Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0018176

Physical Location & Seq

Genomic Coordinates Forward (+)

53146744 .. 53147684

Gene Structure 941 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ20568

Sequence Viewer

CDS Protein Promoter (2k)

Length: 750 bp

ATGACTAGGTTTTCTGAGCTGCTTTACTATCTCTCACAACGTATGTTTAAAGATGCACGCCACCTGCTTGAGAAAATGCCTAACAGAGATGTTCATGATAGCATTGTTCGTTGGACTTGTTTGGTTACTAAGTACTCGAGATGCGGTTGGGTCGATGAGGCTCGGGTGTTGTTTGATATCATGCCAGAGAGAAATATGGTAACTTATAATGCTATGTTGTCCGGGTATGTGCAGTCAGGGAGGAATGTGGAGTCGTGGACTTCGATGCTGTGTGGGTTAGCTTGTGAGGGGAGGATTGAGGAGGCGAGGCGGTTGTTTGAGGAAATGCCAGAGAGGAATGTTGTTTCTTGGAATTCTATGATTGCTGGGTTGGTTAAGAATGGAGACTTGGAGGGAGCACGGGAGGTTTTTGACTGGATGCGGATGAAGAATGTTGTTTCTTGTAATGCTATGATTGGTGGGAAAATGCGTAAGAGGAACGTTGTTTCTTGGACAGCCATGATTGGTGGCTTTGCTTGGAATGGATTTTATAGAGAAGCTCTATTGTTATTCCTTGAATGGAATGGGAACTATGAAACAAGACCAAATGGAGAGACGTTCATATCGCTTGTATATGCTTGTGCTGGTATTTGGTTTCCTCATCTTAGAAAGCAACTACATGCTCAGTTAATTGTCAACAATTGGGACCATGTTGATTATGATGGCAGACTATCAAAGAGCCTCATTCACATGCTCAGCTCATTTTTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR

Protein Analysis

249

Amino Acids

29.08

Weight (kDa)

8.51

Isoelectric Point (pI)

44.33

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	82 - 114	6.5e-06	PPR repeat family
PPR	PF01535	85 - 114	8.9e-08	PPR repeat
PPR_2	PF13041	112 - 145	1.1e-08	PPR repeat family
PPR	PF01535	115 - 144	6.6e-07	PPR repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0018176)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr4g0411551 RchiOBHm_Chr7g0229601
rosa_laevigata	RLG00000008199 RLG00000008346
rosa_multiflora	Rmu_sc0003660.1_g000002 Rmu_sc0007538.1_g000014 Rmu_ssc0000281.1_g000012
rosa_rugosa	Rorug07G0192000
rosa_samantha	Rh4BG165600 Rh5AG246500 Rh5CG244600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	207
AarI	CACCTGC	1 cut(s)	72
Acc36I	ACCTGC	1 cut(s)	72
AciI	CCGC	3 cut(s)	144, 310, 421
AclI	AACGTT	1 cut(s)	480
AcsI	RAATTY	1 cut(s)	352
AfaI	GTAC	1 cut(s)	134
AgsI	TTSAA	1 cut(s)	557
AjuI	GAANNNNNNNTTGG	2 cut(s)	371, 403
AluBI	AGCT	4 cut(s)	19, 281, 539, 738
AluI	AGCT	4 cut(s)	19, 281, 539, 738
Alw21I	GWGCWC	1 cut(s)	400
Alw26I	GTCTC	2 cut(s)	378, 587
Ama87I	CYCGRG	2 cut(s)	136, 162
ApeKI	GCWGC	1 cut(s)	19
ApoI	RAATTY	1 cut(s)	352
AspS9I	GGNCC	1 cut(s)	685
AsuC2I	CCSGG	1 cut(s)	223
AvaI	CYCGRG	2 cut(s)	136, 162
AvaII	GGWCC	1 cut(s)	685
Bbv12I	GWGCWC	1 cut(s)	400
BbvI	GCAGC	1 cut(s)	6
BccI	CCATC	1 cut(s)	695
BcnI	CCSGG	1 cut(s)	223
BcoDI	GTCTC	2 cut(s)	378, 587
BfaI	CTAG	1 cut(s)	6
BfuAI	ACCTGC	1 cut(s)	72
BisI	GCNGC	1 cut(s)	20
BlpI	GCTNAGC	1 cut(s)	734
BlsI	GCNGC	1 cut(s)	21
BmcAI	AGTACT	1 cut(s)	134
Bme1390I	CCNGG	1 cut(s)	223
Bme18I	GGWCC	1 cut(s)	685
BmeT110I	CYCGRG	2 cut(s)	136, 162
BmgT120I	GGNCC	1 cut(s)	685
BmiI	GGNNCC	1 cut(s)	686
BmrFI	CCNGG	1 cut(s)	223
BmsI	GCATC	4 cut(s)	43, 131, 255, 408
Bpu1102I	GCTNAGC	1 cut(s)	734
BpuEI	CTTGAG	1 cut(s)	89
BpuMI	CCSGG	1 cut(s)	223
Bse1I	ACTGG	1 cut(s)	419
BseGI	GGATG	2 cut(s)	423, 429
BseMII	CTCAG	3 cut(s)	6, 677, 748
BseNI	ACTGG	1 cut(s)	419
BseRI	GAGGAG	1 cut(s)	314
BseXI	GCAGC	1 cut(s)	6
BseYI	CCCAGC	1 cut(s)	365
BsgI	GTGCAG	1 cut(s)	251
BsiHKAI	GWGCWC	1 cut(s)	400
BsiHKCI	CYCGRG	2 cut(s)	136, 162
BsiSI	CCGG	1 cut(s)	222
BslFI	GGGAC	1 cut(s)	698
BsmAI	GTCTC	2 cut(s)	378, 587
BsmBI	CGTCTC	1 cut(s)	587
BsmFI	GGGAC	1 cut(s)	698
BsoBI	CYCGRG	2 cut(s)	136, 162
Bsp1286I	GDGCHC	1 cut(s)	400
Bsp1720I	GCTNAGC	1 cut(s)	734
BspACI	CCGC	3 cut(s)	144, 310, 421
BspCNI	CTCAG	3 cut(s)	7, 676, 747
BspHI	TCATGA	1 cut(s)	94
BspLI	GGNNCC	1 cut(s)	686
BspMI	ACCTGC	1 cut(s)	72
BsrI	ACTGG	1 cut(s)	419
BstC8I	GCNNGC	1 cut(s)	58
BstDEI	CTNAG	5 cut(s)	15, 129, 644, 663, 734
BstF5I	GGATG	2 cut(s)	423, 429
BstMAI	GTCTC	2 cut(s)	378, 587
BstNSI	RCATGY	2 cut(s)	662, 733
BstSCI	CCNGG	1 cut(s)	221
BstV1I	GCAGC	1 cut(s)	6
BtsCI	GGATG	2 cut(s)	423, 429
BveI	ACCTGC	1 cut(s)	72
Cac8I	GCNNGC	1 cut(s)	58
CciI	TCATGA	1 cut(s)	94
Cfr13I	GGNCC	1 cut(s)	685
Csp6I	GTAC	1 cut(s)	133
CviAII	CATG	6 cut(s)	95, 181, 499, 659, 689, 730
CviJI	RGCY	8 cut(s)	19, 161, 281, 497, 510, 539, 720, 738
CviKI_1	RGCY	8 cut(s)	19, 161, 281, 497, 510, 539, 720, 738
CviQI	GTAC	1 cut(s)	133
DdeI	CTNAG	5 cut(s)	15, 129, 644, 663, 734
DraI	TTTAAA	1 cut(s)	49
Eco32I	GATATC	1 cut(s)	178
Eco47I	GGWCC	1 cut(s)	685
Eco88I	CYCGRG	2 cut(s)	136, 162
EcoRI	GAATTC	1 cut(s)	352
EcoRV	GATATC	1 cut(s)	178
Esp3I	CGTCTC	1 cut(s)	587
FaeI	CATG	6 cut(s)	98, 184, 502, 662, 692, 733
FaqI	GGGAC	1 cut(s)	698
FatI	CATG	6 cut(s)	94, 180, 498, 658, 688, 729
Fnu4HI	GCNGC	1 cut(s)	20
FokI	GGATG	2 cut(s)	430, 436
Fsp4HI	GCNGC	1 cut(s)	20
FspBI	CTAG	1 cut(s)	6
GluI	GCNGC	1 cut(s)	20
GsaI	CCCAGC	1 cut(s)	369
HapII	CCGG	1 cut(s)	222
Hin1II	CATG	6 cut(s)	98, 184, 502, 662, 692, 733
HincII	GTYRAC	1 cut(s)	676
HindII	GTYRAC	1 cut(s)	676
HinfI	GANTC	1 cut(s)	251
HpaII	CCGG	1 cut(s)	222
Hpy166II	GTNNAC	2 cut(s)	258, 676
Hpy188I	TCNGA	1 cut(s)	16
Hpy188III	TCNNGA	2 cut(s)	95, 138
Hpy8I	GTNNAC	2 cut(s)	258, 676
HpyCH4IV	ACGT	3 cut(s)	40, 480, 596
HpyCH4V	TGCA	2 cut(s)	56, 232
HpyF3I	CTNAG	5 cut(s)	15, 129, 644, 663, 734
HpySE526I	ACGT	3 cut(s)	40, 480, 596
Hsp92II	CATG	6 cut(s)	98, 184, 502, 662, 692, 733
LmnI	GCTCC	1 cut(s)	395
LpnPI	CCDG	8 cut(s)	77, 198, 222, 235, 342, 351, 400, 609
Lsp1109I	GCAGC	1 cut(s)	6
LweI	GCATC	4 cut(s)	43, 131, 255, 408
MaeI	CTAG	1 cut(s)	6
MaeII	ACGT	3 cut(s)	40, 480, 596
MaeIII	GTNAC	2 cut(s)	124, 199
MboII	GAAGA	1 cut(s)	439
MfeI	CAATTG	1 cut(s)	679
MhlI	GDGCHC	1 cut(s)	400
MluCI	AATT	3 cut(s)	352, 669, 679
MlyI	GAGTC	1 cut(s)	260
MmeI	TCCRAC	1 cut(s)	92
MseI	TTAA	3 cut(s)	48, 375, 668
MslI	CAYNNNNRTG	1 cut(s)	728
MspI	CCGG	1 cut(s)	222
MspR9I	CCNGG	1 cut(s)	223
MunI	CAATTG	1 cut(s)	679
NciI	CCSGG	1 cut(s)	223
NlaIII	CATG	6 cut(s)	98, 184, 502, 662, 692, 733
NlaIV	GGNNCC	1 cut(s)	686
NspI	RCATGY	2 cut(s)	662, 733
PaeR7I	CTCGAG	1 cut(s)	136
PagI	TCATGA	1 cut(s)	94
PaqCI	CACCTGC	1 cut(s)	72
PcsI	WCGNNNNNNNCGW	1 cut(s)	260
PkrI	GCNGC	1 cut(s)	21
PleI	GAGTC	1 cut(s)	259
PpsI	GAGTC	1 cut(s)	259
PsiI	TTATAA	1 cut(s)	207
Psp1406I	AACGTT	1 cut(s)	480
PspFI	CCCAGC	1 cut(s)	365
PspN4I	GGNNCC	1 cut(s)	686
PspPI	GGNCC	1 cut(s)	685
RsaI	GTAC	1 cut(s)	134
RsaNI	GTAC	1 cut(s)	133
RseI	CAYNNNNRTG	1 cut(s)	728
SaqAI	TTAA	3 cut(s)	48, 375, 668
SatI	GCNGC	1 cut(s)	20
Sau96I	GGNCC	1 cut(s)	685
ScaI	AGTACT	1 cut(s)	134
SchI	GAGTC	1 cut(s)	260
ScrFI	CCNGG	1 cut(s)	223
SduI	GDGCHC	1 cut(s)	400
SfaNI	GCATC	4 cut(s)	43, 131, 255, 408
Sfr274I	CTCGAG	1 cut(s)	136
SinI	GGWCC	1 cut(s)	685
SlaI	CTCGAG	1 cut(s)	136
SmiMI	CAYNNNNRTG	1 cut(s)	728
SmlI	CTYRAG	2 cut(s)	68, 136
SmoI	CTYRAG	2 cut(s)	68, 136
Sse9I	AATT	3 cut(s)	352, 669, 679
SsiI	CCGC	3 cut(s)	144, 310, 421
SspMI	CTAG	1 cut(s)	6
StyD4I	CCNGG	1 cut(s)	221
TaiI	ACGT	3 cut(s)	43, 483, 599
TaqI	TCGA	3 cut(s)	137, 153, 263
TasI	AATT	3 cut(s)	352, 669, 679
TatI	WGTACW	1 cut(s)	132
Tru1I	TTAA	3 cut(s)	48, 375, 668
Tru9I	TTAA	3 cut(s)	48, 375, 668
TseI	GCWGC	1 cut(s)	19
TspDTI	ATGAA	4 cut(s)	83, 440, 588, 589
VpaK11BI	GGWCC	1 cut(s)	685
XapI	RAATTY	1 cut(s)	352
XceI	RCATGY	2 cut(s)	662, 733
XhoI	CTCGAG	1 cut(s)	136
XspI	CTAG	1 cut(s)	6
ZrmI	AGTACT	1 cut(s)	134

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.