Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0018176

Physical Location & Seq

Genomic Coordinates Reverse (-)

29287564 .. 29288925

Gene Structure 1362 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000008346

Sequence Viewer

CDS Protein Promoter (2k)

Length: 717 bp

ATGCCTAGCAGAGATGTTCATGATAGCATTGTTCGTTGGACTTGTTTGGTTACTAAGTACTCGAGAGGCGGTTGGGTCGATGAGGCTCGGGTGCTGTTTGATATCATGCCGGAGAGAAATGTGGTAACTTATAATGCTATGTTGTTCGGGCTTGGGACACTTGATAACTGTGGTGGGAAATGGAGTGCTCTTGTGGATTGTTTAACTTTGAAGACGAAGCGGTCAGCTGAAGTGCAGGGCCAGTATGCTTTGTTTCGGAAAATGCCTGAGAGGAACGTTGTTTCTTGGACAGCCATGATTGGTGGCTTTGCTTGGAATGGATTTTATAGAGAAGCTCTATTGTTATTCCTTGAATGGAATGGGAACTATGAAACAAGACCAAATGGAGAGACGTTCATATCGCTAGTATATGCTTGTGCTGGTATTTGGTTGCCTCATCTTGGAAAGCAACTACATGCTCAGTTGATTGTCAACAATTGGGACCATGTTGATTATGATGGCAGGCTATCAAAGAGCCTTACTCACATGCTCAGTTCATTTGTAATTGCTAGATGGAACTTTATTAGCATGTGGAATGTTAAATCAGTGTATCTCACACCGTGTTGTATTAATCGGTGGACTTGTCGATGTGTAAAAACTAACTACAAGTATGCAGATTGTGGTGGCTTACTAATCTATGAAATTATGGATGTTATTAGTGCTCTTCTCAATCTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR

Protein Analysis

239

Amino Acids

27.35

Weight (kDa)

8.54

Isoelectric Point (pI)

36.04

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0018176)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr4g0411551 RchiOBHm_Chr7g0229601
rosa_laevigata	RLG00000008199 RLG00000008346
rosa_multiflora	Rmu_sc0003660.1_g000002 Rmu_sc0007538.1_g000014 Rmu_ssc0000281.1_g000012
rosa_rugosa	Rorug07G0192000
rosa_samantha	Rh4BG165600 Rh5AG246500 Rh5CG244600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	132
AasI	GACNNNNNNGTC	1 cut(s)	220
AciI	CCGC	2 cut(s)	69, 220
AclI	AACGTT	1 cut(s)	276
AcuI	CTGAAG	1 cut(s)	249
AdeI	CACNNNGTG	1 cut(s)	600
AfaI	GTAC	1 cut(s)	59
AfiI	CCNNNNNNNGG	1 cut(s)	440
AgsI	TTSAA	2 cut(s)	211, 353
AluBI	AGCT	2 cut(s)	227, 335
AluI	AGCT	2 cut(s)	227, 335
Alw21I	GWGCWC	2 cut(s)	190, 703
Alw26I	GTCTC	1 cut(s)	383
Ama87I	CYCGRG	2 cut(s)	61, 87
AoxI	GGCC	1 cut(s)	238
AseI	ATTAAT	1 cut(s)	609
AspS9I	GGNCC	2 cut(s)	238, 481
AvaI	CYCGRG	2 cut(s)	61, 87
AvaII	GGWCC	1 cut(s)	481
BbsI	GAAGAC	1 cut(s)	218
Bbv12I	GWGCWC	2 cut(s)	190, 703
BccI	CCATC	2 cut(s)	491, 546
BcoDI	GTCTC	1 cut(s)	383
BfaI	CTAG	3 cut(s)	6, 404, 549
BmcAI	AGTACT	1 cut(s)	59
Bme18I	GGWCC	1 cut(s)	481
BmeT110I	CYCGRG	2 cut(s)	61, 87
BmgT120I	GGNCC	2 cut(s)	238, 481
BmiI	GGNNCC	1 cut(s)	482
BpiI	GAAGAC	1 cut(s)	218
BplI	GAGNNNNNCTC	2 cut(s)	505, 537
Bsc4I	CCNNNNNNNGG	1 cut(s)	440
Bse1I	ACTGG	1 cut(s)	241
BseGI	GGATG	1 cut(s)	694
BseLI	CCNNNNNNNGG	1 cut(s)	440
BseMII	CTCAG	3 cut(s)	258, 473, 544
BseNI	ACTGG	1 cut(s)	241
BsgI	GTGCAG	1 cut(s)	254
BshFI	GGCC	1 cut(s)	240
BsiHKAI	GWGCWC	2 cut(s)	190, 703
BsiHKCI	CYCGRG	2 cut(s)	61, 87
BsiSI	CCGG	1 cut(s)	110
BslFI	GGGAC	2 cut(s)	169, 494
BslI	CCNNNNNNNGG	1 cut(s)	440
BsmAI	GTCTC	1 cut(s)	383
BsmBI	CGTCTC	1 cut(s)	383
BsmFI	GGGAC	2 cut(s)	169, 494
BsnI	GGCC	1 cut(s)	240
BsoBI	CYCGRG	2 cut(s)	61, 87
Bsp1286I	GDGCHC	2 cut(s)	190, 703
BspACI	CCGC	2 cut(s)	69, 220
BspANI	GGCC	1 cut(s)	240
BspCNI	CTCAG	3 cut(s)	259, 472, 543
BspHI	TCATGA	1 cut(s)	19
BspLI	GGNNCC	1 cut(s)	482
BspQI	GCTCTTC	1 cut(s)	708
BsrI	ACTGG	1 cut(s)	241
Bst4CI	ACNGT	2 cut(s)	170, 600
Bst6I	CTCTTC	1 cut(s)	708
BstC8I	GCNNGC	1 cut(s)	503
BstDEI	CTNAG	4 cut(s)	54, 267, 459, 530
BstF5I	GGATG	1 cut(s)	694
BstMAI	GTCTC	1 cut(s)	383
BstNSI	RCATGY	3 cut(s)	458, 529, 571
BstV2I	GAAGAC	1 cut(s)	218
BsuRI	GGCC	1 cut(s)	240
BtsCI	GGATG	1 cut(s)	694
BtsIMutI	CAGTG	1 cut(s)	591
Cac8I	GCNNGC	1 cut(s)	503
CciI	TCATGA	1 cut(s)	19
Cfr13I	GGNCC	2 cut(s)	238, 481
Csp6I	GTAC	1 cut(s)	58
CviAII	CATG	7 cut(s)	20, 106, 295, 455, 485, 526, 568
CviQI	GTAC	1 cut(s)	58
DdeI	CTNAG	4 cut(s)	54, 267, 459, 530
DraIII	CACNNNGTG	1 cut(s)	600
DrdI	GACNNNNNNGTC	1 cut(s)	220
DseDI	GACNNNNNNGTC	1 cut(s)	220
Eam1104I	CTCTTC	1 cut(s)	708
EarI	CTCTTC	1 cut(s)	708
Eco32I	GATATC	1 cut(s)	103
Eco47I	GGWCC	1 cut(s)	481
Eco57I	CTGAAG	1 cut(s)	249
Eco88I	CYCGRG	2 cut(s)	61, 87
EcoRV	GATATC	1 cut(s)	103
Esp3I	CGTCTC	1 cut(s)	383
FaeI	CATG	7 cut(s)	23, 109, 298, 458, 488, 529, 571
FaqI	GGGAC	2 cut(s)	169, 494
FatI	CATG	7 cut(s)	19, 105, 294, 454, 484, 525, 567
FokI	GGATG	1 cut(s)	701
FspBI	CTAG	3 cut(s)	6, 404, 549
HaeIII	GGCC	1 cut(s)	240
HapII	CCGG	1 cut(s)	110
Hin1II	CATG	7 cut(s)	23, 109, 298, 458, 488, 529, 571
HincII	GTYRAC	1 cut(s)	472
HindII	GTYRAC	1 cut(s)	472
HpaII	CCGG	1 cut(s)	110
Hpy166II	GTNNAC	2 cut(s)	472, 618
Hpy188I	TCNGA	1 cut(s)	258
Hpy188III	TCNNGA	2 cut(s)	20, 63
Hpy8I	GTNNAC	2 cut(s)	472, 618
HpyCH4III	ACNGT	2 cut(s)	170, 600
HpyCH4IV	ACGT	2 cut(s)	276, 392
HpyCH4V	TGCA	2 cut(s)	235, 653
HpyF3I	CTNAG	4 cut(s)	54, 267, 459, 530
HpySE526I	ACGT	2 cut(s)	276, 392
Hsp92II	CATG	7 cut(s)	23, 109, 298, 458, 488, 529, 571
LguI	GCTCTTC	1 cut(s)	708
LpnPI	CCDG	6 cut(s)	123, 221, 254, 279, 405, 487
MaeI	CTAG	3 cut(s)	6, 404, 549
MaeII	ACGT	2 cut(s)	276, 392
MaeIII	GTNAC	2 cut(s)	49, 124
MboII	GAAGA	2 cut(s)	223, 695
MfeI	CAATTG	1 cut(s)	475
MhlI	GDGCHC	2 cut(s)	190, 703
MluCI	AATT	3 cut(s)	475, 543, 681
MmeI	TCCRAC	1 cut(s)	17
MnlI	CCTC	4 cut(s)	59, 76, 264, 444
MseI	TTAA	3 cut(s)	203, 579, 609
MspA1I	CMGCKG	1 cut(s)	227
MspI	CCGG	1 cut(s)	110
MunI	CAATTG	1 cut(s)	475
NlaIII	CATG	7 cut(s)	23, 109, 298, 458, 488, 529, 571
NlaIV	GGNNCC	1 cut(s)	482
NspI	RCATGY	3 cut(s)	458, 529, 571
PaeR7I	CTCGAG	1 cut(s)	61
PagI	TCATGA	1 cut(s)	19
PciSI	GCTCTTC	1 cut(s)	708
PshBI	ATTAAT	1 cut(s)	609
PsiI	TTATAA	1 cut(s)	132
Psp1406I	AACGTT	1 cut(s)	276
PspN4I	GGNNCC	1 cut(s)	482
PspPI	GGNCC	2 cut(s)	238, 481
PvuII	CAGCTG	1 cut(s)	227
RsaI	GTAC	1 cut(s)	59
RsaNI	GTAC	1 cut(s)	58
SapI	GCTCTTC	1 cut(s)	708
SaqAI	TTAA	3 cut(s)	203, 579, 609
Sau96I	GGNCC	2 cut(s)	238, 481
ScaI	AGTACT	1 cut(s)	59
SduI	GDGCHC	2 cut(s)	190, 703
SetI	ASST	4 cut(s)	229, 279, 337, 395
Sfr274I	CTCGAG	1 cut(s)	61
SinI	GGWCC	1 cut(s)	481
SlaI	CTCGAG	1 cut(s)	61
SmlI	CTYRAG	1 cut(s)	61
SmoI	CTYRAG	1 cut(s)	61
Sse9I	AATT	3 cut(s)	475, 543, 681
SsiI	CCGC	2 cut(s)	69, 220
SspMI	CTAG	3 cut(s)	6, 404, 549
TaaI	ACNGT	2 cut(s)	170, 600
TaiI	ACGT	2 cut(s)	279, 395
TaqI	TCGA	3 cut(s)	62, 78, 625
TasI	AATT	3 cut(s)	475, 543, 681
TatI	WGTACW	1 cut(s)	57
Tru1I	TTAA	3 cut(s)	203, 579, 609
Tru9I	TTAA	3 cut(s)	203, 579, 609
TscAI	CASTG	1 cut(s)	591
TspDTI	ATGAA	5 cut(s)	8, 384, 385, 525, 693
TspRI	CASTG	1 cut(s)	591
VpaK11BI	GGWCC	1 cut(s)	481
VspI	ATTAAT	1 cut(s)	609
XceI	RCATGY	3 cut(s)	458, 529, 571
XhoI	CTCGAG	1 cut(s)	61
XspI	CTAG	3 cut(s)	6, 404, 549
ZrmI	AGTACT	1 cut(s)	59

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.