Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000281.1

Orthogroup ID

OG0018176

Physical Location & Seq

Genomic Coordinates Forward (+)

46271 .. 49593

Gene Structure 3323 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000281.1_g000012.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1005 bp

atgcctagcagagatgttcatgatagcattgttcgttggacttgtttggttactaagtactcgagaggcggttgggttgatgaggctcgggttctgtttgatatcatgccggagagaaatgtggtaacttataatgctatgttgtccgagtatgtgcaatcagggaggttgagtgagggttgtcagttttttgatgagatgttggagaggaatgtggtgtcgtggacttcgatgctatgtgggttagcttgtgcggggaggattgaggaggcgaggtggttgtttgaggaaatgccagagaggaatgttgtttcttggaattctatgaatgctgggttggttaagaatggggacttagagggagcacgggaggtttttgaccagatgcggatgaagaatgttgtttcttgtaatgctatgattggtgggtatgcagtgcgttgtagaatggatgaggcgagagttttgtttgatgggatgctggataggaatgtgattacttggactaacatgatatctggttattataggtctggcaatgtggatgaagggccagtctccaccaccgccgctttgttatcgtcgtcggaccaccccaggaggacaccatccaactccacgatcccatccctacgcaacctggatccagattggggatccagacccgagaggaaacctgcccaaacaccgcccctctccatccctccacctactcatggtagcaccaccacctgtcccattgccgcatcgtggatccacccaacgtcgatcccatccctcaatgacagatcaaaccctggtgcagtcggatcagaaaataaatggttaaagaaacctccacaccatagcctccgactgtcggacctggccacaggcaacagaacccgtctgactacacgcacagtgcaaagacaaggccagtggcctatgccagcgctgaggcgcagccggaaaggcgcaatcccagccaacggcgttctctctagggttttctctctttcctaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR

Protein Analysis

334

Amino Acids

37.32

Weight (kDa)

9.17

Isoelectric Point (pI)

47.28

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0018176)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr4g0411551 RchiOBHm_Chr7g0229601
rosa_laevigata	RLG00000008199 RLG00000008346
rosa_multiflora	Rmu_sc0003660.1_g000002 Rmu_sc0007538.1_g000014 Rmu_ssc0000281.1_g000012
rosa_rugosa	Rorug07G0192000
rosa_samantha	Rh4BG165600 Rh5AG246500 Rh5CG244600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	132
Acc36I	ACCTGC	1 cut(s)	685
AciI	CCGC	7 cut(s)	69, 254, 388, 567, 570, 689, 744
AclWI	GGATC	9 cut(s)	616, 638, 651, 651, 664, 748, 761, 763, 817
AcoI	YGGCCR	1 cut(s)	867
AcsI	RAATTY	1 cut(s)	319
AfaI	GTAC	1 cut(s)	59
AfeI	AGCGCT	1 cut(s)	936
AfiI	CCNNNNNNNGG	5 cut(s)	653, 716, 750, 859, 971
AjnI	CCWGG	4 cut(s)	596, 639, 796, 864
AjuI	GAANNNNNNNTTGG	2 cut(s)	320, 352
AluBI	AGCT	1 cut(s)	248
AluI	AGCT	1 cut(s)	248
Alw21I	GWGCWC	1 cut(s)	367
Alw26I	GTCTC	1 cut(s)	562
AlwI	GGATC	9 cut(s)	616, 638, 651, 651, 664, 748, 761, 763, 817
Ama87I	CYCGRG	3 cut(s)	61, 87, 665
Aor51HI	AGCGCT	1 cut(s)	936
AoxI	GGCC	4 cut(s)	551, 867, 916, 923
ApeKI	GCWGC	1 cut(s)	945
ApoI	RAATTY	1 cut(s)	319
AspLEI	GCGC	3 cut(s)	937, 945, 959
AspS9I	GGNCC	3 cut(s)	551, 589, 862
AvaI	CYCGRG	3 cut(s)	61, 87, 665
AvaII	GGWCC	2 cut(s)	589, 862
BalI	TGGCCA	1 cut(s)	869
BamHI	GGATCC	3 cut(s)	643, 656, 753
Bbv12I	GWGCWC	1 cut(s)	367
BbvCI	CCTCAGC	1 cut(s)	938
BbvI	GCAGC	1 cut(s)	957
BccI	CCATC	5 cut(s)	467, 616, 634, 707, 781
BceAI	ACGGC	1 cut(s)	988
BciT130I	CCWGG	4 cut(s)	598, 641, 798, 866
BcoDI	GTCTC	1 cut(s)	562
BfaI	CTAG	2 cut(s)	6, 984
BfoI	RGCGCY	1 cut(s)	938
BfuAI	ACCTGC	1 cut(s)	685
BglI	GCCNNNNNGGC	1 cut(s)	954
BisI	GCNGC	3 cut(s)	570, 744, 946
BlsI	GCNGC	3 cut(s)	571, 745, 947
BmcAI	AGTACT	1 cut(s)	59
Bme1390I	CCNGG	4 cut(s)	598, 641, 798, 866
Bme18I	GGWCC	2 cut(s)	589, 862
BmeT110I	CYCGRG	3 cut(s)	61, 87, 665
BmgT120I	GGNCC	3 cut(s)	551, 589, 862
BmiI	GGNNCC	3 cut(s)	645, 658, 755
BmrFI	CCNGG	4 cut(s)	598, 641, 798, 866
BmsI	GCATC	4 cut(s)	222, 375, 468, 755
Bpu10I	CCTNAGC	1 cut(s)	938
BsaJI	CCNNGG	2 cut(s)	596, 796
BsaXI	ACNNNNNCTCC	4 cut(s)	157, 187, 260, 290
Bsc4I	CCNNNNNNNGG	5 cut(s)	653, 716, 750, 859, 971
Bse1I	ACTGG	2 cut(s)	554, 919
Bse3DI	GCAATG	2 cut(s)	544, 738
BseBI	CCWGG	4 cut(s)	598, 641, 798, 866
BseDI	CCNNGG	2 cut(s)	596, 796
BseGI	GGATG	8 cut(s)	396, 457, 483, 550, 608, 626, 699, 773
BseLI	CCNNNNNNNGG	5 cut(s)	653, 716, 750, 859, 971
BseMI	GCAATG	2 cut(s)	544, 738
BseMII	CTCAG	1 cut(s)	929
BseNI	ACTGG	2 cut(s)	554, 919
BseRI	GAGGAG	1 cut(s)	281
BseXI	GCAGC	1 cut(s)	957
BseYI	CCCAGC	2 cut(s)	332, 964
BsgI	GTGCAG	1 cut(s)	822
BshFI	GGCC	4 cut(s)	553, 869, 918, 925
BsiHKAI	GWGCWC	1 cut(s)	367
BsiHKCI	CYCGRG	3 cut(s)	61, 87, 665
BsiSI	CCGG	2 cut(s)	110, 949
BslFI	GGGAC	2 cut(s)	365, 720
BslI	CCNNNNNNNGG	5 cut(s)	653, 716, 750, 859, 971
BsmAI	GTCTC	1 cut(s)	562
BsmFI	GGGAC	2 cut(s)	365, 720
BsmI	GAATGC	1 cut(s)	334
BsnI	GGCC	4 cut(s)	553, 869, 918, 925
BsoBI	CYCGRG	3 cut(s)	61, 87, 665
Bsp1286I	GDGCHC	1 cut(s)	367
Bsp143I	GATC	7 cut(s)	621, 643, 656, 753, 768, 788, 809
BspACI	CCGC	7 cut(s)	69, 254, 388, 567, 570, 689, 744
BspANI	GGCC	4 cut(s)	553, 869, 918, 925
BspCNI	CTCAG	1 cut(s)	930
BspHI	TCATGA	1 cut(s)	19
BspLI	GGNNCC	3 cut(s)	645, 658, 755
BspMI	ACCTGC	1 cut(s)	685
BspPI	GGATC	9 cut(s)	616, 638, 651, 651, 664, 748, 761, 763, 817
BsrDI	GCAATG	2 cut(s)	544, 738
BsrI	ACTGG	2 cut(s)	554, 919
BssECI	CCNNGG	2 cut(s)	596, 796
BssMI	GATC	7 cut(s)	621, 643, 656, 753, 768, 788, 809
Bst2UI	CCWGG	4 cut(s)	598, 641, 798, 866
Bst4CI	ACNGT	2 cut(s)	858, 904
BstC8I	GCNNGC	1 cut(s)	933
BstDEI	CTNAG	3 cut(s)	54, 355, 938
BstF5I	GGATG	8 cut(s)	396, 457, 483, 550, 608, 626, 699, 773
BstH2I	RGCGCY	1 cut(s)	938
BstHHI	GCGC	3 cut(s)	937, 945, 959
BstKTI	GATC	7 cut(s)	624, 646, 659, 756, 771, 791, 812
BstMAI	GTCTC	1 cut(s)	562
BstMBI	GATC	7 cut(s)	621, 643, 656, 753, 768, 788, 809
BstMWI	GCNNNNNNNGC	2 cut(s)	954, 965
BstNI	CCWGG	4 cut(s)	598, 641, 798, 866
BstSCI	CCNGG	4 cut(s)	596, 639, 796, 864
BstV1I	GCAGC	1 cut(s)	957
BstX2I	RGATCY	3 cut(s)	643, 656, 753
BstYI	RGATCY	3 cut(s)	643, 656, 753
BsuRI	GGCC	4 cut(s)	553, 869, 918, 925
BtsCI	GGATG	8 cut(s)	396, 457, 483, 550, 608, 626, 699, 773
BtsI	GCAGTG	1 cut(s)	441
BtsIMutI	CAGTG	3 cut(s)	441, 909, 926
BveI	ACCTGC	1 cut(s)	685
Cac8I	GCNNGC	1 cut(s)	933
CciI	TCATGA	1 cut(s)	19
CfoI	GCGC	3 cut(s)	937, 945, 959
Cfr13I	GGNCC	3 cut(s)	551, 589, 862
Csp6I	GTAC	1 cut(s)	58
CspCI	CAANNNNNGTGG	2 cut(s)	902, 937
CviAII	CATG	4 cut(s)	20, 106, 511, 716
CviJI	RGCY	9 cut(s)	86, 248, 553, 849, 869, 918, 925, 948, 968
CviKI_1	RGCY	9 cut(s)	86, 248, 553, 849, 869, 918, 925, 948, 968
CviQI	GTAC	1 cut(s)	58
DdeI	CTNAG	3 cut(s)	54, 355, 938
DpnI	GATC	7 cut(s)	623, 645, 658, 755, 770, 790, 811
DpnII	GATC	7 cut(s)	621, 643, 656, 753, 768, 788, 809
EaeI	YGGCCR	1 cut(s)	867
Eco32I	GATATC	2 cut(s)	103, 516
Eco47I	GGWCC	2 cut(s)	589, 862
Eco47III	AGCGCT	1 cut(s)	936
Eco88I	CYCGRG	3 cut(s)	61, 87, 665
EcoRI	GAATTC	1 cut(s)	319
EcoRII	CCWGG	4 cut(s)	596, 639, 796, 864
EcoRV	GATATC	2 cut(s)	103, 516
FaeI	CATG	4 cut(s)	23, 109, 514, 719
FaqI	GGGAC	2 cut(s)	365, 720
FatI	CATG	4 cut(s)	19, 105, 510, 715
FauI	CCCGC	1 cut(s)	247
Fnu4HI	GCNGC	3 cut(s)	570, 744, 946
FokI	GGATG	8 cut(s)	403, 464, 490, 557, 595, 613, 686, 760
Fsp4HI	GCNGC	3 cut(s)	570, 744, 946
FspBI	CTAG	2 cut(s)	6, 984
GlaI	GCGC	3 cut(s)	936, 944, 958
GluI	GCNGC	3 cut(s)	570, 744, 946
GsaI	CCCAGC	2 cut(s)	336, 968
HaeII	RGCGCY	1 cut(s)	938
HaeIII	GGCC	4 cut(s)	553, 869, 918, 925
HapII	CCGG	2 cut(s)	110, 949
HhaI	GCGC	3 cut(s)	937, 945, 959
Hin1II	CATG	4 cut(s)	23, 109, 514, 719
Hin6I	GCGC	3 cut(s)	935, 943, 957
HinP1I	GCGC	3 cut(s)	935, 943, 957
HpaII	CCGG	2 cut(s)	110, 949
Hpy166II	GTNNAC	1 cut(s)	225
Hpy188I	TCNGA	7 cut(s)	148, 589, 809, 814, 854, 862, 891
Hpy188III	TCNNGA	4 cut(s)	20, 63, 647, 660
Hpy8I	GTNNAC	1 cut(s)	225
Hpy99I	CGWCG	3 cut(s)	586, 589, 769
HpyAV	CCTTC	1 cut(s)	542
HpyCH4III	ACNGT	2 cut(s)	858, 904
HpyCH4IV	ACGT	1 cut(s)	764
HpyCH4V	TGCA	4 cut(s)	157, 434, 803, 907
HpyF10VI	GCNNNNNNNGC	2 cut(s)	954, 965
HpyF3I	CTNAG	3 cut(s)	54, 355, 938
HpySE526I	ACGT	1 cut(s)	764
Hsp92II	CATG	4 cut(s)	23, 109, 514, 719
HspAI	GCGC	3 cut(s)	935, 943, 957
Kzo9I	GATC	7 cut(s)	621, 643, 656, 753, 768, 788, 809
LmnI	GCTCC	1 cut(s)	362
Lsp1109I	GCAGC	1 cut(s)	957
LweI	GCATC	4 cut(s)	222, 375, 468, 755
MaeI	CTAG	2 cut(s)	6, 984
MaeII	ACGT	1 cut(s)	764
MaeIII	GTNAC	2 cut(s)	49, 124
MalI	GATC	7 cut(s)	623, 645, 658, 755, 770, 790, 811
MboI	GATC	7 cut(s)	621, 643, 656, 753, 768, 788, 809
MboII	GAAGA	1 cut(s)	406
MflI	RGATCY	3 cut(s)	643, 656, 753
MhlI	GDGCHC	1 cut(s)	367
MlsI	TGGCCA	1 cut(s)	869
MluCI	AATT	1 cut(s)	319
MluNI	TGGCCA	1 cut(s)	869
MmeI	TCCRAC	7 cut(s)	17, 183, 567, 636, 787, 840, 877
Mox20I	TGGCCA	1 cut(s)	869
MscI	TGGCCA	1 cut(s)	869
MseI	TTAA	2 cut(s)	342, 827
Msp20I	TGGCCA	1 cut(s)	869
MspI	CCGG	2 cut(s)	110, 949
MspR9I	CCNGG	4 cut(s)	598, 641, 798, 866
Mva1269I	GAATGC	1 cut(s)	334
MvaI	CCWGG	4 cut(s)	598, 641, 798, 866
MwoI	GCNNNNNNNGC	2 cut(s)	954, 965
NdeII	GATC	7 cut(s)	621, 643, 656, 753, 768, 788, 809
NlaIII	CATG	4 cut(s)	23, 109, 514, 719
NlaIV	GGNNCC	3 cut(s)	645, 658, 755
PaeR7I	CTCGAG	1 cut(s)	61
PagI	TCATGA	1 cut(s)	19
PcsI	WCGNNNNNNNCGW	1 cut(s)	227
PctI	GAATGC	1 cut(s)	334
PkrI	GCNGC	3 cut(s)	571, 745, 947
PsiI	TTATAA	1 cut(s)	132
Psp6I	CCWGG	4 cut(s)	596, 639, 796, 864
PspFI	CCCAGC	2 cut(s)	332, 964
PspGI	CCWGG	4 cut(s)	596, 639, 796, 864
PspN4I	GGNNCC	3 cut(s)	645, 658, 755
PspPI	GGNCC	3 cut(s)	551, 589, 862
PsuI	RGATCY	3 cut(s)	643, 656, 753
RsaI	GTAC	1 cut(s)	59
RsaNI	GTAC	1 cut(s)	58
SaqAI	TTAA	2 cut(s)	342, 827
SatI	GCNGC	3 cut(s)	570, 744, 946
Sau3AI	GATC	7 cut(s)	621, 643, 656, 753, 768, 788, 809
Sau96I	GGNCC	3 cut(s)	551, 589, 862
ScaI	AGTACT	1 cut(s)	59
ScrFI	CCNGG	4 cut(s)	598, 641, 798, 866
SduI	GDGCHC	1 cut(s)	367
SfaNI	GCATC	4 cut(s)	222, 375, 468, 755
Sfr274I	CTCGAG	1 cut(s)	61
SinI	GGWCC	2 cut(s)	589, 862
SlaI	CTCGAG	1 cut(s)	61
SmlI	CTYRAG	1 cut(s)	61
SmoI	CTYRAG	1 cut(s)	61
Sse9I	AATT	1 cut(s)	319
SsiI	CCGC	7 cut(s)	69, 254, 388, 567, 570, 689, 744
SspMI	CTAG	2 cut(s)	6, 984
StyD4I	CCNGG	4 cut(s)	596, 639, 796, 864
TaaI	ACNGT	2 cut(s)	858, 904
TaiI	ACGT	1 cut(s)	767
TaqI	TCGA	3 cut(s)	62, 230, 767
TasI	AATT	1 cut(s)	319
TatI	WGTACW	1 cut(s)	57
TauI	GCSGC	2 cut(s)	572, 746
Tru1I	TTAA	2 cut(s)	342, 827
Tru9I	TTAA	2 cut(s)	342, 827
TscAI	CASTG	3 cut(s)	441, 909, 926
TseI	GCWGC	1 cut(s)	945
TspDTI	ATGAA	4 cut(s)	8, 341, 407, 561
TspRI	CASTG	3 cut(s)	441, 909, 926
VpaK11BI	GGWCC	2 cut(s)	589, 862
XapI	RAATTY	1 cut(s)	319
XhoI	CTCGAG	1 cut(s)	61
XspI	CTAG	2 cut(s)	6, 984
ZrmI	AGTACT	1 cut(s)	59

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.