Rw2G012290

Belongs to the synaptobrevin family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr2
OG0015867
Physical Location & Seq
Forward (+)
12711042 .. 12712875
1834 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw2G012290.1

Sequence Viewer

Length: 567 bp
ATGAAGTCTTTTTCAAGACTTGTGTTTCCCCTTTTGTACTTCCACAACGGAGGAGTCAAGGAGTTCCTTGCTACAATAAAGTTGTATGTGTTTATAGCGAGGTTTGTTATTTTTTGTTGGTATTGCTATATTTATCTTTTCTTTCCTTTTTTTGAACTTGGAACTGATTCAGCTCATGATGAGAGTCCATCCGAAAACCGAATCAAGAAGGATGAGATCAGTGAGGTGCCAGATTTATATCTTGGTGCAAGCATTCATCTCTCAAGATATCTTAATAATGTTAAGGATCCCAATTCTATCCAGGTTCATTCCCTTTCATATGCTTTTTTTAGTGTCAAACCAAAGCTGAAGGAGCACATGAAGTACTGTGTGGATCATCTTGAAGAGGTCAACAAGCTTGCAAAATTGAAGGCTCACGTTACTGAGGTCAAGGGTGTTATGATGGAAAATATTGAGAAGGTTCTTGACCGTGGTGAGAAGATTGAGCTATTGGTGGATAAGACTGATAACCCAGCTAAAGATTTCAAGCAACAAGGAACAAAAATGAGAAGGAAGATGTGGTTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04130 map04130
Pfam Domains
Protein Families
Longin Synaptobrevin

Protein Analysis

188

Amino Acids

22.13

Weight (kDa)

8.81

Isoelectric Point (pI)

33.81

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Synaptobrevin PF00957 132 - 188 3.6e-17 Synaptobrevin
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015867)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G04750 AT1G04750 AT1G04750
prunus_persica Prupe.2G303700_v2.0.a1 Prupe.2G303800_v2.0.a1
pyrus_communis pycom420g00800
rosa_chinensis RchiOBHm_Chr1g0355041 RchiOBHm_Chr4g0422051 RchiOBHm_Chr6g0285081
rosa_multiflora Rmu_sc0026385.1_g000001
rosa_roxburghii Rroxscaffold_4G00300740
rosa_samantha Rh1AG256900 Rh5BG278700
rosa_wichuraiana Rw1G022640 Rw2G012290

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 226
AclWI GGATC 3 cut(s) 281, 294, 381
AcuI CTGAAG 1 cut(s) 368
AfaI GTAC 2 cut(s) 38, 365
AgsI TTSAA 5 cut(s) 15, 155, 383, 409, 526
AjnI CCWGG 1 cut(s) 300
AluBI AGCT 5 cut(s) 173, 346, 397, 487, 515
AluI AGCT 5 cut(s) 173, 346, 397, 487, 515
Alw21I GWGCWC 1 cut(s) 357
AlwI GGATC 3 cut(s) 281, 294, 381
Asp700I GAANNNNTTC 1 cut(s) 166
AsuHPI GGTGA 1 cut(s) 485
BamHI GGATCC 1 cut(s) 286
BanI GGYRCC 1 cut(s) 226
Bbv12I GWGCWC 1 cut(s) 357
BccI CCATC 2 cut(s) 196, 436
BciT130I CCWGG 1 cut(s) 302
BmcAI AGTACT 1 cut(s) 365
Bme1390I CCNGG 1 cut(s) 302
BmiI GGNNCC 2 cut(s) 228, 288
BmrFI CCNGG 1 cut(s) 302
BpuEI CTTGAG 1 cut(s) 247
BsaBI GATNNNNATC 1 cut(s) 237
BsaJI CCNNGG 1 cut(s) 469
Bse8I GATNNNNATC 1 cut(s) 237
BseBI CCWGG 1 cut(s) 302
BseDI CCNNGG 1 cut(s) 469
BseGI GGATG 2 cut(s) 188, 217
BseJI GATNNNNATC 1 cut(s) 237
BseMII CTCAG 1 cut(s) 414
BseRI GAGGAG 1 cut(s) 66
BseYI CCCAGC 1 cut(s) 511
BshNI GGYRCC 1 cut(s) 226
BsiHKAI GWGCWC 1 cut(s) 357
BsmI GAATGC 1 cut(s) 252
Bsp1286I GDGCHC 1 cut(s) 357
Bsp143I GATC 3 cut(s) 216, 286, 373
BspCNI CTCAG 1 cut(s) 415
BspHI TCATGA 1 cut(s) 175
BspLI GGNNCC 2 cut(s) 228, 288
BspPI GGATC 3 cut(s) 281, 294, 381
BspT107I GGYRCC 1 cut(s) 226
BssECI CCNNGG 1 cut(s) 469
BssMI GATC 3 cut(s) 216, 286, 373
Bst2UI CCWGG 1 cut(s) 302
Bst4CI ACNGT 2 cut(s) 368, 470
Bst6I CTCTTC 1 cut(s) 378
BstC8I GCNNGC 2 cut(s) 250, 399
BstDEI CTNAG 1 cut(s) 423
BstDSI CCRYGG 1 cut(s) 469
BstF5I GGATG 2 cut(s) 188, 217
BstKTI GATC 3 cut(s) 219, 289, 376
BstMBI GATC 3 cut(s) 216, 286, 373
BstMWI GCNNNNNNNGC 1 cut(s) 352
BstNI CCWGG 1 cut(s) 302
BstSCI CCNGG 1 cut(s) 300
BstX2I RGATCY 1 cut(s) 286
BstYI RGATCY 1 cut(s) 286
BtgI CCRYGG 1 cut(s) 469
BtsCI GGATG 2 cut(s) 188, 217
BtsIMutI CAGTG 1 cut(s) 226
Cac8I GCNNGC 2 cut(s) 250, 399
CciI TCATGA 1 cut(s) 175
Csp6I GTAC 2 cut(s) 37, 364
CviAII CATG 2 cut(s) 176, 358
CviJI RGCY 6 cut(s) 173, 346, 397, 413, 487, 515
CviKI_1 RGCY 6 cut(s) 173, 346, 397, 413, 487, 515
CviQI GTAC 2 cut(s) 37, 364
DdeI CTNAG 1 cut(s) 423
DpnI GATC 3 cut(s) 218, 288, 375
DpnII GATC 3 cut(s) 216, 286, 373
Eam1104I CTCTTC 1 cut(s) 378
EarI CTCTTC 1 cut(s) 378
Eco32I GATATC 1 cut(s) 269
Eco57I CTGAAG 1 cut(s) 368
EcoRII CCWGG 1 cut(s) 300
EcoRV GATATC 1 cut(s) 269
FaeI CATG 2 cut(s) 179, 361
FaiI YATR 9 cut(s) 87, 95, 129, 177, 238, 319, 321, 359, 440
FatI CATG 2 cut(s) 175, 357
FauNDI CATATG 1 cut(s) 319
FokI GGATG 2 cut(s) 175, 224
GsaI CCCAGC 1 cut(s) 515
Hin1II CATG 2 cut(s) 179, 361
HincII GTYRAC 1 cut(s) 391
HindII GTYRAC 1 cut(s) 391
HindIII AAGCTT 1 cut(s) 395
HinfI GANTC 4 cut(s) 54, 167, 184, 201
HphI GGTGA 1 cut(s) 485
Hpy166II GTNNAC 1 cut(s) 391
Hpy188I TCNGA 1 cut(s) 193
Hpy188III TCNNGA 6 cut(s) 15, 176, 205, 264, 380, 464
Hpy8I GTNNAC 1 cut(s) 391
HpyAV CCTTC 5 cut(s) 202, 343, 403, 451, 543
HpyCH4III ACNGT 2 cut(s) 368, 470
HpyCH4IV ACGT 1 cut(s) 417
HpyCH4V TGCA 2 cut(s) 248, 401
HpyF10VI GCNNNNNNNGC 1 cut(s) 352
HpyF3I CTNAG 1 cut(s) 423
HpySE526I ACGT 1 cut(s) 417
Hsp92II CATG 2 cut(s) 179, 361
Kzo9I GATC 3 cut(s) 216, 286, 373
LmnI GCTCC 1 cut(s) 352
LpnPI CCDG 4 cut(s) 243, 287, 314, 525
MaeII ACGT 1 cut(s) 417
MaeIII GTNAC 1 cut(s) 418
MalI GATC 3 cut(s) 218, 288, 375
MboI GATC 3 cut(s) 216, 286, 373
MboII GAAGA 3 cut(s) 395, 490, 565
MflI RGATCY 1 cut(s) 286
MhlI GDGCHC 1 cut(s) 357
MluCI AATT 2 cut(s) 292, 404
MlyI GAGTC 2 cut(s) 63, 193
MnlI CCTC 5 cut(s) 44, 93, 217, 379, 418
MroXI GAANNNNTTC 1 cut(s) 166
MseI TTAA 2 cut(s) 273, 282
MspR9I CCNGG 1 cut(s) 302
Mva1269I GAATGC 1 cut(s) 252
MvaI CCWGG 1 cut(s) 302
MwoI GCNNNNNNNGC 1 cut(s) 352
NdeI CATATG 1 cut(s) 319
NdeII GATC 3 cut(s) 216, 286, 373
NlaIII CATG 2 cut(s) 179, 361
NlaIV GGNNCC 2 cut(s) 228, 288
PagI TCATGA 1 cut(s) 175
PctI GAATGC 1 cut(s) 252
PdmI GAANNNNTTC 1 cut(s) 166
PfeI GAWTC 2 cut(s) 167, 201
PleI GAGTC 2 cut(s) 62, 192
PpsI GAGTC 2 cut(s) 62, 192
Psp6I CCWGG 1 cut(s) 300
PspFI CCCAGC 1 cut(s) 511
PspGI CCWGG 1 cut(s) 300
PspN4I GGNNCC 2 cut(s) 228, 288
PsuI RGATCY 1 cut(s) 286
RsaI GTAC 2 cut(s) 38, 365
RsaNI GTAC 2 cut(s) 37, 364
SaqAI TTAA 2 cut(s) 273, 282
Sau3AI GATC 3 cut(s) 216, 286, 373
ScaI AGTACT 1 cut(s) 365
SchI GAGTC 2 cut(s) 63, 193
ScrFI CCNGG 1 cut(s) 302
SduI GDGCHC 1 cut(s) 357
SmlI CTYRAG 1 cut(s) 262
SmoI CTYRAG 1 cut(s) 262
Sse9I AATT 2 cut(s) 292, 404
SspI AATATT 1 cut(s) 451
StyD4I CCNGG 1 cut(s) 300
TaaI ACNGT 2 cut(s) 368, 470
TaiI ACGT 1 cut(s) 420
TasI AATT 2 cut(s) 292, 404
TatI WGTACW 2 cut(s) 36, 363
TfiI GAWTC 2 cut(s) 167, 201
Tru1I TTAA 2 cut(s) 273, 282
Tru9I TTAA 2 cut(s) 273, 282
TscAI CASTG 1 cut(s) 226
TspDTI ATGAA 5 cut(s) 17, 245, 296, 306, 374
TspGWI ACGGA 1 cut(s) 63
TspRI CASTG 1 cut(s) 226
XmnI GAANNNNTTC 1 cut(s) 166
ZrmI AGTACT 1 cut(s) 365
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.