Rh5AG246500

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5A
OG0018176
Physical Location & Seq
Reverse (-)
30495470 .. 30496653
1184 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5AG246500.1

Sequence Viewer

Length: 321 bp
ATGTGGATGAAGGGCCGGTATGCTTTGTTTCGGAAAATGCCTGAGAGGAACGTTGTTTCTTGGACAACCATGATTGGTGGCTTTGCTTGGAACGGATTTTATAGAGAAGCTCTATTGTTATTCCTTGAATGGAATGGGAACTATGAAACAAGACCAAATGGAGAGACGTTCATATCGCTTGTATATGCTTGTGCTGGTATTTGGTTGCCTCATCTTGGAAAGCAACTACATGCTCAGTTGATTGTCAACAATTGGGACCATGTTGATTATGATGGCACGCTATCAAAGAGCCTTATTCACATGCTCAGTTCATTTTTGTAA

Protein Analysis

106

Amino Acids

12.39

Weight (kDa)

7.93

Isoelectric Point (pI)

32.02

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR PF01535 19 - 43 9.4e-06 PPR repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclI AACGTT 1 cut(s) 51
AfiI CCNNNNNNNGG 1 cut(s) 215
AgsI TTSAA 1 cut(s) 128
AluBI AGCT 1 cut(s) 110
AluI AGCT 1 cut(s) 110
Alw26I GTCTC 1 cut(s) 158
AoxI GGCC 1 cut(s) 13
AspS9I GGNCC 2 cut(s) 13, 256
AvaII GGWCC 1 cut(s) 256
BccI CCATC 1 cut(s) 266
BcoDI GTCTC 1 cut(s) 158
Bme18I GGWCC 1 cut(s) 256
BmgT120I GGNCC 2 cut(s) 13, 256
BmiI GGNNCC 1 cut(s) 257
Bsc4I CCNNNNNNNGG 1 cut(s) 215
Bse118I RCCGGY 1 cut(s) 15
BseGI GGATG 1 cut(s) 12
BseLI CCNNNNNNNGG 1 cut(s) 215
BseMII CTCAG 3 cut(s) 33, 248, 319
BshFI GGCC 1 cut(s) 15
BsiSI CCGG 1 cut(s) 16
BslFI GGGAC 1 cut(s) 269
BslI CCNNNNNNNGG 1 cut(s) 215
BsmAI GTCTC 1 cut(s) 158
BsmBI CGTCTC 1 cut(s) 158
BsmFI GGGAC 1 cut(s) 269
BsnI GGCC 1 cut(s) 15
BspANI GGCC 1 cut(s) 15
BspCNI CTCAG 3 cut(s) 34, 247, 318
BspLI GGNNCC 1 cut(s) 257
BsrFI RCCGGY 1 cut(s) 15
BssAI RCCGGY 1 cut(s) 15
BstC8I GCNNGC 1 cut(s) 278
BstDEI CTNAG 3 cut(s) 42, 234, 305
BstF5I GGATG 1 cut(s) 12
BstMAI GTCTC 1 cut(s) 158
BstNSI RCATGY 2 cut(s) 233, 304
BsuRI GGCC 1 cut(s) 15
BtsCI GGATG 1 cut(s) 12
Cac8I GCNNGC 1 cut(s) 278
Cfr10I RCCGGY 1 cut(s) 15
Cfr13I GGNCC 2 cut(s) 13, 256
CviAII CATG 4 cut(s) 70, 230, 260, 301
CviJI RGCY 4 cut(s) 15, 81, 110, 291
CviKI_1 RGCY 4 cut(s) 15, 81, 110, 291
DdeI CTNAG 3 cut(s) 42, 234, 305
Eco47I GGWCC 1 cut(s) 256
Esp3I CGTCTC 1 cut(s) 158
FaeI CATG 4 cut(s) 73, 233, 263, 304
FaqI GGGAC 1 cut(s) 269
FatI CATG 4 cut(s) 69, 229, 259, 300
FokI GGATG 1 cut(s) 19
HaeIII GGCC 1 cut(s) 15
HapII CCGG 1 cut(s) 16
Hin1II CATG 4 cut(s) 73, 233, 263, 304
HincII GTYRAC 1 cut(s) 247
HindII GTYRAC 1 cut(s) 247
HpaII CCGG 1 cut(s) 16
Hpy166II GTNNAC 1 cut(s) 247
Hpy188I TCNGA 1 cut(s) 33
Hpy8I GTNNAC 1 cut(s) 247
HpyAV CCTTC 1 cut(s) 4
HpyCH4IV ACGT 2 cut(s) 51, 167
HpyF3I CTNAG 3 cut(s) 42, 234, 305
HpySE526I ACGT 2 cut(s) 51, 167
Hsp92II CATG 4 cut(s) 73, 233, 263, 304
LpnPI CCDG 3 cut(s) 29, 54, 180
MaeII ACGT 2 cut(s) 51, 167
MfeI CAATTG 1 cut(s) 250
MluCI AATT 1 cut(s) 250
MnlI CCTC 2 cut(s) 39, 219
MspI CCGG 1 cut(s) 16
MunI CAATTG 1 cut(s) 250
NlaIII CATG 4 cut(s) 73, 233, 263, 304
NlaIV GGNNCC 1 cut(s) 257
NspI RCATGY 2 cut(s) 233, 304
Psp1406I AACGTT 1 cut(s) 51
PspN4I GGNNCC 1 cut(s) 257
PspPI GGNCC 2 cut(s) 13, 256
Sau96I GGNCC 2 cut(s) 13, 256
SetI ASST 3 cut(s) 54, 112, 170
SinI GGWCC 1 cut(s) 256
Sse9I AATT 1 cut(s) 250
TaiI ACGT 2 cut(s) 54, 170
TasI AATT 1 cut(s) 250
TspDTI ATGAA 4 cut(s) 23, 159, 160, 300
TspGWI ACGGA 1 cut(s) 108
VpaK11BI GGWCC 1 cut(s) 256
XceI RCATGY 2 cut(s) 233, 304
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.