Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0026385.1

Orthogroup ID

OG0015867

Physical Location & Seq

Genomic Coordinates Reverse (-)

198 .. 1179

Gene Structure 982 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0026385.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 468 bp

atgattgcagttgaggctcttggtcgacaagttcctattgccttccttgagcgaatcaaggaggattttaccaatagatatggtggaggaaaagctgcaacggcagttgcaaatagtctgaacaaggaatttgggcccaagctgaaggagcatatgcaatattgtgtggatcaccccgaggagatcagcaaacttgctaaagtgaaagctcaggtctcagaagtcaaaggagttatgatggaaaatattgagaaggttcttgatcgtggggaaaagatagaacttctggtagacaaaacagagaaccttcgctcacaggcacaagatttcaggcagcagggaacccagatgaggaggaagatgtggttgcagaacatgaagatcaagctgatagttttgggaatcttaatcgccttgattctcatcattgttctatctgtttgcaaaggtttcaactgtggtggatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000149 GO:0003674 GO:0005484 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006810 GO:0006887 GO:0006906 GO:0006996 GO:0008150 GO:0009987 GO:0016020 GO:0016043 GO:0016050 GO:0016192 GO:0031201 GO:0032940 GO:0032991 GO:0044424 GO:0044425 GO:0044444 GO:0044464 GO:0046903 GO:0048284 GO:0051179 GO:0051234 GO:0061024 GO:0061025 GO:0071840 GO:0090174 GO:0098796

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Longin Synaptobrevin

Protein Analysis

155

Amino Acids

17.44

Weight (kDa)

9.3

Isoelectric Point (pI)

32.15

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015867)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G04750 AT1G04750 AT1G04750
prunus_persica	Prupe.2G303700_v2.0.a1 Prupe.2G303800_v2.0.a1
pyrus_communis	pycom420g00800
rosa_chinensis	RchiOBHm_Chr1g0355041 RchiOBHm_Chr4g0422051 RchiOBHm_Chr6g0285081
rosa_multiflora	Rmu_sc0026385.1_g000001
rosa_roxburghii	Rroxscaffold_4G00300740
rosa_samantha	Rh1AG256900 Rh5BG278700
rosa_wichuraiana	Rw1G022640 Rw2G012290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	25, 291
AclWI	GGATC	1 cut(s)	177
AcsI	RAATTY	1 cut(s)	128
AcuI	CTGAAG	1 cut(s)	164
AfiI	CCNNNNNNNGG	1 cut(s)	351
AgsI	TTSAA	1 cut(s)	454
AluBI	AGCT	4 cut(s)	95, 142, 209, 388
AluI	AGCT	4 cut(s)	95, 142, 209, 388
Alw26I	GTCTC	1 cut(s)	220
AlwI	GGATC	1 cut(s)	177
Ama87I	CYCGRG	1 cut(s)	176
AoxI	GGCC	1 cut(s)	134
ApaI	GGGCCC	1 cut(s)	138
ApeKI	GCWGC	2 cut(s)	95, 334
ApoI	RAATTY	1 cut(s)	128
AspS9I	GGNCC	2 cut(s)	134, 135
AsuHPI	GGTGA	1 cut(s)	164
AvaI	CYCGRG	1 cut(s)	176
BaeGI	GKGCMC	1 cut(s)	138
BanII	GRGCYC	1 cut(s)	138
BbvI	GCAGC	2 cut(s)	82, 346
BccI	CCATC	1 cut(s)	232
BceAI	ACGGC	1 cut(s)	117
BcoDI	GTCTC	1 cut(s)	220
BisI	GCNGC	2 cut(s)	96, 335
BlsI	GCNGC	2 cut(s)	97, 336
BmeT110I	CYCGRG	1 cut(s)	176
BmgT120I	GGNCC	2 cut(s)	134, 135
BmiI	GGNNCC	2 cut(s)	136, 343
Bpu10I	CCTNAGC	1 cut(s)	210
BpuEI	CTTGAG	1 cut(s)	68
BsaBI	GATNNNNATC	1 cut(s)	422
BsaI	GGTCTC	1 cut(s)	220
BsaJI	CCNNGG	1 cut(s)	177
Bsc4I	CCNNNNNNNGG	1 cut(s)	351
Bse8I	GATNNNNATC	1 cut(s)	422
BseDI	CCNNGG	1 cut(s)	177
BseJI	GATNNNNATC	1 cut(s)	422
BseLI	CCNNNNNNNGG	1 cut(s)	351
BseMII	CTCAG	2 cut(s)	224, 231
BseRI	GAGGAG	2 cut(s)	194, 367
BseSI	GKGCMC	1 cut(s)	138
BseXI	GCAGC	2 cut(s)	82, 346
BshFI	GGCC	1 cut(s)	136
BsiHKCI	CYCGRG	1 cut(s)	176
BslI	CCNNNNNNNGG	1 cut(s)	351
BsmAI	GTCTC	1 cut(s)	220
BsnI	GGCC	1 cut(s)	136
Bso31I	GGTCTC	1 cut(s)	220
BsoBI	CYCGRG	1 cut(s)	176
Bsp120I	GGGCCC	1 cut(s)	134
Bsp1286I	GDGCHC	1 cut(s)	138
Bsp143I	GATC	4 cut(s)	169, 183, 262, 381
BspANI	GGCC	1 cut(s)	136
BspCNI	CTCAG	2 cut(s)	223, 230
BspLI	GGNNCC	2 cut(s)	136, 343
BspPI	GGATC	1 cut(s)	177
BspTNI	GGTCTC	1 cut(s)	220
BssECI	CCNNGG	1 cut(s)	177
BssMI	GATC	4 cut(s)	169, 183, 262, 381
Bst4CI	ACNGT	1 cut(s)	458
BstDEI	CTNAG	2 cut(s)	210, 217
BstKTI	GATC	4 cut(s)	172, 186, 265, 384
BstMAI	GTCTC	1 cut(s)	220
BstMBI	GATC	4 cut(s)	169, 183, 262, 381
BstMWI	GCNNNNNNNGC	3 cut(s)	14, 101, 148
BstSLI	GKGCMC	1 cut(s)	138
BstV1I	GCAGC	2 cut(s)	82, 346
BsuRI	GGCC	1 cut(s)	136
Cfr13I	GGNCC	2 cut(s)	134, 135
CspCI	CAANNNNNGTGG	1 cut(s)	442
CviAII	CATG	1 cut(s)	376
CviJI	RGCY	6 cut(s)	17, 95, 136, 142, 209, 388
CviKI_1	RGCY	6 cut(s)	17, 95, 136, 142, 209, 388
DdeI	CTNAG	2 cut(s)	210, 217
DpnI	GATC	4 cut(s)	171, 185, 264, 383
DpnII	GATC	4 cut(s)	169, 183, 262, 381
Eco24I	GRGCYC	1 cut(s)	138
Eco31I	GGTCTC	1 cut(s)	220
Eco57I	CTGAAG	1 cut(s)	164
Eco88I	CYCGRG	1 cut(s)	176
EcoT38I	GRGCYC	1 cut(s)	138
FaeI	CATG	1 cut(s)	379
FaiI	YATR	5 cut(s)	81, 153, 155, 236, 377
FatI	CATG	1 cut(s)	375
FauNDI	CATATG	1 cut(s)	153
FblI	GTMKAC	2 cut(s)	25, 291
Fnu4HI	GCNGC	2 cut(s)	96, 335
FriOI	GRGCYC	1 cut(s)	138
Fsp4HI	GCNGC	2 cut(s)	96, 335
GluI	GCNGC	2 cut(s)	96, 335
HaeIII	GGCC	1 cut(s)	136
Hin1II	CATG	1 cut(s)	379
HincII	GTYRAC	1 cut(s)	26
HindII	GTYRAC	1 cut(s)	26
HinfI	GANTC	3 cut(s)	54, 402, 418
HphI	GGTGA	1 cut(s)	164
Hpy166II	GTNNAC	2 cut(s)	26, 292
Hpy188I	TCNGA	2 cut(s)	120, 220
Hpy188III	TCNNGA	1 cut(s)	260
Hpy8I	GTNNAC	2 cut(s)	26, 292
HpyAV	CCTTC	4 cut(s)	52, 139, 247, 317
HpyCH4III	ACNGT	1 cut(s)	458
HpyCH4V	TGCA	6 cut(s)	8, 98, 110, 157, 370, 444
HpyF10VI	GCNNNNNNNGC	3 cut(s)	14, 101, 148
HpyF3I	CTNAG	2 cut(s)	210, 217
Hsp92II	CATG	1 cut(s)	379
Kzo9I	GATC	4 cut(s)	169, 183, 262, 381
LmnI	GCTCC	1 cut(s)	148
LpnPI	CCDG	6 cut(s)	197, 272, 302, 316, 323, 359
Lsp1109I	GCAGC	2 cut(s)	82, 346
MalI	GATC	4 cut(s)	171, 185, 264, 383
MboI	GATC	4 cut(s)	169, 183, 262, 381
MboII	GAAGA	2 cut(s)	370, 391
MhlI	GDGCHC	1 cut(s)	138
MluCI	AATT	1 cut(s)	128
MnlI	CCTC	6 cut(s)	7, 55, 80, 172, 345, 348
MseI	TTAA	1 cut(s)	407
MwoI	GCNNNNNNNGC	3 cut(s)	14, 101, 148
NdeI	CATATG	1 cut(s)	153
NdeII	GATC	4 cut(s)	169, 183, 262, 381
NlaIII	CATG	1 cut(s)	379
NlaIV	GGNNCC	2 cut(s)	136, 343
PfeI	GAWTC	3 cut(s)	54, 402, 418
PkrI	GCNGC	2 cut(s)	97, 336
PspN4I	GGNNCC	2 cut(s)	136, 343
PspOMI	GGGCCC	1 cut(s)	134
PspPI	GGNCC	2 cut(s)	134, 135
SalI	GTCGAC	1 cut(s)	24
SaqAI	TTAA	1 cut(s)	407
SatI	GCNGC	2 cut(s)	96, 335
Sau3AI	GATC	4 cut(s)	169, 183, 262, 381
Sau96I	GGNCC	2 cut(s)	134, 135
SduI	GDGCHC	1 cut(s)	138
SetI	ASST	8 cut(s)	97, 144, 211, 216, 258, 309, 390, 451
SmlI	CTYRAG	1 cut(s)	47
SmoI	CTYRAG	1 cut(s)	47
Sse9I	AATT	1 cut(s)	128
SspI	AATATT	2 cut(s)	161, 247
TaaI	ACNGT	1 cut(s)	458
TaqI	TCGA	1 cut(s)	25
TasI	AATT	1 cut(s)	128
TfiI	GAWTC	3 cut(s)	54, 402, 418
Tru1I	TTAA	1 cut(s)	407
Tru9I	TTAA	1 cut(s)	407
TseI	GCWGC	2 cut(s)	95, 334
TspDTI	ATGAA	1 cut(s)	392
XapI	RAATTY	1 cut(s)	128
XmiI	GTMKAC	2 cut(s)	25, 291

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.