	CTYRAG	1 cut(s)	326
Sse9I	AATT	3 cut(s)	39, 117, 397
SseBI	AGGCCT	1 cut(s)	229
SsiI	CCGC	6 cut(s)	9, 12, 17, 211, 214, 368
SspMI	CTAG	3 cut(s)	144, 354, 425
StuI	AGGCCT	1 cut(s)	229
TaaI	ACNGT	2 cut(s)	273, 502
TaqI	TCGA	1 cut(s)	153
TasI	AATT	3 cut(s)	39, 117, 397
TauI	GCSGC	5 cut(s)	12, 15, 214, 217, 371
TfiI	GAWTC	1 cut(s)	322
Tru1I	TTAA	3 cut(s)	249, 255, 387
Tru9I	TTAA	3 cut(s)	249, 255, 387
TscAI	CASTG	1 cut(s)	171
TseI	GCWGC	1 cut(s)	487
TspDTI	ATGAA	2 cut(s)	309, 405
TspGWI	ACGGA	1 cut(s)	161
TspRI	CASTG	1 cut(s)	171
VneI	GTGCAC	1 cut(s)	411
VspI	ATTAAT	1 cut(s)	387
XapI	RAATTY	1 cut(s)	39
XceI	RCATGY	1 cut(s)	199
XspI	CTAG	3 cut(s)	144, 354, 425

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.