Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0016104

Physical Location & Seq

Genomic Coordinates Forward (+)

40046617 .. 40047971

Gene Structure 1355 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ38561

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1077 bp

ATGTCCACCACTGGCACCACCACCATGCAGCTGAACCACCTCTGCTTCATTTTGCCACCAGACTGCGACGAAGTCGAGCCACCAGACCACGAAAACCAGCAAAAACCCACCAAGGAGGTGTTAGAGGTCAGAAAGAATCACACCCGTCGCGAATGCCTGAGTCATGTTCGTGCTTTCGTCAAAGAGTCACTCTGCAGGCTCTACGACCTGAAATGGATCAGTCTCTGTCACCATGGCACGAGAAAAAACCGAGACCAGCACCATTCTGGGGTGTTTCAGGACATGGATGGGATACAACTCAAGGACAAGGTCGGAGGAGACAACCCGAGGATCTTCAGCTTCTCGGAGCTTTATATTGGTTCGAATGGTTTCAGTGAGGATCAAGTTTTAGGGAGTGGAGGTTTTGGGAAAGTGTACAGAGCGGTTCTGCCTAGTGACGGAACTGTTGTTGCTGTGAAGTCCTTGGTGGAGAGAGGAGAGCGGTTCGAGAAGACTTTTGTGGCGGAGTTGGTTGCGGTGGCTCACCTTCGTCACCGGAATCTTGTCCGGTTAAGGGGGTGGTGTGTTCATGAAAAAGAGCTGTTTTTGGTTTATGACTACATGCCGAACCTCAGCCTTGACCGCATACTTTTCAGGAAACCTGAGAATATAGGGTCTCCGACATCAGTGCCTCTCAATTGGGAGCGTAGAAGGAACATAATCGGTGGCTTGGCAGCGGCGCTTTACTATCTTCACGAACAGTTGGAAACTCAAATCATTCACCGGGATGTCAAGACGAGTAATGTGATGCTTGATTCCCATTTCAATGCTCGGCTAGGTGACTTTGGCTTGGCACGGTGGCTGGAACATGAAATTGAGTACGAGATAAAGACACCATCGATGCAAAACCACCAGTTTCGGGTAGCAGAAACGACCAAAATTGGTGGAACAATAGGGTATTTGCCACCTGAAAGCTTCCAGAAACGAAGCGTGGCTACTGCAAAATCCGACGTTTTCAGCTTTGGGATTGTTGTTCTGGAGGTGGTATCATATTGCTCGACTGGATCCGGAAGCTGTCTGACGAAGGGAAGCTTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0005575 GO:0005623 GO:0005886 GO:0006950 GO:0008150 GO:0009605 GO:0009607 GO:0009611 GO:0009617 GO:0009719 GO:0009725 GO:0009751 GO:0009753 GO:0009987 GO:0010033 GO:0014070 GO:0016020 GO:0032870 GO:0035690 GO:0042221 GO:0042493 GO:0043207 GO:0044464 GO:0046677 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0070887 GO:0071229 GO:0071236 GO:0071310 GO:0071395 GO:0071407 GO:0071446 GO:0071495 GO:0071944 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

358

Amino Acids

40.65

Weight (kDa)

7.68

Isoelectric Point (pI)

40.09

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	125 - 343	3.1e-39	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	127 - 347	1.4e-36	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016104)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G32800
fragaria_vesca	FvH4_4g14630 FvH4_4g15750 FvH4_5g04690
malus_domestica	MD04G1008600.v1.1
prunus_persica	Prupe.1G007200_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0415351
rosa_laevigata	RLG00000008076
rosa_multiflora	Rmu_sc0013726.1_g000001 Rmu_sc0028326.1_g000002
rosa_roxburghii	Rroxscaffold_5G00359130
rosa_rugosa	Rorug04G0133800
rosa_samantha	Rh4BG192800 Rh4DG191900
rosa_wichuraiana	Rw4G016520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	14
AccBSI	CCGCTC	2 cut(s)	422, 481
AccII	CGCG	1 cut(s)	150
AccIII	TCCGGA	1 cut(s)	1046
AciI	CCGC	6 cut(s)	422, 481, 503, 515, 622, 716
AclWI	GGATC	5 cut(s)	224, 338, 387, 1038, 1051
AcuI	CTGAAG	1 cut(s)	319
AfaI	GTAC	2 cut(s)	416, 860
AfiI	CCNNNNNNNGG	4 cut(s)	268, 437, 553, 898
AgsI	TTSAA	1 cut(s)	805
AluBI	AGCT	8 cut(s)	31, 339, 349, 580, 954, 999, 1053, 1071
AluI	AGCT	8 cut(s)	31, 339, 349, 580, 954, 999, 1053, 1071
Alw26I	GTCTC	4 cut(s)	227, 246, 312, 660
AlwI	GGATC	5 cut(s)	224, 338, 387, 1038, 1051
AlwNI	CAGNNNCTG	1 cut(s)	225
Ama87I	CYCGRG	1 cut(s)	325
Aor13HI	TCCGGA	1 cut(s)	1046
ApeKI	GCWGC	2 cut(s)	28, 713
Asp700I	GAANNNNTTC	1 cut(s)	368
AspLEI	GCGC	1 cut(s)	721
AsuC2I	CCSGG	1 cut(s)	764
AsuHPI	GGTGA	5 cut(s)	221, 515, 524, 752, 830
AsuII	TTCGAA	1 cut(s)	362
AvaI	CYCGRG	1 cut(s)	325
BamHI	GGATCC	1 cut(s)	1043
BanI	GGYRCC	1 cut(s)	14
BarI	GAAGNNNNNNTAC	2 cut(s)	958, 990
BauI	CACGAG	1 cut(s)	238
BbsI	GAAGAC	1 cut(s)	497
BbvCI	CCTCAGC	1 cut(s)	611
BbvI	GCAGC	2 cut(s)	40, 725
BccI	CCATC	2 cut(s)	281, 883
BcgI	CGANNNNNNTGC	2 cut(s)	649, 683
BciVI	GTATCC	1 cut(s)	285
BcnI	CCSGG	1 cut(s)	764
BcoDI	GTCTC	4 cut(s)	227, 246, 312, 660
BfaI	CTAG	2 cut(s)	432, 815
BfmI	CTRYAG	1 cut(s)	193
BfoI	RGCGCY	1 cut(s)	722
BfuI	GTATCC	1 cut(s)	285
BisI	GCNGC	3 cut(s)	29, 714, 717
BlsI	GCNGC	3 cut(s)	30, 715, 718
Bme1390I	CCNGG	1 cut(s)	764
BmeT110I	CYCGRG	1 cut(s)	325
BmiI	GGNNCC	2 cut(s)	16, 1045
BmrFI	CCNGG	1 cut(s)	764
BmsI	GCATC	2 cut(s)	777, 870
BpiI	GAAGAC	1 cut(s)	497
BpmI	CTGGAG	1 cut(s)	1037
Bpu10I	CCTNAGC	1 cut(s)	611
Bpu14I	TTCGAA	1 cut(s)	362
BpuEI	CTTGAG	1 cut(s)	284
BpuMI	CCSGG	1 cut(s)	764
Bsa29I	ATCGAT	1 cut(s)	878
BsaI	GGTCTC	2 cut(s)	246, 660
BsaJI	CCNNGG	4 cut(s)	111, 232, 326, 462
BsaWI	WCCGGW	3 cut(s)	534, 546, 1046
BsaXI	ACNNNNNCTCC	2 cut(s)	385, 415
Bsc4I	CCNNNNNNNGG	4 cut(s)	268, 437, 553, 898
Bse1I	ACTGG	3 cut(s)	16, 892, 1045
BseAI	TCCGGA	1 cut(s)	1046
BseCI	ATCGAT	1 cut(s)	878
BseDI	CCNNGG	4 cut(s)	111, 232, 326, 462
BseGI	GGATG	2 cut(s)	292, 772
BseLI	CCNNNNNNNGG	4 cut(s)	268, 437, 553, 898
BseMII	CTCAG	3 cut(s)	149, 625, 633
BseNI	ACTGG	3 cut(s)	16, 892, 1045
BseRI	GAGGAG	2 cut(s)	330, 489
BseXI	GCAGC	2 cut(s)	40, 725
Bsh1236I	CGCG	1 cut(s)	150
BshNI	GGYRCC	1 cut(s)	14
BshVI	ATCGAT	1 cut(s)	878
BsiHKCI	CYCGRG	1 cut(s)	325
BsiSI	CCGG	4 cut(s)	535, 547, 763, 1047
BslI	CCNNNNNNNGG	4 cut(s)	268, 437, 553, 898
BsmAI	GTCTC	4 cut(s)	227, 246, 312, 660
BsmI	GAATGC	1 cut(s)	158
Bso31I	GGTCTC	2 cut(s)	246, 660
BsoBI	CYCGRG	1 cut(s)	325
Bsp119I	TTCGAA	1 cut(s)	362
Bsp13I	TCCGGA	1 cut(s)	1046
Bsp1407I	TGTACA	1 cut(s)	414
Bsp143I	GATC	4 cut(s)	216, 330, 379, 1043
Bsp19I	CCATGG	1 cut(s)	232
Bsp68I	TCGCGA	1 cut(s)	150
BspACI	CCGC	6 cut(s)	422, 481, 503, 515, 622, 716
BspCNI	CTCAG	3 cut(s)	150, 624, 634
BspDI	ATCGAT	1 cut(s)	878
BspEI	TCCGGA	1 cut(s)	1046
BspFNI	CGCG	1 cut(s)	150
BspHI	TCATGA	1 cut(s)	568
BspLI	GGNNCC	2 cut(s)	16, 1045
BspMAI	CTGCAG	1 cut(s)	197
BspPI	GGATC	5 cut(s)	224, 338, 387, 1038, 1051
BspT104I	TTCGAA	1 cut(s)	362
BspT107I	GGYRCC	1 cut(s)	14
BspTNI	GGTCTC	2 cut(s)	246, 660
BsrBI	CCGCTC	2 cut(s)	422, 481
BsrGI	TGTACA	1 cut(s)	414
BsrI	ACTGG	3 cut(s)	16, 892, 1045
BssECI	CCNNGG	4 cut(s)	111, 232, 326, 462
BssMI	GATC	4 cut(s)	216, 330, 379, 1043
BssSI	CACGAG	1 cut(s)	238
BssT1I	CCWWGG	3 cut(s)	111, 232, 462
Bst2BI	CACGAG	1 cut(s)	238
Bst4CI	ACNGT	3 cut(s)	445, 741, 837
BstAUI	TGTACA	1 cut(s)	414
BstBI	TTCGAA	1 cut(s)	362
BstC8I	GCNNGC	1 cut(s)	197
BstDEI	CTNAG	3 cut(s)	158, 611, 642
BstDSI	CCRYGG	1 cut(s)	232
BstF5I	GGATG	2 cut(s)	292, 772
BstFNI	CGCG	1 cut(s)	150
BstH2I	RGCGCY	1 cut(s)	722
BstHHI	GCGC	1 cut(s)	721
BstKTI	GATC	4 cut(s)	219, 333, 382, 1046
BstMAI	GTCTC	4 cut(s)	227, 246, 312, 660
BstMBI	GATC	4 cut(s)	216, 330, 379, 1043
BstMWI	GCNNNNNNNGC	1 cut(s)	621
BstNSI	RCATGY	1 cut(s)	604
BstSCI	CCNGG	1 cut(s)	762
BstSFI	CTRYAG	1 cut(s)	193
BstUI	CGCG	1 cut(s)	150
BstV1I	GCAGC	2 cut(s)	40, 725
BstV2I	GAAGAC	1 cut(s)	497
BstX2I	RGATCY	2 cut(s)	330, 1043
BstYI	RGATCY	2 cut(s)	330, 1043
Bsu15I	ATCGAT	1 cut(s)	878
BsuI	GTATCC	1 cut(s)	285
BsuTUI	ATCGAT	1 cut(s)	878
BtgI	CCRYGG	1 cut(s)	232
BtsCI	GGATG	2 cut(s)	292, 772
BtsIMutI	CAGTG	3 cut(s)	9, 379, 672
BtuMI	TCGCGA	1 cut(s)	150
Cac8I	GCNNGC	1 cut(s)	197
CaiI	CAGNNNCTG	1 cut(s)	225
CciI	TCATGA	1 cut(s)	568
CfoI	GCGC	1 cut(s)	721
ClaI	ATCGAT	1 cut(s)	878
Csp6I	GTAC	2 cut(s)	415, 859
CspCI	CAANNNNNGTGG	2 cut(s)	904, 939
CviAII	CATG	7 cut(s)	25, 164, 233, 283, 569, 601, 848
CviQI	GTAC	2 cut(s)	415, 859
DdeI	CTNAG	3 cut(s)	158, 611, 642
DpnI	GATC	4 cut(s)	218, 332, 381, 1045
DpnII	GATC	4 cut(s)	216, 330, 379, 1043
EciI	GGCGGA	1 cut(s)	518
Eco130I	CCWWGG	3 cut(s)	111, 232, 462
Eco31I	GGTCTC	2 cut(s)	246, 660
Eco57I	CTGAAG	1 cut(s)	319
Eco88I	CYCGRG	1 cut(s)	325
EcoT14I	CCWWGG	3 cut(s)	111, 232, 462
ErhI	CCWWGG	3 cut(s)	111, 232, 462
FaeI	CATG	7 cut(s)	28, 167, 236, 286, 572, 604, 851
FalI	AAGNNNNNCTT	1 cut(s)	1055
FatI	CATG	7 cut(s)	24, 163, 232, 282, 568, 600, 847
Fnu4HI	GCNGC	3 cut(s)	29, 714, 717
FokI	GGATG	2 cut(s)	299, 779
Fsp4HI	GCNGC	3 cut(s)	29, 714, 717
FspBI	CTAG	2 cut(s)	432, 815
GlaI	GCGC	1 cut(s)	720
GluI	GCNGC	3 cut(s)	29, 714, 717
GsuI	CTGGAG	1 cut(s)	1037
HaeII	RGCGCY	1 cut(s)	722
HapII	CCGG	4 cut(s)	535, 547, 763, 1047
HhaI	GCGC	1 cut(s)	721
Hin1II	CATG	7 cut(s)	28, 167, 236, 286, 572, 604, 851
Hin6I	GCGC	1 cut(s)	719
HinP1I	GCGC	1 cut(s)	719
HindIII	AAGCTT	2 cut(s)	952, 1069
HinfI	GANTC	5 cut(s)	136, 160, 185, 538, 794
HpaII	CCGG	4 cut(s)	535, 547, 763, 1047
HphI	GGTGA	5 cut(s)	221, 515, 524, 752, 830
Hpy166II	GTNNAC	2 cut(s)	6, 415
Hpy188I	TCNGA	6 cut(s)	131, 314, 346, 660, 988, 1059
Hpy8I	GTNNAC	2 cut(s)	6, 415
Hpy99I	CGWCG	3 cut(s)	71, 150, 992
HpyAV	CCTTC	3 cut(s)	536, 684, 1057
HpyCH4III	ACNGT	3 cut(s)	445, 741, 837
HpyCH4IV	ACGT	1 cut(s)	990
HpyCH4V	TGCA	4 cut(s)	28, 195, 883, 980
HpyF10VI	GCNNNNNNNGC	1 cut(s)	621
HpyF3I	CTNAG	3 cut(s)	158, 611, 642
HpySE526I	ACGT	1 cut(s)	990
Hsp92II	CATG	7 cut(s)	28, 167, 236, 286, 572, 604, 851
HspAI	GCGC	1 cut(s)	719
Kpn2I	TCCGGA	1 cut(s)	1046
Kzo9I	GATC	4 cut(s)	216, 330, 379, 1043
LmnI	GCTCC	2 cut(s)	346, 682
Lsp1109I	GCAGC	2 cut(s)	40, 725
LweI	GCATC	2 cut(s)	777, 870
MaeI	CTAG	2 cut(s)	432, 815
MaeII	ACGT	1 cut(s)	990
MaeIII	GTNAC	5 cut(s)	186, 227, 434, 530, 818
MalI	GATC	4 cut(s)	218, 332, 381, 1045
MbiI	CCGCTC	2 cut(s)	422, 481
MboI	GATC	4 cut(s)	216, 330, 379, 1043
MboII	GAAGA	3 cut(s)	325, 502, 722
MfeI	CAATTG	1 cut(s)	676
MflI	RGATCY	2 cut(s)	330, 1043
MluCI	AATT	3 cut(s)	676, 852, 918
MlyI	GAGTC	2 cut(s)	169, 194
MmeI	TCCRAC	4 cut(s)	292, 683, 723, 1011
MroI	TCCGGA	1 cut(s)	1046
MroXI	GAANNNNTTC	1 cut(s)	368
MseI	TTAA	2 cut(s)	551, 1075
MslI	CAYNNNNRTG	4 cut(s)	23, 168, 765, 804
MspA1I	CMGCKG	2 cut(s)	31, 716
MspI	CCGG	4 cut(s)	535, 547, 763, 1047
MspR9I	CCNGG	1 cut(s)	764
MunI	CAATTG	1 cut(s)	676
Mva1269I	GAATGC	1 cut(s)	158
MvnI	CGCG	1 cut(s)	150
MwoI	GCNNNNNNNGC	1 cut(s)	621
NciI	CCSGG	1 cut(s)	764
NcoI	CCATGG	1 cut(s)	232
NdeII	GATC	4 cut(s)	216, 330, 379, 1043
NlaIII	CATG	7 cut(s)	28, 167, 236, 286, 572, 604, 851
NlaIV	GGNNCC	2 cut(s)	16, 1045
NmeAIII	GCCGAG	1 cut(s)	790
NmuCI	GTSAC	5 cut(s)	186, 227, 434, 530, 818
NruI	TCGCGA	1 cut(s)	150
NspI	RCATGY	1 cut(s)	604
NspV	TTCGAA	1 cut(s)	362
PagI	TCATGA	1 cut(s)	568
PctI	GAATGC	1 cut(s)	158
PdmI	GAANNNNTTC	1 cut(s)	368
PfeI	GAWTC	3 cut(s)	136, 538, 794
PflFI	GACNNNGTC	2 cut(s)	71, 308
PkrI	GCNGC	3 cut(s)	30, 715, 718
PleI	GAGTC	2 cut(s)	168, 193
PpsI	GAGTC	2 cut(s)	168, 193
PspN4I	GGNNCC	2 cut(s)	16, 1045
PstI	CTGCAG	1 cut(s)	197
PstNI	CAGNNNCTG	1 cut(s)	225
PsuI	RGATCY	2 cut(s)	330, 1043
PsyI	GACNNNGTC	2 cut(s)	71, 308
PvuII	CAGCTG	1 cut(s)	31
RruI	TCGCGA	1 cut(s)	150
RsaI	GTAC	2 cut(s)	416, 860
RsaNI	GTAC	2 cut(s)	415, 859
RseI	CAYNNNNRTG	4 cut(s)	23, 168, 765, 804
SaqAI	TTAA	2 cut(s)	551, 1075
SatI	GCNGC	3 cut(s)	29, 714, 717
Sau3AI	GATC	4 cut(s)	216, 330, 379, 1043
SchI	GAGTC	2 cut(s)	169, 194
ScrFI	CCNGG	1 cut(s)	764
SfaNI	GCATC	2 cut(s)	777, 870
SfcI	CTRYAG	1 cut(s)	193
SfuI	TTCGAA	1 cut(s)	362
SmiMI	CAYNNNNRTG	4 cut(s)	23, 168, 765, 804
SmlI	CTYRAG	1 cut(s)	299
SmoI	CTYRAG	1 cut(s)	299
Sse9I	AATT	3 cut(s)	676, 852, 918
SsiI	CCGC	6 cut(s)	422, 481, 503, 515, 622, 716
SspMI	CTAG	2 cut(s)	432, 815
StyD4I	CCNGG	1 cut(s)	762
StyI	CCWWGG	3 cut(s)	111, 232, 462
TaaI	ACNGT	3 cut(s)	445, 741, 837
TaiI	ACGT	1 cut(s)	993
TaqI	TCGA	5 cut(s)	75, 362, 486, 878, 1037
TasI	AATT	3 cut(s)	676, 852, 918
TatI	WGTACW	1 cut(s)	414
TauI	GCSGC	1 cut(s)	719
TfiI	GAWTC	3 cut(s)	136, 538, 794
Tru1I	TTAA	2 cut(s)	551, 1075
Tru9I	TTAA	2 cut(s)	551, 1075
TscAI	CASTG	3 cut(s)	16, 379, 672
TseFI	GTSAC	5 cut(s)	186, 227, 434, 530, 818
TseI	GCWGC	2 cut(s)	28, 713
Tsp45I	GTSAC	5 cut(s)	186, 227, 434, 530, 818
TspDTI	ATGAA	4 cut(s)	37, 557, 585, 864
TspGWI	ACGGA	1 cut(s)	453
TspRI	CASTG	3 cut(s)	16, 379, 672
Tth111I	GACNNNGTC	2 cut(s)	71, 308
XceI	RCATGY	1 cut(s)	604
XcmI	CCANNNNNNNNNTGG	1 cut(s)	263
XmnI	GAANNNNTTC	1 cut(s)	368
XspI	CTAG	2 cut(s)	432, 815

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.