Rh1AG256900

Belongs to the synaptobrevin family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
OG0015867
Physical Location & Seq
Reverse (-)
47492167 .. 47493024
858 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1AG256900.1

Sequence Viewer

Length: 234 bp
ATGAGGCCATCAGGTAGAGATGTTAAAGTAAGAGTCATGCTCCTTCGCGAAGATTCTTCTTACCCTTTTCTGCATTTCCTGCCTTTGAATGCCACAGCGTACTGCGTAGTTGCAGTTGAGGCTCTTGGTCGACAAGTTCCTATTGCCTTCCTTGAGCCAATCAAGGAGGATTTTACCAAGAGATATGGTGTAGGAAAAGCTGCAACGGCAGCTGAACAAGGAATTTGGGTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Longin Synaptobrevin

Protein Analysis

77

Amino Acids

8.59

Weight (kDa)

8.93

Isoelectric Point (pI)

33.89

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Longin PF13774 23 - 70 1.6e-08 Regulated-SNARE-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015867)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G04750 AT1G04750 AT1G04750
prunus_persica Prupe.2G303700_v2.0.a1 Prupe.2G303800_v2.0.a1
pyrus_communis pycom420g00800
rosa_chinensis RchiOBHm_Chr1g0355041 RchiOBHm_Chr4g0422051 RchiOBHm_Chr6g0285081
rosa_multiflora Rmu_sc0026385.1_g000001
rosa_roxburghii Rroxscaffold_4G00300740
rosa_samantha Rh1AG256900 Rh5BG278700
rosa_wichuraiana Rw1G022640 Rw2G012290

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 130
AccII CGCG 1 cut(s) 48
AcsI RAATTY 1 cut(s) 222
AfaI GTAC 1 cut(s) 101
AgsI TTSAA 1 cut(s) 88
AluBI AGCT 2 cut(s) 200, 212
AluI AGCT 2 cut(s) 200, 212
AoxI GGCC 1 cut(s) 5
ApeKI GCWGC 2 cut(s) 200, 209
ApoI RAATTY 1 cut(s) 222
BbvI GCAGC 2 cut(s) 187, 221
BccI CCATC 1 cut(s) 16
BceAI ACGGC 1 cut(s) 222
BisI GCNGC 2 cut(s) 201, 210
BlsI GCNGC 2 cut(s) 202, 211
BplI GAGNNNNNCTC 2 cut(s) 24, 56
BpuEI CTTGAG 1 cut(s) 173
BseXI GCAGC 2 cut(s) 187, 221
Bsh1236I CGCG 1 cut(s) 48
BshFI GGCC 1 cut(s) 7
BsmI GAATGC 1 cut(s) 94
BsnI GGCC 1 cut(s) 7
Bsp68I TCGCGA 1 cut(s) 48
BspANI GGCC 1 cut(s) 7
BspFNI CGCG 1 cut(s) 48
BstAPI GCANNNNNTGC 1 cut(s) 79
BstFNI CGCG 1 cut(s) 48
BstMWI GCNNNNNNNGC 4 cut(s) 79, 119, 206, 209
BstUI CGCG 1 cut(s) 48
BstV1I GCAGC 2 cut(s) 187, 221
BsuRI GGCC 1 cut(s) 7
BtuMI TCGCGA 1 cut(s) 48
Csp6I GTAC 1 cut(s) 100
CviAII CATG 1 cut(s) 37
CviJI RGCY 5 cut(s) 7, 122, 157, 200, 212
CviKI_1 RGCY 5 cut(s) 7, 122, 157, 200, 212
CviQI GTAC 1 cut(s) 100
FaeI CATG 1 cut(s) 40
FaiI YATR 2 cut(s) 38, 186
FatI CATG 1 cut(s) 36
FblI GTMKAC 1 cut(s) 130
Fnu4HI GCNGC 2 cut(s) 201, 210
Fsp4HI GCNGC 2 cut(s) 201, 210
GluI GCNGC 2 cut(s) 201, 210
HaeIII GGCC 1 cut(s) 7
Hin1II CATG 1 cut(s) 40
HincII GTYRAC 1 cut(s) 131
HindII GTYRAC 1 cut(s) 131
HinfI GANTC 2 cut(s) 33, 53
Hpy166II GTNNAC 1 cut(s) 131
Hpy188III TCNNGA 1 cut(s) 47
Hpy8I GTNNAC 1 cut(s) 131
HpyAV CCTTC 2 cut(s) 53, 157
HpyCH4V TGCA 3 cut(s) 73, 113, 203
HpyF10VI GCNNNNNNNGC 4 cut(s) 79, 119, 206, 209
Hsp92II CATG 1 cut(s) 40
LmnI GCTCC 1 cut(s) 45
LpnPI CCDG 1 cut(s) 92
Lsp1109I GCAGC 2 cut(s) 187, 221
MboII GAAGA 2 cut(s) 48, 62
MluCI AATT 1 cut(s) 222
MlyI GAGTC 1 cut(s) 42
MnlI CCTC 2 cut(s) 112, 160
MseI TTAA 1 cut(s) 24
MspA1I CMGCKG 1 cut(s) 212
Mva1269I GAATGC 1 cut(s) 94
MvnI CGCG 1 cut(s) 48
MwoI GCNNNNNNNGC 4 cut(s) 79, 119, 206, 209
NlaIII CATG 1 cut(s) 40
NruI TCGCGA 1 cut(s) 48
PctI GAATGC 1 cut(s) 94
PfeI GAWTC 1 cut(s) 53
PkrI GCNGC 2 cut(s) 202, 211
PleI GAGTC 1 cut(s) 41
PpsI GAGTC 1 cut(s) 41
PvuII CAGCTG 1 cut(s) 212
RruI TCGCGA 1 cut(s) 48
RsaI GTAC 1 cut(s) 101
RsaNI GTAC 1 cut(s) 100
SalI GTCGAC 1 cut(s) 129
SaqAI TTAA 1 cut(s) 24
SatI GCNGC 2 cut(s) 201, 210
SchI GAGTC 1 cut(s) 42
SetI ASST 3 cut(s) 16, 202, 214
SmlI CTYRAG 1 cut(s) 152
SmoI CTYRAG 1 cut(s) 152
Sse9I AATT 1 cut(s) 222
TaqI TCGA 1 cut(s) 130
TasI AATT 1 cut(s) 222
TfiI GAWTC 1 cut(s) 53
Tru1I TTAA 1 cut(s) 24
Tru9I TTAA 1 cut(s) 24
TseI GCWGC 2 cut(s) 200, 209
XapI RAATTY 1 cut(s) 222
XmiI GTMKAC 1 cut(s) 130
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.