Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0018176

Physical Location & Seq

Genomic Coordinates Reverse (-)

25519561 .. 25521290

Gene Structure 1730 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG244600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 270 bp

ATGCCTAGCAGAGATGTTCATGATAGCATTGTTCGTTGGACTTGTTTGGTTACTATGTACTCGAGAGGCGGTTGGGTCGATGAGGCTCGGGTGCTGTTTGATATCATGCCCGAGAGAAATGTGCTAGCTGTTACCGATTTGTTTTCCCACAATTTGTTTTCTTTAATTGGCGATCGATATACTGCCGCAAAAGCCAACAAACTTCAAGATCGAGCTGTCACCAAGTCAGAAATATCAAACGGGGAGAACTTCAATGTTTTCCAAAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR

Protein Analysis

89

Amino Acids

10.19

Weight (kDa)

6.71

Isoelectric Point (pI)

44.88

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0018176)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr4g0411551 RchiOBHm_Chr7g0229601
rosa_laevigata	RLG00000008199 RLG00000008346
rosa_multiflora	Rmu_sc0003660.1_g000002 Rmu_sc0007538.1_g000014 Rmu_ssc0000281.1_g000012
rosa_rugosa	Rorug07G0192000
rosa_samantha	Rh4BG165600 Rh5AG246500 Rh5CG244600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	69, 186
AfaI	GTAC	1 cut(s)	59
AgsI	TTSAA	2 cut(s)	206, 253
AluBI	AGCT	2 cut(s)	128, 215
AluI	AGCT	2 cut(s)	128, 215
Ama87I	CYCGRG	3 cut(s)	61, 87, 110
AsuHPI	GGTGA	1 cut(s)	211
AsuNHI	GCTAGC	1 cut(s)	124
AvaI	CYCGRG	3 cut(s)	61, 87, 110
BfaI	CTAG	2 cut(s)	6, 125
BisI	GCNGC	1 cut(s)	186
BlsI	GCNGC	1 cut(s)	187
BmeT110I	CYCGRG	3 cut(s)	61, 87, 110
BmtI	GCTAGC	1 cut(s)	128
Bsa29I	ATCGAT	1 cut(s)	175
BseCI	ATCGAT	1 cut(s)	175
Bsh1285I	CGRYCG	1 cut(s)	175
BshVI	ATCGAT	1 cut(s)	175
BsiEI	CGRYCG	1 cut(s)	175
BsiHKCI	CYCGRG	3 cut(s)	61, 87, 110
BsoBI	CYCGRG	3 cut(s)	61, 87, 110
Bsp143I	GATC	2 cut(s)	172, 208
BspACI	CCGC	2 cut(s)	69, 186
BspDI	ATCGAT	1 cut(s)	175
BspHI	TCATGA	1 cut(s)	19
BspOI	GCTAGC	1 cut(s)	128
BssMI	GATC	2 cut(s)	172, 208
BstC8I	GCNNGC	1 cut(s)	126
BstKTI	GATC	2 cut(s)	175, 211
BstMBI	GATC	2 cut(s)	172, 208
BstMCI	CGRYCG	1 cut(s)	175
BstMWI	GCNNNNNNNGC	1 cut(s)	191
Bsu15I	ATCGAT	1 cut(s)	175
BsuTUI	ATCGAT	1 cut(s)	175
Cac8I	GCNNGC	1 cut(s)	126
CciI	TCATGA	1 cut(s)	19
ClaI	ATCGAT	1 cut(s)	175
Csp6I	GTAC	1 cut(s)	58
CviAII	CATG	2 cut(s)	20, 106
CviJI	RGCY	4 cut(s)	86, 128, 194, 215
CviKI_1	RGCY	4 cut(s)	86, 128, 194, 215
CviQI	GTAC	1 cut(s)	58
DpnI	GATC	2 cut(s)	174, 210
DpnII	GATC	2 cut(s)	172, 208
Eco32I	GATATC	1 cut(s)	103
Eco88I	CYCGRG	3 cut(s)	61, 87, 110
EcoRV	GATATC	1 cut(s)	103
FaeI	CATG	2 cut(s)	23, 109
FaiI	YATR	4 cut(s)	21, 56, 107, 180
FatI	CATG	2 cut(s)	19, 105
Fnu4HI	GCNGC	1 cut(s)	186
Fsp4HI	GCNGC	1 cut(s)	186
FspBI	CTAG	2 cut(s)	6, 125
GluI	GCNGC	1 cut(s)	186
Hin1II	CATG	2 cut(s)	23, 109
HphI	GGTGA	1 cut(s)	211
Hpy188I	TCNGA	1 cut(s)	229
Hpy188III	TCNNGA	3 cut(s)	20, 63, 206
HpyF10VI	GCNNNNNNNGC	1 cut(s)	191
Hsp92II	CATG	2 cut(s)	23, 109
Kzo9I	GATC	2 cut(s)	172, 208
MaeI	CTAG	2 cut(s)	6, 125
MaeIII	GTNAC	3 cut(s)	49, 130, 217
MalI	GATC	2 cut(s)	174, 210
MboI	GATC	2 cut(s)	172, 208
MluCI	AATT	2 cut(s)	151, 165
MmeI	TCCRAC	1 cut(s)	17
MnlI	CCTC	2 cut(s)	59, 76
MseI	TTAA	1 cut(s)	164
MwoI	GCNNNNNNNGC	1 cut(s)	191
NdeII	GATC	2 cut(s)	172, 208
NheI	GCTAGC	1 cut(s)	124
NlaIII	CATG	2 cut(s)	23, 109
NmuCI	GTSAC	1 cut(s)	217
PaeR7I	CTCGAG	1 cut(s)	61
PagI	TCATGA	1 cut(s)	19
PkrI	GCNGC	1 cut(s)	187
Ple19I	CGATCG	1 cut(s)	175
PvuI	CGATCG	1 cut(s)	175
RsaI	GTAC	1 cut(s)	59
RsaNI	GTAC	1 cut(s)	58
SaqAI	TTAA	1 cut(s)	164
SatI	GCNGC	1 cut(s)	186
Sau3AI	GATC	2 cut(s)	172, 208
SetI	ASST	2 cut(s)	130, 217
Sfr274I	CTCGAG	1 cut(s)	61
SlaI	CTCGAG	1 cut(s)	61
SmlI	CTYRAG	1 cut(s)	61
SmoI	CTYRAG	1 cut(s)	61
Sse9I	AATT	2 cut(s)	151, 165
SsiI	CCGC	2 cut(s)	69, 186
SspMI	CTAG	2 cut(s)	6, 125
TaqI	TCGA	4 cut(s)	62, 78, 175, 211
TasI	AATT	2 cut(s)	151, 165
TatI	WGTACW	1 cut(s)	57
TauI	GCSGC	1 cut(s)	188
Tru1I	TTAA	1 cut(s)	164
Tru9I	TTAA	1 cut(s)	164
TseFI	GTSAC	1 cut(s)	217
Tsp45I	GTSAC	1 cut(s)	217
TspDTI	ATGAA	1 cut(s)	8
XhoI	CTCGAG	1 cut(s)	61
XspI	CTAG	2 cut(s)	6, 125

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.