Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0018176

Physical Location & Seq

Genomic Coordinates Forward (+)

35389018 .. 35390183

Gene Structure 1166 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ38235

Sequence Viewer

CDS Protein Promoter (2k)

Length: 531 bp

ATGTTTAAAGATGCACGCCACCTGCTTGAGAAAATGCCTAGCAGAGATGTTCATGATAGCATTGTTCGTTGGACTTGTTTGGTTACTAAGTACTCAAGAGGCGGTTGGGTCGATGAGGCTCGGGTGCTCTTTGATATCATGCCGGAGAGAAATGTGGTAACTTATAATGCTATGTTGTCCGGGTATGTGCAGTCAGGGAGGCTTGGGACACTTGATAACTGTGGTGGGAAATGGAGTGCTCTTGTGGATTGTTTAACTTTGAAGACGAAGCGGTCAGCTGAAGTGCAGGGCCTGTATACTTTGTTTCGGAAAATGCCTGAGAGGAACGTTGTTTCTTGGACAGCCATGATTGGTGGCTTTGCTTGGAATGGATTTTATAGAGAAGCTCTATTGTTATTCCTTGAATGGAATGGGAACTATGAAACAAGACCAAATGGTGAGACGTTCATATCGCTTGTATATGCTTGTGCTCGTATTTGGTTGCCTCATCTTGGAAAGCAACTACATGCTCAGTTGATTGTCAACAATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR

Protein Analysis

176

Amino Acids

20.22

Weight (kDa)

9.12

Isoelectric Point (pI)

41.44

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0018176)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr4g0411551 RchiOBHm_Chr7g0229601
rosa_laevigata	RLG00000008199 RLG00000008346
rosa_multiflora	Rmu_sc0003660.1_g000002 Rmu_sc0007538.1_g000014 Rmu_ssc0000281.1_g000012
rosa_rugosa	Rorug07G0192000
rosa_samantha	Rh4BG165600 Rh5AG246500 Rh5CG244600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	165
AarI	CACCTGC	1 cut(s)	30
AasI	GACNNNNNNGTC	1 cut(s)	271
Acc36I	ACCTGC	1 cut(s)	30
AccI	GTMKAC	1 cut(s)	296
AciI	CCGC	2 cut(s)	102, 271
AclI	AACGTT	1 cut(s)	327
AcuI	CTGAAG	1 cut(s)	300
AfaI	GTAC	1 cut(s)	92
AfiI	CCNNNNNNNGG	1 cut(s)	491
AgsI	TTSAA	2 cut(s)	262, 404
AluBI	AGCT	2 cut(s)	278, 386
AluI	AGCT	2 cut(s)	278, 386
Alw21I	GWGCWC	3 cut(s)	129, 241, 472
Alw26I	GTCTC	1 cut(s)	434
AlwNI	CAGNNNCTG	1 cut(s)	292
Ama87I	CYCGRG	1 cut(s)	120
AoxI	GGCC	1 cut(s)	289
AspS9I	GGNCC	1 cut(s)	289
AsuC2I	CCSGG	1 cut(s)	181
AsuHPI	GGTGA	1 cut(s)	449
AvaI	CYCGRG	1 cut(s)	120
BbsI	GAAGAC	1 cut(s)	269
Bbv12I	GWGCWC	3 cut(s)	129, 241, 472
BcnI	CCSGG	1 cut(s)	181
BcoDI	GTCTC	1 cut(s)	434
BfaI	CTAG	1 cut(s)	39
BfuAI	ACCTGC	1 cut(s)	30
BmcAI	AGTACT	1 cut(s)	92
Bme1390I	CCNGG	1 cut(s)	181
BmeT110I	CYCGRG	1 cut(s)	120
BmgT120I	GGNCC	1 cut(s)	289
BmrFI	CCNGG	1 cut(s)	181
BpiI	GAAGAC	1 cut(s)	269
BpuEI	CTTGAG	2 cut(s)	47, 79
BpuMI	CCSGG	1 cut(s)	181
Bsc4I	CCNNNNNNNGG	1 cut(s)	491
BseLI	CCNNNNNNNGG	1 cut(s)	491
BseMII	CTCAG	2 cut(s)	309, 524
BsgI	GTGCAG	2 cut(s)	209, 305
BshFI	GGCC	1 cut(s)	291
BsiHKAI	GWGCWC	3 cut(s)	129, 241, 472
BsiHKCI	CYCGRG	1 cut(s)	120
BsiSI	CCGG	2 cut(s)	143, 180
BslFI	GGGAC	1 cut(s)	220
BslI	CCNNNNNNNGG	1 cut(s)	491
BsmAI	GTCTC	1 cut(s)	434
BsmBI	CGTCTC	1 cut(s)	434
BsmFI	GGGAC	1 cut(s)	220
BsnI	GGCC	1 cut(s)	291
BsoBI	CYCGRG	1 cut(s)	120
Bsp1286I	GDGCHC	3 cut(s)	129, 241, 472
BspACI	CCGC	2 cut(s)	102, 271
BspANI	GGCC	1 cut(s)	291
BspCNI	CTCAG	2 cut(s)	310, 523
BspHI	TCATGA	1 cut(s)	52
BspMI	ACCTGC	1 cut(s)	30
BssNAI	GTATAC	1 cut(s)	297
Bst1107I	GTATAC	1 cut(s)	297
Bst4CI	ACNGT	1 cut(s)	221
BstC8I	GCNNGC	1 cut(s)	16
BstDEI	CTNAG	3 cut(s)	87, 318, 510
BstMAI	GTCTC	1 cut(s)	434
BstNSI	RCATGY	1 cut(s)	509
BstSCI	CCNGG	1 cut(s)	179
BstV2I	GAAGAC	1 cut(s)	269
BstZ17I	GTATAC	1 cut(s)	297
BsuRI	GGCC	1 cut(s)	291
BveI	ACCTGC	1 cut(s)	30
Cac8I	GCNNGC	1 cut(s)	16
CaiI	CAGNNNCTG	1 cut(s)	292
CciI	TCATGA	1 cut(s)	52
Cfr13I	GGNCC	1 cut(s)	289
Csp6I	GTAC	1 cut(s)	91
CviAII	CATG	4 cut(s)	53, 139, 346, 506
CviJI	RGCY	7 cut(s)	119, 202, 278, 291, 344, 357, 386
CviKI_1	RGCY	7 cut(s)	119, 202, 278, 291, 344, 357, 386
CviQI	GTAC	1 cut(s)	91
DdeI	CTNAG	3 cut(s)	87, 318, 510
DraI	TTTAAA	1 cut(s)	7
DrdI	GACNNNNNNGTC	1 cut(s)	271
DseDI	GACNNNNNNGTC	1 cut(s)	271
Eco32I	GATATC	1 cut(s)	136
Eco57I	CTGAAG	1 cut(s)	300
Eco88I	CYCGRG	1 cut(s)	120
EcoO109I	RGGNCCY	1 cut(s)	289
EcoRV	GATATC	1 cut(s)	136
Esp3I	CGTCTC	1 cut(s)	434
FaeI	CATG	4 cut(s)	56, 142, 349, 509
FaqI	GGGAC	1 cut(s)	220
FatI	CATG	4 cut(s)	52, 138, 345, 505
FblI	GTMKAC	1 cut(s)	296
FspBI	CTAG	1 cut(s)	39
HaeIII	GGCC	1 cut(s)	291
HapII	CCGG	2 cut(s)	143, 180
Hin1II	CATG	4 cut(s)	56, 142, 349, 509
HincII	GTYRAC	1 cut(s)	523
HindII	GTYRAC	1 cut(s)	523
HpaII	CCGG	2 cut(s)	143, 180
HphI	GGTGA	1 cut(s)	449
Hpy166II	GTNNAC	2 cut(s)	297, 523
Hpy188I	TCNGA	1 cut(s)	309
Hpy188III	TCNNGA	2 cut(s)	53, 96
Hpy8I	GTNNAC	2 cut(s)	297, 523
HpyCH4III	ACNGT	1 cut(s)	221
HpyCH4IV	ACGT	2 cut(s)	327, 443
HpyCH4V	TGCA	3 cut(s)	14, 190, 286
HpyF3I	CTNAG	3 cut(s)	87, 318, 510
HpySE526I	ACGT	2 cut(s)	327, 443
Hsp92II	CATG	4 cut(s)	56, 142, 349, 509
LpnPI	CCDG	7 cut(s)	35, 156, 180, 193, 272, 305, 330
MaeI	CTAG	1 cut(s)	39
MaeII	ACGT	2 cut(s)	327, 443
MaeIII	GTNAC	2 cut(s)	82, 157
MboII	GAAGA	1 cut(s)	274
MhlI	GDGCHC	3 cut(s)	129, 241, 472
MluCI	AATT	1 cut(s)	526
MmeI	TCCRAC	1 cut(s)	50
MnlI	CCTC	5 cut(s)	92, 109, 192, 315, 495
MseI	TTAA	2 cut(s)	6, 254
MspA1I	CMGCKG	1 cut(s)	278
MspI	CCGG	2 cut(s)	143, 180
MspR9I	CCNGG	1 cut(s)	181
NciI	CCSGG	1 cut(s)	181
NlaIII	CATG	4 cut(s)	56, 142, 349, 509
NspI	RCATGY	1 cut(s)	509
PagI	TCATGA	1 cut(s)	52
PaqCI	CACCTGC	1 cut(s)	30
PsiI	TTATAA	1 cut(s)	165
Psp1406I	AACGTT	1 cut(s)	327
PspPI	GGNCC	1 cut(s)	289
PstNI	CAGNNNCTG	1 cut(s)	292
PvuII	CAGCTG	1 cut(s)	278
RsaI	GTAC	1 cut(s)	92
RsaNI	GTAC	1 cut(s)	91
SaqAI	TTAA	2 cut(s)	6, 254
Sau96I	GGNCC	1 cut(s)	289
ScaI	AGTACT	1 cut(s)	92
ScrFI	CCNGG	1 cut(s)	181
SduI	GDGCHC	3 cut(s)	129, 241, 472
SetI	ASST	5 cut(s)	24, 280, 330, 388, 446
SmlI	CTYRAG	2 cut(s)	26, 94
SmoI	CTYRAG	2 cut(s)	26, 94
Sse9I	AATT	1 cut(s)	526
SsiI	CCGC	2 cut(s)	102, 271
SspMI	CTAG	1 cut(s)	39
StyD4I	CCNGG	1 cut(s)	179
TaaI	ACNGT	1 cut(s)	221
TaiI	ACGT	2 cut(s)	330, 446
TaqI	TCGA	1 cut(s)	111
TasI	AATT	1 cut(s)	526
TatI	WGTACW	1 cut(s)	90
Tru1I	TTAA	2 cut(s)	6, 254
Tru9I	TTAA	2 cut(s)	6, 254
TspDTI	ATGAA	3 cut(s)	41, 435, 436
XceI	RCATGY	1 cut(s)	509
XmiI	GTMKAC	1 cut(s)	296
XspI	CTAG	1 cut(s)	39
ZrmI	AGTACT	1 cut(s)	92

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.