Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0028326.1

Orthogroup ID

OG0016104

Physical Location & Seq

Genomic Coordinates Reverse (-)

4955 .. 5371

Gene Structure 417 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0028326.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 417 bp

atgcccaccaccaccatgcagctgaaccacctctgcttcattttgccaccagactgcgacgaagtcgagccaccggacgacgaaaaccagcaaaaacccaccaaggaggtgttagaggtcagaaagaatcacacctgtcgcgaatgcctgagtcatgttcgtgctttcgtcaaagagtcactctgcaggctctacgacctgaaatggatcagtctctgtcaccatgacacgagaaaaaaccgagaccagcaccattctggggtgtttcaggacatggatgggatacaactcaaggacaaggtcggaggagacaacccgaggatcttcagcttctcggagcttttaatacaaaacctatttctaagcatctatttgaagggaacaataatgaatccttatggatttcccaataactaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0005575 GO:0005623 GO:0005886 GO:0006950 GO:0008150 GO:0009605 GO:0009607 GO:0009611 GO:0009617 GO:0009719 GO:0009725 GO:0009751 GO:0009753 GO:0009987 GO:0010033 GO:0014070 GO:0016020 GO:0032870 GO:0035690 GO:0042221 GO:0042493 GO:0043207 GO:0044464 GO:0046677 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0070887 GO:0071229 GO:0071236 GO:0071310 GO:0071395 GO:0071407 GO:0071446 GO:0071495 GO:0071944 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

138

Amino Acids

16.09

Weight (kDa)

6.14

Isoelectric Point (pI)

26.32

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016104)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G32800
fragaria_vesca	FvH4_4g14630 FvH4_4g15750 FvH4_5g04690
malus_domestica	MD04G1008600.v1.1
prunus_persica	Prupe.1G007200_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0415351
rosa_laevigata	RLG00000008076
rosa_multiflora	Rmu_sc0013726.1_g000001 Rmu_sc0028326.1_g000002
rosa_roxburghii	Rroxscaffold_5G00359130
rosa_rugosa	Rorug04G0133800
rosa_samantha	Rh4BG192800 Rh4DG191900
rosa_wichuraiana	Rw4G016520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	141
AclWI	GGATC	2 cut(s)	215, 329
AcuI	CTGAAG	1 cut(s)	310
AfiI	CCNNNNNNNGG	1 cut(s)	259
AgsI	TTSAA	1 cut(s)	376
AluBI	AGCT	3 cut(s)	22, 330, 340
AluI	AGCT	3 cut(s)	22, 330, 340
Alw26I	GTCTC	3 cut(s)	218, 237, 303
AlwI	GGATC	2 cut(s)	215, 329
AlwNI	CAGNNNCTG	1 cut(s)	216
Ama87I	CYCGRG	1 cut(s)	316
ApeKI	GCWGC	1 cut(s)	19
AsuHPI	GGTGA	1 cut(s)	212
AvaI	CYCGRG	1 cut(s)	316
BauI	CACGAG	1 cut(s)	229
BbvI	GCAGC	1 cut(s)	31
BccI	CCATC	1 cut(s)	272
BciVI	GTATCC	1 cut(s)	276
BcoDI	GTCTC	3 cut(s)	218, 237, 303
BfmI	CTRYAG	1 cut(s)	184
BfuI	GTATCC	1 cut(s)	276
BisI	GCNGC	1 cut(s)	20
BlsI	GCNGC	1 cut(s)	21
BmeT110I	CYCGRG	1 cut(s)	316
BmsI	GCATC	1 cut(s)	375
BpuEI	CTTGAG	1 cut(s)	275
BsaI	GGTCTC	1 cut(s)	237
BsaJI	CCNNGG	2 cut(s)	102, 317
BsaWI	WCCGGW	1 cut(s)	73
Bsc4I	CCNNNNNNNGG	1 cut(s)	259
BseDI	CCNNGG	2 cut(s)	102, 317
BseGI	GGATG	1 cut(s)	283
BseLI	CCNNNNNNNGG	1 cut(s)	259
BseMII	CTCAG	1 cut(s)	140
BseRI	GAGGAG	1 cut(s)	321
BseXI	GCAGC	1 cut(s)	31
Bsh1236I	CGCG	1 cut(s)	141
BsiHKCI	CYCGRG	1 cut(s)	316
BsiSI	CCGG	1 cut(s)	74
BslI	CCNNNNNNNGG	1 cut(s)	259
BsmAI	GTCTC	3 cut(s)	218, 237, 303
BsmI	GAATGC	1 cut(s)	149
Bso31I	GGTCTC	1 cut(s)	237
BsoBI	CYCGRG	1 cut(s)	316
Bsp143I	GATC	2 cut(s)	207, 321
Bsp68I	TCGCGA	1 cut(s)	141
BspCNI	CTCAG	1 cut(s)	141
BspFNI	CGCG	1 cut(s)	141
BspMAI	CTGCAG	1 cut(s)	188
BspPI	GGATC	2 cut(s)	215, 329
BspTNI	GGTCTC	1 cut(s)	237
BssECI	CCNNGG	2 cut(s)	102, 317
BssMI	GATC	2 cut(s)	207, 321
BssSI	CACGAG	1 cut(s)	229
BssT1I	CCWWGG	1 cut(s)	102
Bst2BI	CACGAG	1 cut(s)	229
BstC8I	GCNNGC	1 cut(s)	188
BstDEI	CTNAG	2 cut(s)	149, 362
BstF5I	GGATG	1 cut(s)	283
BstFNI	CGCG	1 cut(s)	141
BstKTI	GATC	2 cut(s)	210, 324
BstMAI	GTCTC	3 cut(s)	218, 237, 303
BstMBI	GATC	2 cut(s)	207, 321
BstSFI	CTRYAG	1 cut(s)	184
BstUI	CGCG	1 cut(s)	141
BstV1I	GCAGC	1 cut(s)	31
BstX2I	RGATCY	1 cut(s)	321
BstYI	RGATCY	1 cut(s)	321
BsuI	GTATCC	1 cut(s)	276
BtsCI	GGATG	1 cut(s)	283
BtuMI	TCGCGA	1 cut(s)	141
Cac8I	GCNNGC	1 cut(s)	188
CaiI	CAGNNNCTG	1 cut(s)	216
CviAII	CATG	4 cut(s)	16, 155, 224, 274
CviJI	RGCY	5 cut(s)	22, 70, 190, 330, 340
CviKI_1	RGCY	5 cut(s)	22, 70, 190, 330, 340
DdeI	CTNAG	2 cut(s)	149, 362
DpnI	GATC	2 cut(s)	209, 323
DpnII	GATC	2 cut(s)	207, 321
Eco130I	CCWWGG	1 cut(s)	102
Eco31I	GGTCTC	1 cut(s)	237
Eco57I	CTGAAG	1 cut(s)	310
Eco88I	CYCGRG	1 cut(s)	316
EcoT14I	CCWWGG	1 cut(s)	102
ErhI	CCWWGG	1 cut(s)	102
FaeI	CATG	4 cut(s)	19, 158, 227, 277
FaiI	YATR	5 cut(s)	17, 156, 225, 275, 399
FatI	CATG	4 cut(s)	15, 154, 223, 273
Fnu4HI	GCNGC	1 cut(s)	20
FokI	GGATG	1 cut(s)	290
Fsp4HI	GCNGC	1 cut(s)	20
GluI	GCNGC	1 cut(s)	20
HapII	CCGG	1 cut(s)	74
Hin1II	CATG	4 cut(s)	19, 158, 227, 277
HinfI	GANTC	4 cut(s)	127, 151, 176, 391
HpaII	CCGG	1 cut(s)	74
HphI	GGTGA	1 cut(s)	212
Hpy188I	TCNGA	3 cut(s)	122, 305, 337
Hpy188III	TCNNGA	2 cut(s)	140, 269
Hpy99I	CGWCG	2 cut(s)	62, 83
HpyAV	CCTTC	1 cut(s)	370
HpyCH4V	TGCA	2 cut(s)	19, 186
HpyF3I	CTNAG	2 cut(s)	149, 362
Hsp92II	CATG	4 cut(s)	19, 158, 227, 277
Kzo9I	GATC	2 cut(s)	207, 321
LmnI	GCTCC	1 cut(s)	337
Lsp1109I	GCAGC	1 cut(s)	31
LweI	GCATC	1 cut(s)	375
MaeIII	GTNAC	2 cut(s)	177, 218
MalI	GATC	2 cut(s)	209, 323
MboI	GATC	2 cut(s)	207, 321
MboII	GAAGA	1 cut(s)	316
MflI	RGATCY	1 cut(s)	321
MlyI	GAGTC	2 cut(s)	160, 185
MmeI	TCCRAC	1 cut(s)	283
MnlI	CCTC	5 cut(s)	41, 100, 109, 299, 312
MseI	TTAA	1 cut(s)	344
MslI	CAYNNNNRTG	2 cut(s)	14, 159
MspA1I	CMGCKG	1 cut(s)	22
MspI	CCGG	1 cut(s)	74
Mva1269I	GAATGC	1 cut(s)	149
MvnI	CGCG	1 cut(s)	141
NdeII	GATC	2 cut(s)	207, 321
NlaIII	CATG	4 cut(s)	19, 158, 227, 277
NmuCI	GTSAC	2 cut(s)	177, 218
NruI	TCGCGA	1 cut(s)	141
PctI	GAATGC	1 cut(s)	149
PfeI	GAWTC	2 cut(s)	127, 391
PflFI	GACNNNGTC	2 cut(s)	62, 299
PkrI	GCNGC	1 cut(s)	21
PleI	GAGTC	2 cut(s)	159, 184
PpsI	GAGTC	2 cut(s)	159, 184
PstI	CTGCAG	1 cut(s)	188
PstNI	CAGNNNCTG	1 cut(s)	216
PsuI	RGATCY	1 cut(s)	321
PsyI	GACNNNGTC	2 cut(s)	62, 299
PvuII	CAGCTG	1 cut(s)	22
RruI	TCGCGA	1 cut(s)	141
RseI	CAYNNNNRTG	2 cut(s)	14, 159
SaqAI	TTAA	1 cut(s)	344
SatI	GCNGC	1 cut(s)	20
Sau3AI	GATC	2 cut(s)	207, 321
SchI	GAGTC	2 cut(s)	160, 185
SfaNI	GCATC	1 cut(s)	375
SfcI	CTRYAG	1 cut(s)	184
SmiMI	CAYNNNNRTG	2 cut(s)	14, 159
SmlI	CTYRAG	1 cut(s)	290
SmoI	CTYRAG	1 cut(s)	290
StyI	CCWWGG	1 cut(s)	102
TaqI	TCGA	1 cut(s)	66
TfiI	GAWTC	2 cut(s)	127, 391
Tru1I	TTAA	1 cut(s)	344
Tru9I	TTAA	1 cut(s)	344
TseFI	GTSAC	2 cut(s)	177, 218
TseI	GCWGC	1 cut(s)	19
Tsp45I	GTSAC	2 cut(s)	177, 218
TspDTI	ATGAA	2 cut(s)	28, 404
Tth111I	GACNNNGTC	2 cut(s)	62, 299
XcmI	CCANNNNNNNNNTGG	1 cut(s)	254

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.