Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0018176

Physical Location & Seq

Genomic Coordinates Forward (+)

26967334 .. 26968192

Gene Structure 859 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000008199

Sequence Viewer

CDS Protein Promoter (2k)

Length: 774 bp

ATGCCTAGCAGAGATGTTCATGATAGCATTGTTCGTTGGACTTGTTTAGTTACTAAGTACTCGAGAGGCGGTTGGGTCGATGAGGCTTGGGTGCTGTTTGATATCATGCCGGAGAGAAATGTGGTAACTTATAATGTTATGTTGTCCGGGTATGTGCAGTCAGGGAGGTTGAGTGAGGGTTGTCAGTTTTTTGATGAGATGCCGGAGAGGAATGTGGTGTTGTGGACTTCGATGCTGTGTGGGTTAGCTTGTGTGGGAAGGATAGAGGAGGCGAGGCGATTGTTTGAGGAAATGCCAGAGAGGAATGTTGTTTCTTGGAATTCTATGATTGCTGGGTTGGTTAAGAATGGGGACTTGGAGGGAGCACGGGAGGTTTTTGATTGGATGAGGATGAAGAATGTTGTTTCTTATAATGCTATGATTGGTGGGTATGCGGAGCATTGTAGAATGGATGAGGCGAGAGCTTTGTTTGATGGGATGCTGGATAGGAATGTGATTACTTGGACTAGCATGATATCTGCCATGATTGGTGGCTTTGCTTGGAATGGATTTTATAGAGAAGCTCTATTGTTATTCCTTGAATGGAATGGAAACTATGAAACAAGACCAAATGGAGAGACGTTCACATCGCTTGTATATGCTTGTGCTGGTAATTGGTTGCCTCATCTTGGAAAGCAACTACATGCTCAGTTGATTGTCAACAATTGGGACCATGTTGATTATGATGGCAGGCTATCAAAGAGCCTCATTCACATGCTCAGTTCATTTTTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR

Protein Analysis

258

Amino Acids

29.55

Weight (kDa)

5.29

Isoelectric Point (pI)

39.57

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	39 - 72	9.6e-09	PPR repeat family
PPR_1	PF12854	39 - 67	8.7e-07	PPR repeat
PPR	PF01535	42 - 72	2.2e-08	PPR repeat
PPR_2	PF13041	70 - 103	3.3e-06	PPR repeat family
PPR	PF01535	73 - 103	4.5e-07	PPR repeat
PPR_2	PF13041	101 - 134	1.1e-08	PPR repeat family
PPR	PF01535	104 - 133	7e-07	PPR repeat
PPR_2	PF13041	132 - 174	5.1e-09	PPR repeat family
PPR	PF01535	135 - 165	3.9e-07	PPR repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0018176)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr4g0411551 RchiOBHm_Chr7g0229601
rosa_laevigata	RLG00000008199 RLG00000008346
rosa_multiflora	Rmu_sc0003660.1_g000002 Rmu_sc0007538.1_g000014 Rmu_ssc0000281.1_g000012
rosa_rugosa	Rorug07G0192000
rosa_samantha	Rh4BG165600 Rh5AG246500 Rh5CG244600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	132, 411
AciI	CCGC	2 cut(s)	69, 434
AcsI	RAATTY	1 cut(s)	319
AfaI	GTAC	1 cut(s)	59
AfiI	CCNNNNNNNGG	1 cut(s)	668
AgsI	TTSAA	1 cut(s)	581
AjuI	GAANNNNNNNTTGG	2 cut(s)	338, 370
AluBI	AGCT	3 cut(s)	248, 464, 563
AluI	AGCT	3 cut(s)	248, 464, 563
Alw21I	GWGCWC	1 cut(s)	367
Alw26I	GTCTC	1 cut(s)	611
Ama87I	CYCGRG	1 cut(s)	61
ApoI	RAATTY	1 cut(s)	319
AspS9I	GGNCC	1 cut(s)	709
AsuC2I	CCSGG	1 cut(s)	148
AvaI	CYCGRG	1 cut(s)	61
AvaII	GGWCC	1 cut(s)	709
Bbv12I	GWGCWC	1 cut(s)	367
BccI	CCATC	2 cut(s)	467, 719
BcnI	CCSGG	1 cut(s)	148
BcoDI	GTCTC	1 cut(s)	611
BfaI	CTAG	2 cut(s)	6, 507
BmcAI	AGTACT	1 cut(s)	59
Bme1390I	CCNGG	1 cut(s)	148
Bme18I	GGWCC	1 cut(s)	709
BmeT110I	CYCGRG	1 cut(s)	61
BmgT120I	GGNCC	1 cut(s)	709
BmiI	GGNNCC	1 cut(s)	710
BmrFI	CCNGG	1 cut(s)	148
BmsI	GCATC	3 cut(s)	189, 222, 468
BpuMI	CCSGG	1 cut(s)	148
BsaXI	ACNNNNNCTCC	2 cut(s)	157, 187
Bsc4I	CCNNNNNNNGG	1 cut(s)	668
BseGI	GGATG	4 cut(s)	390, 396, 457, 483
BseLI	CCNNNNNNNGG	1 cut(s)	668
BseMII	CTCAG	2 cut(s)	701, 772
BseRI	GAGGAG	1 cut(s)	281
BseYI	CCCAGC	1 cut(s)	332
BsgI	GTGCAG	1 cut(s)	176
BsiHKAI	GWGCWC	1 cut(s)	367
BsiHKCI	CYCGRG	1 cut(s)	61
BsiSI	CCGG	3 cut(s)	110, 147, 203
BslFI	GGGAC	2 cut(s)	365, 722
BslI	CCNNNNNNNGG	1 cut(s)	668
BsmAI	GTCTC	1 cut(s)	611
BsmBI	CGTCTC	1 cut(s)	611
BsmFI	GGGAC	2 cut(s)	365, 722
BsoBI	CYCGRG	1 cut(s)	61
Bsp1286I	GDGCHC	1 cut(s)	367
BspACI	CCGC	2 cut(s)	69, 434
BspCNI	CTCAG	2 cut(s)	700, 771
BspHI	TCATGA	1 cut(s)	19
BspLI	GGNNCC	1 cut(s)	710
BstC8I	GCNNGC	1 cut(s)	731
BstDEI	CTNAG	3 cut(s)	54, 687, 758
BstF5I	GGATG	4 cut(s)	390, 396, 457, 483
BstMAI	GTCTC	1 cut(s)	611
BstNSI	RCATGY	2 cut(s)	686, 757
BstSCI	CCNGG	1 cut(s)	146
BtgZI	GCGATG	1 cut(s)	612
BtsCI	GGATG	4 cut(s)	390, 396, 457, 483
Cac8I	GCNNGC	1 cut(s)	731
CciI	TCATGA	1 cut(s)	19
Cfr13I	GGNCC	1 cut(s)	709
Csp6I	GTAC	1 cut(s)	58
CviAII	CATG	7 cut(s)	20, 106, 511, 523, 683, 713, 754
CviJI	RGCY	7 cut(s)	86, 248, 464, 534, 563, 733, 744
CviKI_1	RGCY	7 cut(s)	86, 248, 464, 534, 563, 733, 744
CviQI	GTAC	1 cut(s)	58
DdeI	CTNAG	3 cut(s)	54, 687, 758
Eco32I	GATATC	2 cut(s)	103, 516
Eco47I	GGWCC	1 cut(s)	709
Eco88I	CYCGRG	1 cut(s)	61
EcoRI	GAATTC	1 cut(s)	319
EcoRV	GATATC	2 cut(s)	103, 516
Esp3I	CGTCTC	1 cut(s)	611
FaeI	CATG	7 cut(s)	23, 109, 514, 526, 686, 716, 757
FaqI	GGGAC	2 cut(s)	365, 722
FatI	CATG	7 cut(s)	19, 105, 510, 522, 682, 712, 753
FokI	GGATG	4 cut(s)	397, 403, 464, 490
FspBI	CTAG	2 cut(s)	6, 507
GsaI	CCCAGC	1 cut(s)	336
HapII	CCGG	3 cut(s)	110, 147, 203
Hin1II	CATG	7 cut(s)	23, 109, 514, 526, 686, 716, 757
HincII	GTYRAC	1 cut(s)	700
HindII	GTYRAC	1 cut(s)	700
HpaII	CCGG	3 cut(s)	110, 147, 203
Hpy166II	GTNNAC	3 cut(s)	225, 624, 700
Hpy188III	TCNNGA	2 cut(s)	20, 63
Hpy8I	GTNNAC	3 cut(s)	225, 624, 700
HpyAV	CCTTC	1 cut(s)	252
HpyCH4IV	ACGT	1 cut(s)	620
HpyCH4V	TGCA	1 cut(s)	157
HpyF3I	CTNAG	3 cut(s)	54, 687, 758
HpySE526I	ACGT	1 cut(s)	620
Hsp92II	CATG	7 cut(s)	23, 109, 514, 526, 686, 716, 757
LmnI	GCTCC	2 cut(s)	362, 436
LpnPI	CCDG	9 cut(s)	123, 147, 160, 216, 309, 318, 467, 633, 715
LweI	GCATC	3 cut(s)	189, 222, 468
MaeI	CTAG	2 cut(s)	6, 507
MaeII	ACGT	1 cut(s)	620
MaeIII	GTNAC	2 cut(s)	49, 124
MboII	GAAGA	1 cut(s)	406
MfeI	CAATTG	1 cut(s)	703
MhlI	GDGCHC	1 cut(s)	367
MluCI	AATT	3 cut(s)	319, 652, 703
MmeI	TCCRAC	1 cut(s)	17
MseI	TTAA	1 cut(s)	342
MslI	CAYNNNNRTG	1 cut(s)	752
MspI	CCGG	3 cut(s)	110, 147, 203
MspR9I	CCNGG	1 cut(s)	148
MunI	CAATTG	1 cut(s)	703
NciI	CCSGG	1 cut(s)	148
NlaIII	CATG	7 cut(s)	23, 109, 514, 526, 686, 716, 757
NlaIV	GGNNCC	1 cut(s)	710
NspI	RCATGY	2 cut(s)	686, 757
PaeR7I	CTCGAG	1 cut(s)	61
PagI	TCATGA	1 cut(s)	19
PsiI	TTATAA	2 cut(s)	132, 411
PspFI	CCCAGC	1 cut(s)	332
PspN4I	GGNNCC	1 cut(s)	710
PspPI	GGNCC	1 cut(s)	709
RsaI	GTAC	1 cut(s)	59
RsaNI	GTAC	1 cut(s)	58
RseI	CAYNNNNRTG	1 cut(s)	752
SaqAI	TTAA	1 cut(s)	342
Sau96I	GGNCC	1 cut(s)	709
ScaI	AGTACT	1 cut(s)	59
ScrFI	CCNGG	1 cut(s)	148
SduI	GDGCHC	1 cut(s)	367
SetI	ASST	6 cut(s)	170, 250, 375, 466, 565, 623
SfaNI	GCATC	3 cut(s)	189, 222, 468
Sfr274I	CTCGAG	1 cut(s)	61
SinI	GGWCC	1 cut(s)	709
SlaI	CTCGAG	1 cut(s)	61
SmiMI	CAYNNNNRTG	1 cut(s)	752
SmlI	CTYRAG	1 cut(s)	61
SmoI	CTYRAG	1 cut(s)	61
Sse9I	AATT	3 cut(s)	319, 652, 703
SsiI	CCGC	2 cut(s)	69, 434
SspMI	CTAG	2 cut(s)	6, 507
StyD4I	CCNGG	1 cut(s)	146
TaiI	ACGT	1 cut(s)	623
TaqI	TCGA	3 cut(s)	62, 78, 230
TasI	AATT	3 cut(s)	319, 652, 703
TatI	WGTACW	1 cut(s)	57
Tru1I	TTAA	1 cut(s)	342
Tru9I	TTAA	1 cut(s)	342
TspDTI	ATGAA	4 cut(s)	8, 407, 612, 753
VpaK11BI	GGWCC	1 cut(s)	709
XapI	RAATTY	1 cut(s)	319
XceI	RCATGY	2 cut(s)	686, 757
XhoI	CTCGAG	1 cut(s)	61
XspI	CTAG	2 cut(s)	6, 507
ZrmI	AGTACT	1 cut(s)	59

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.