Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0015867

Physical Location & Seq

Genomic Coordinates Reverse (-)

47732713 .. 47734065

Gene Structure 1353 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ39165

Sequence Viewer

CDS Protein Promoter (2k)

Length: 237 bp

ATGTTTATCTGCATGCTTTCTCAGGCTATTGATCGAGGGGAAAACCTTACTGTGCTTGTTGACAAGACCGAAACCCTTCGTTCTCAGGCCCAAGATTTCAAAAATAAAGGGACACAAATGAGAAGGAAGCTGTGGTATCAAAACATGAAAATAAAGTTGGTGGTTTTTGGAATCTTGTTACTTCTGATCTTGGTTATCTGGCTTTCTATTTGTCAGGGATTTGACTGCACAAACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000149 GO:0003674 GO:0005484 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006810 GO:0006887 GO:0006906 GO:0006996 GO:0008150 GO:0009987 GO:0016020 GO:0016043 GO:0016050 GO:0016192 GO:0031201 GO:0032940 GO:0032991 GO:0044424 GO:0044425 GO:0044444 GO:0044464 GO:0046903 GO:0048284 GO:0051179 GO:0051234 GO:0061024 GO:0061025 GO:0071840 GO:0090174 GO:0098796

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Longin Synaptobrevin

Protein Analysis

78

Amino Acids

9.1

Weight (kDa)

9.26

Isoelectric Point (pI)

36.35

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Synaptobrevin	PF00957	7 - 67	2.8e-18	Synaptobrevin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0015867)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G04750 AT1G04750 AT1G04750
prunus_persica	Prupe.2G303700_v2.0.a1 Prupe.2G303800_v2.0.a1
pyrus_communis	pycom420g00800
rosa_chinensis	RchiOBHm_Chr1g0355041 RchiOBHm_Chr4g0422051 RchiOBHm_Chr6g0285081
rosa_multiflora	Rmu_sc0026385.1_g000001
rosa_roxburghii	Rroxscaffold_4G00300740
rosa_samantha	Rh1AG256900 Rh5BG278700
rosa_wichuraiana	Rw1G022640 Rw2G012290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AgsI	TTSAA	1 cut(s)	100
AjuI	GAANNNNNNNTTGG	2 cut(s)	140, 172
AluBI	AGCT	1 cut(s)	130
AluI	AGCT	1 cut(s)	130
AoxI	GGCC	1 cut(s)	87
Asp700I	GAANNNNTTC	1 cut(s)	75
AspS9I	GGNCC	1 cut(s)	88
BfaI	CTAG	1 cut(s)	235
BmgT120I	GGNCC	1 cut(s)	88
BseMII	CTCAG	2 cut(s)	35, 98
BsgI	GTGCAG	1 cut(s)	211
BshFI	GGCC	1 cut(s)	89
BslFI	GGGAC	1 cut(s)	124
BsmFI	GGGAC	1 cut(s)	124
BsnI	GGCC	1 cut(s)	89
Bsp143I	GATC	2 cut(s)	31, 186
BspANI	GGCC	1 cut(s)	89
BspCNI	CTCAG	2 cut(s)	34, 97
BssMI	GATC	2 cut(s)	31, 186
Bst4CI	ACNGT	1 cut(s)	52
BstC8I	GCNNGC	1 cut(s)	14
BstDEI	CTNAG	2 cut(s)	21, 84
BstKTI	GATC	2 cut(s)	34, 189
BstMBI	GATC	2 cut(s)	31, 186
BstNSI	RCATGY	1 cut(s)	16
BsuRI	GGCC	1 cut(s)	89
Cac8I	GCNNGC	1 cut(s)	14
Cfr13I	GGNCC	1 cut(s)	88
CviAII	CATG	2 cut(s)	13, 145
CviJI	RGCY	4 cut(s)	26, 89, 130, 202
CviKI_1	RGCY	4 cut(s)	26, 89, 130, 202
DdeI	CTNAG	2 cut(s)	21, 84
DpnI	GATC	2 cut(s)	33, 188
DpnII	GATC	2 cut(s)	31, 186
FaeI	CATG	2 cut(s)	16, 148
FaiI	YATR	2 cut(s)	14, 146
FaqI	GGGAC	1 cut(s)	124
FatI	CATG	2 cut(s)	12, 144
FspBI	CTAG	1 cut(s)	235
HaeIII	GGCC	1 cut(s)	89
Hin1II	CATG	2 cut(s)	16, 148
HincII	GTYRAC	1 cut(s)	61
HindII	GTYRAC	1 cut(s)	61
HinfI	GANTC	1 cut(s)	171
Hpy166II	GTNNAC	1 cut(s)	61
Hpy188I	TCNGA	1 cut(s)	186
Hpy8I	GTNNAC	1 cut(s)	61
HpyAV	CCTTC	2 cut(s)	86, 117
HpyCH4III	ACNGT	1 cut(s)	52
HpyCH4V	TGCA	2 cut(s)	12, 228
HpyF3I	CTNAG	2 cut(s)	21, 84
Hsp92II	CATG	2 cut(s)	16, 148
Kzo9I	GATC	2 cut(s)	31, 186
LpnPI	CCDG	4 cut(s)	8, 71, 184, 200
MaeI	CTAG	1 cut(s)	235
MaeIII	GTNAC	1 cut(s)	177
MalI	GATC	2 cut(s)	33, 188
MboI	GATC	2 cut(s)	31, 186
MnlI	CCTC	1 cut(s)	29
MroXI	GAANNNNTTC	1 cut(s)	75
NdeII	GATC	2 cut(s)	31, 186
NlaIII	CATG	2 cut(s)	16, 148
NspI	RCATGY	1 cut(s)	16
PaeI	GCATGC	1 cut(s)	16
PdmI	GAANNNNTTC	1 cut(s)	75
PfeI	GAWTC	1 cut(s)	171
PspPI	GGNCC	1 cut(s)	88
Sau3AI	GATC	2 cut(s)	31, 186
Sau96I	GGNCC	1 cut(s)	88
SetI	ASST	2 cut(s)	48, 132
SphI	GCATGC	1 cut(s)	16
SspMI	CTAG	1 cut(s)	235
TaaI	ACNGT	1 cut(s)	52
TaqI	TCGA	1 cut(s)	34
TaqII	GACCGA	1 cut(s)	83
TfiI	GAWTC	1 cut(s)	171
TspDTI	ATGAA	1 cut(s)	161
XceI	RCATGY	1 cut(s)	16
XmnI	GAANNNNTTC	1 cut(s)	75
XspI	CTAG	1 cut(s)	235

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.