Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4B

Orthogroup ID

OG0016104

Physical Location & Seq

Genomic Coordinates Forward (+)

33284018 .. 33285720

Gene Structure 1703 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4BG192800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1125 bp

ATGTCCACCACCACCATGCAGCTGAACCACCTCTGCTTCATTTTGCCACCAGACTGCGACGAAATCGAGCCACCGGACCACGAAAACCAGCAAAAACCCACCAAGGAGGTGTTAGAGGTCAGAAAGAATCACACCCGTCGCGAATGCCTGAGTCATGTTCGTGCTTTCGTCAAAGAGTCACTCTGCAGGCTCTACGACCTGAAATGGATCAGTCTCTGTCACCATGACACGAGAAAAAACCGAGACCAGCACCATTCTGGGGTGTTTCAGGACATGGATGGGATACAACTCAAGGACAAGGTCGGAGGAGACAACCCGAGGATCTTCAGCTTCTCGGAGCTTTATATTGGTTCGAATGGTTTCAGTGAGGATCAAGTTTTAGGGAGTGGAGGTTTTGGGAAAGTGTACAGAGCGGTTCTGCCTAGTGATGGAACTGTTGTTGCTGTGAAGTGCTTGGTGGAGAGAGGAGAGCGGTTCGAGAAGACTTTTGTGGCGGAGTTGGTCGCGGTGGCTCACCTTCGTCACCGGAATCTTGTCCGGCTAAGGGGGTGGGCAGTAGATCTCACTTGTCCAGATGATCAGATCATATTGCTCGACTGGATCCGGAAGCTGTCTGATGAAGGGAAGCTTTTAAAAGCAAGGGACAAGAGGATTCCAGACGGGTCTTATCAGCTTCTTGACATGGAGTATCAGTTGCATCTTGCACTTCTTTGTACACTTCAAAATCCACAATCGCGACCAAACATGAAATGGGTTGTGGAAGCACTTTCTGGCAACATCCATGGCAAATTGCCAAGCCTCCCATCGTTTCAGTGCCACCCTCTCTACATCTCTCTATCCTCTGCCAGCAATACTAGCACAAACACCAGGTACACCATAGCCACCAGCACTGAAACTCTTGCATCATCTATTCTATCAACCTATGTCACAGCCACTGGAGAAACAATATATGCAACTGCTGACAATGGAAGCAGTGGAAGCAGTGAGGTCAGCACATTCTCAGAGGGTAGCAGAGCTGGACTTTGGGACAGCCTACCAGGGTTTTCTCAACAACCGCCATCATGTCCTGGTAAAGCGGCTTGGAATGAAGACTTGCCCTGCATTGCGGGCACGATTCTCAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0005575 GO:0005623 GO:0005886 GO:0006950 GO:0008150 GO:0009605 GO:0009607 GO:0009611 GO:0009617 GO:0009719 GO:0009725 GO:0009751 GO:0009753 GO:0009987 GO:0010033 GO:0014070 GO:0016020 GO:0032870 GO:0035690 GO:0042221 GO:0042493 GO:0043207 GO:0044464 GO:0046677 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0070887 GO:0071229 GO:0071236 GO:0071310 GO:0071395 GO:0071407 GO:0071446 GO:0071495 GO:0071944 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

374

Amino Acids

41.65

Weight (kDa)

6.36

Isoelectric Point (pI)

38.74

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	122 - 197	3.3e-09	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	124 - 190	1.7e-07	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016104)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G32800
fragaria_vesca	FvH4_4g14630 FvH4_4g15750 FvH4_5g04690
malus_domestica	MD04G1008600.v1.1
prunus_persica	Prupe.1G007200_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0415351
rosa_laevigata	RLG00000008076
rosa_multiflora	Rmu_sc0013726.1_g000001 Rmu_sc0028326.1_g000002
rosa_roxburghii	Rroxscaffold_5G00359130
rosa_rugosa	Rorug04G0133800
rosa_samantha	Rh4BG192800 Rh4DG191900
rosa_wichuraiana	Rw4G016520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	2 cut(s)	413, 472
AccII	CGCG	3 cut(s)	141, 506, 736
AccIII	TCCGGA	1 cut(s)	603
AciI	CCGC	7 cut(s)	413, 472, 494, 506, 1055, 1076, 1106
AclWI	GGATC	5 cut(s)	215, 329, 378, 595, 608
AcuI	CTGAAG	1 cut(s)	310
AfaI	GTAC	3 cut(s)	407, 715, 872
AfiI	CCNNNNNNNGG	3 cut(s)	259, 428, 544
AgsI	TTSAA	1 cut(s)	722
AjnI	CCWGG	3 cut(s)	866, 1036, 1066
AluBI	AGCT	7 cut(s)	22, 330, 340, 610, 628, 673, 1016
AluI	AGCT	7 cut(s)	22, 330, 340, 610, 628, 673, 1016
Alw26I	GTCTC	3 cut(s)	218, 237, 303
AlwI	GGATC	5 cut(s)	215, 329, 378, 595, 608
AlwNI	CAGNNNCTG	2 cut(s)	216, 935
Ama87I	CYCGRG	1 cut(s)	316
Aor13HI	TCCGGA	1 cut(s)	603
ApeKI	GCWGC	1 cut(s)	19
Asp700I	GAANNNNTTC	1 cut(s)	359
AspS9I	GGNCC	1 cut(s)	76
AsuHPI	GGTGA	3 cut(s)	212, 506, 515
AsuII	TTCGAA	1 cut(s)	353
AvaI	CYCGRG	1 cut(s)	316
AvaII	GGWCC	1 cut(s)	76
BaeGI	GKGCMC	1 cut(s)	1112
BamHI	GGATCC	1 cut(s)	600
BauI	CACGAG	1 cut(s)	229
BbsI	GAAGAC	2 cut(s)	488, 1095
BbvI	GCAGC	1 cut(s)	31
BccI	CCATC	4 cut(s)	272, 422, 811, 1066
BciT130I	CCWGG	3 cut(s)	868, 1038, 1068
BciVI	GTATCC	1 cut(s)	276
BclI	TGATCA	1 cut(s)	577
BcoDI	GTCTC	3 cut(s)	218, 237, 303
BfaI	CTAG	2 cut(s)	423, 855
BfmI	CTRYAG	1 cut(s)	184
BfuI	GTATCC	1 cut(s)	276
BglII	AGATCT	1 cut(s)	559
BisI	GCNGC	2 cut(s)	20, 1077
BlsI	GCNGC	2 cut(s)	21, 1078
Bme1390I	CCNGG	3 cut(s)	868, 1038, 1068
Bme18I	GGWCC	1 cut(s)	76
BmeT110I	CYCGRG	1 cut(s)	316
BmgT120I	GGNCC	1 cut(s)	76
BmiI	GGNNCC	1 cut(s)	602
BmrFI	CCNGG	3 cut(s)	868, 1038, 1068
BmsI	GCATC	2 cut(s)	706, 911
BpiI	GAAGAC	2 cut(s)	488, 1095
BpmI	CTGGAG	1 cut(s)	957
Bpu10I	CCTNAGC	1 cut(s)	542
Bpu14I	TTCGAA	1 cut(s)	353
BpuEI	CTTGAG	1 cut(s)	275
BsaI	GGTCTC	1 cut(s)	237
BsaJI	CCNNGG	4 cut(s)	102, 317, 781, 1037
BsaWI	WCCGGW	3 cut(s)	73, 525, 603
BsaXI	ACNNNNNCTCC	4 cut(s)	376, 406, 677, 707
Bsc4I	CCNNNNNNNGG	3 cut(s)	259, 428, 544
Bse1I	ACTGG	2 cut(s)	602, 940
Bse3DI	GCAATG	1 cut(s)	1101
BseAI	TCCGGA	1 cut(s)	603
BseBI	CCWGG	3 cut(s)	868, 1038, 1068
BseDI	CCNNGG	4 cut(s)	102, 317, 781, 1037
BseGI	GGATG	2 cut(s)	283, 777
BseLI	CCNNNNNNNGG	3 cut(s)	259, 428, 544
BseMI	GCAATG	1 cut(s)	1101
BseMII	CTCAG	2 cut(s)	140, 1014
BseNI	ACTGG	2 cut(s)	602, 940
BseRI	GAGGAG	2 cut(s)	321, 480
BseSI	GKGCMC	1 cut(s)	1112
BseXI	GCAGC	1 cut(s)	31
Bsh1236I	CGCG	3 cut(s)	141, 506, 736
BsiHKCI	CYCGRG	1 cut(s)	316
BsiSI	CCGG	4 cut(s)	74, 526, 538, 604
BslFI	GGGAC	2 cut(s)	656, 1040
BslI	CCNNNNNNNGG	3 cut(s)	259, 428, 544
BsmAI	GTCTC	3 cut(s)	218, 237, 303
BsmFI	GGGAC	2 cut(s)	656, 1040
BsmI	GAATGC	1 cut(s)	149
Bso31I	GGTCTC	1 cut(s)	237
BsoBI	CYCGRG	1 cut(s)	316
Bsp119I	TTCGAA	1 cut(s)	353
Bsp1286I	GDGCHC	1 cut(s)	1112
Bsp13I	TCCGGA	1 cut(s)	603
Bsp1407I	TGTACA	2 cut(s)	405, 713
Bsp143I	GATC	7 cut(s)	207, 321, 370, 559, 577, 582, 600
Bsp19I	CCATGG	1 cut(s)	781
Bsp68I	TCGCGA	2 cut(s)	141, 736
BspACI	CCGC	7 cut(s)	413, 472, 494, 506, 1055, 1076, 1106
BspCNI	CTCAG	2 cut(s)	141, 1013
BspEI	TCCGGA	1 cut(s)	603
BspFNI	CGCG	3 cut(s)	141, 506, 736
BspLI	GGNNCC	1 cut(s)	602
BspMAI	CTGCAG	1 cut(s)	188
BspPI	GGATC	5 cut(s)	215, 329, 378, 595, 608
BspT104I	TTCGAA	1 cut(s)	353
BspTNI	GGTCTC	1 cut(s)	237
BsrBI	CCGCTC	2 cut(s)	413, 472
BsrDI	GCAATG	1 cut(s)	1101
BsrGI	TGTACA	2 cut(s)	405, 713
BsrI	ACTGG	2 cut(s)	602, 940
BssECI	CCNNGG	4 cut(s)	102, 317, 781, 1037
BssMI	GATC	7 cut(s)	207, 321, 370, 559, 577, 582, 600
BssSI	CACGAG	1 cut(s)	229
BssT1I	CCWWGG	2 cut(s)	102, 781
Bst2BI	CACGAG	1 cut(s)	229
Bst2UI	CCWGG	3 cut(s)	868, 1038, 1068
Bst4CI	ACNGT	1 cut(s)	436
BstAUI	TGTACA	2 cut(s)	405, 713
BstBI	TTCGAA	1 cut(s)	353
BstC8I	GCNNGC	3 cut(s)	188, 847, 1108
BstDEI	CTNAG	3 cut(s)	149, 542, 1000
BstDSI	CCRYGG	1 cut(s)	781
BstF5I	GGATG	2 cut(s)	283, 777
BstFNI	CGCG	3 cut(s)	141, 506, 736
BstKTI	GATC	7 cut(s)	210, 324, 373, 562, 580, 585, 603
BstMAI	GTCTC	3 cut(s)	218, 237, 303
BstMBI	GATC	7 cut(s)	207, 321, 370, 559, 577, 582, 600
BstMWI	GCNNNNNNNGC	3 cut(s)	855, 978, 1107
BstNI	CCWGG	3 cut(s)	868, 1038, 1068
BstSCI	CCNGG	3 cut(s)	866, 1036, 1066
BstSFI	CTRYAG	1 cut(s)	184
BstSLI	GKGCMC	1 cut(s)	1112
BstUI	CGCG	3 cut(s)	141, 506, 736
BstV1I	GCAGC	1 cut(s)	31
BstV2I	GAAGAC	2 cut(s)	488, 1095
BstX2I	RGATCY	3 cut(s)	321, 559, 600
BstYI	RGATCY	3 cut(s)	321, 559, 600
BsuI	GTATCC	1 cut(s)	276
BtgI	CCRYGG	1 cut(s)	781
BtsCI	GGATG	2 cut(s)	283, 777
BtsI	GCAGTG	2 cut(s)	979, 988
BtsIMutI	CAGTG	6 cut(s)	370, 818, 888, 933, 979, 988
BtuMI	TCGCGA	2 cut(s)	141, 736
Cac8I	GCNNGC	3 cut(s)	188, 847, 1108
CaiI	CAGNNNCTG	2 cut(s)	216, 935
Cfr13I	GGNCC	1 cut(s)	76
CsiI	ACCWGGT	1 cut(s)	866
Csp6I	GTAC	3 cut(s)	406, 714, 871
CviAII	CATG	8 cut(s)	16, 155, 224, 274, 682, 745, 782, 1062
CviQI	GTAC	3 cut(s)	406, 714, 871
DdeI	CTNAG	3 cut(s)	149, 542, 1000
DpnI	GATC	7 cut(s)	209, 323, 372, 561, 579, 584, 602
DpnII	GATC	7 cut(s)	207, 321, 370, 559, 577, 582, 600
DraI	TTTAAA	1 cut(s)	633
EciI	GGCGGA	1 cut(s)	509
Eco130I	CCWWGG	2 cut(s)	102, 781
Eco31I	GGTCTC	1 cut(s)	237
Eco47I	GGWCC	1 cut(s)	76
Eco57I	CTGAAG	1 cut(s)	310
Eco88I	CYCGRG	1 cut(s)	316
EcoRII	CCWGG	3 cut(s)	866, 1036, 1066
EcoT14I	CCWWGG	2 cut(s)	102, 781
ErhI	CCWWGG	2 cut(s)	102, 781
FaeI	CATG	8 cut(s)	19, 158, 227, 277, 685, 748, 785, 1065
FalI	AAGNNNNNCTT	2 cut(s)	612, 644
FaqI	GGGAC	2 cut(s)	656, 1040
FatI	CATG	8 cut(s)	15, 154, 223, 273, 681, 744, 781, 1061
FauI	CCCGC	1 cut(s)	1099
FbaI	TGATCA	1 cut(s)	577
Fnu4HI	GCNGC	2 cut(s)	20, 1077
FokI	GGATG	2 cut(s)	290, 764
Fsp4HI	GCNGC	2 cut(s)	20, 1077
FspBI	CTAG	2 cut(s)	423, 855
GluI	GCNGC	2 cut(s)	20, 1077
GsuI	CTGGAG	1 cut(s)	957
HapII	CCGG	4 cut(s)	74, 526, 538, 604
Hin1II	CATG	8 cut(s)	19, 158, 227, 277, 685, 748, 785, 1065
HindIII	AAGCTT	1 cut(s)	626
HinfI	GANTC	6 cut(s)	127, 151, 176, 529, 652, 1114
HpaII	CCGG	4 cut(s)	74, 526, 538, 604
HphI	GGTGA	3 cut(s)	212, 506, 515
Hpy166II	GTNNAC	4 cut(s)	6, 406, 716, 873
Hpy188I	TCNGA	6 cut(s)	122, 305, 337, 582, 616, 1003
Hpy188III	TCNNGA	8 cut(s)	140, 269, 478, 572, 604, 656, 677, 735
Hpy8I	GTNNAC	4 cut(s)	6, 406, 716, 873
Hpy99I	CGWCG	2 cut(s)	62, 141
HpyAV	CCTTC	2 cut(s)	527, 614
HpyCH4III	ACNGT	1 cut(s)	436
HpyCH4V	TGCA	7 cut(s)	19, 186, 697, 704, 902, 953, 1101
HpyF10VI	GCNNNNNNNGC	3 cut(s)	855, 978, 1107
HpyF3I	CTNAG	3 cut(s)	149, 542, 1000
Hsp92II	CATG	8 cut(s)	19, 158, 227, 277, 685, 748, 785, 1065
Kpn2I	TCCGGA	1 cut(s)	603
Ksp22I	TGATCA	1 cut(s)	577
Kzo9I	GATC	7 cut(s)	207, 321, 370, 559, 577, 582, 600
LmnI	GCTCC	1 cut(s)	337
Lsp1109I	GCAGC	1 cut(s)	31
LweI	GCATC	2 cut(s)	706, 911
MabI	ACCWGGT	1 cut(s)	866
MaeI	CTAG	2 cut(s)	423, 855
MaeIII	GTNAC	4 cut(s)	177, 218, 521, 925
MalI	GATC	7 cut(s)	209, 323, 372, 561, 579, 584, 602
MbiI	CCGCTC	2 cut(s)	413, 472
MboI	GATC	7 cut(s)	207, 321, 370, 559, 577, 582, 600
MboII	GAAGA	3 cut(s)	316, 493, 1100
MflI	RGATCY	3 cut(s)	321, 559, 600
MhlI	GDGCHC	1 cut(s)	1112
MluCI	AATT	1 cut(s)	788
MlyI	GAGTC	2 cut(s)	160, 185
MmeI	TCCRAC	1 cut(s)	283
MroI	TCCGGA	1 cut(s)	603
MroXI	GAANNNNTTC	1 cut(s)	359
MseI	TTAA	1 cut(s)	632
MslI	CAYNNNNRTG	2 cut(s)	14, 159
MspA1I	CMGCKG	1 cut(s)	22
MspI	CCGG	4 cut(s)	74, 526, 538, 604
MspR9I	CCNGG	3 cut(s)	868, 1038, 1068
Mva1269I	GAATGC	1 cut(s)	149
MvaI	CCWGG	3 cut(s)	868, 1038, 1068
MvnI	CGCG	3 cut(s)	141, 506, 736
MwoI	GCNNNNNNNGC	3 cut(s)	855, 978, 1107
NcoI	CCATGG	1 cut(s)	781
NdeII	GATC	7 cut(s)	207, 321, 370, 559, 577, 582, 600
NlaIII	CATG	8 cut(s)	19, 158, 227, 277, 685, 748, 785, 1065
NlaIV	GGNNCC	1 cut(s)	602
NmuCI	GTSAC	4 cut(s)	177, 218, 521, 925
NruI	TCGCGA	2 cut(s)	141, 736
NspV	TTCGAA	1 cut(s)	353
PctI	GAATGC	1 cut(s)	149
PdmI	GAANNNNTTC	1 cut(s)	359
PfeI	GAWTC	4 cut(s)	127, 529, 652, 1114
PflFI	GACNNNGTC	1 cut(s)	299
PkrI	GCNGC	2 cut(s)	21, 1078
PleI	GAGTC	2 cut(s)	159, 184
PpsI	GAGTC	2 cut(s)	159, 184
Psp6I	CCWGG	3 cut(s)	866, 1036, 1066
PspGI	CCWGG	3 cut(s)	866, 1036, 1066
PspN4I	GGNNCC	1 cut(s)	602
PspPI	GGNCC	1 cut(s)	76
PstI	CTGCAG	1 cut(s)	188
PstNI	CAGNNNCTG	2 cut(s)	216, 935
PsuI	RGATCY	3 cut(s)	321, 559, 600
PsyI	GACNNNGTC	1 cut(s)	299
PvuII	CAGCTG	1 cut(s)	22
RruI	TCGCGA	2 cut(s)	141, 736
RsaI	GTAC	3 cut(s)	407, 715, 872
RsaNI	GTAC	3 cut(s)	406, 714, 871
RseI	CAYNNNNRTG	2 cut(s)	14, 159
SaqAI	TTAA	1 cut(s)	632
SatI	GCNGC	2 cut(s)	20, 1077
Sau3AI	GATC	7 cut(s)	207, 321, 370, 559, 577, 582, 600
Sau96I	GGNCC	1 cut(s)	76
SchI	GAGTC	2 cut(s)	160, 185
ScrFI	CCNGG	3 cut(s)	868, 1038, 1068
SduI	GDGCHC	1 cut(s)	1112
SexAI	ACCWGGT	1 cut(s)	866
SfaNI	GCATC	2 cut(s)	706, 911
SfcI	CTRYAG	1 cut(s)	184
SfuI	TTCGAA	1 cut(s)	353
SinI	GGWCC	1 cut(s)	76
SmiMI	CAYNNNNRTG	2 cut(s)	14, 159
SmlI	CTYRAG	1 cut(s)	290
SmoI	CTYRAG	1 cut(s)	290
Sse9I	AATT	1 cut(s)	788
SsiI	CCGC	7 cut(s)	413, 472, 494, 506, 1055, 1076, 1106
SspMI	CTAG	2 cut(s)	423, 855
StyD4I	CCNGG	3 cut(s)	866, 1036, 1066
StyI	CCWWGG	2 cut(s)	102, 781
TaaI	ACNGT	1 cut(s)	436
TaqI	TCGA	4 cut(s)	66, 353, 477, 594
TasI	AATT	1 cut(s)	788
TatI	WGTACW	2 cut(s)	405, 713
TauI	GCSGC	1 cut(s)	1079
TfiI	GAWTC	4 cut(s)	127, 529, 652, 1114
Tru1I	TTAA	1 cut(s)	632
Tru9I	TTAA	1 cut(s)	632
TscAI	CASTG	6 cut(s)	370, 818, 895, 940, 979, 988
TseFI	GTSAC	4 cut(s)	177, 218, 521, 925
TseI	GCWGC	1 cut(s)	19
Tsp45I	GTSAC	4 cut(s)	177, 218, 521, 925
TspDTI	ATGAA	4 cut(s)	28, 633, 761, 1101
TspRI	CASTG	6 cut(s)	370, 818, 895, 940, 979, 988
Tth111I	GACNNNGTC	1 cut(s)	299
VpaK11BI	GGWCC	1 cut(s)	76
XcmI	CCANNNNNNNNNTGG	2 cut(s)	254, 747
XmnI	GAANNNNTTC	1 cut(s)	359
XspI	CTAG	2 cut(s)	423, 855

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.