Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0015867

Physical Location & Seq

Genomic Coordinates Forward (+)

21083650 .. 21086205

Gene Structure 2556 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00300740.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 552 bp

ATGAAAATCACGGTTGAGATAGTCTGCAACACCAAATGCACTGCAATTTTAGTTAGTAAACCTGAGGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAGGTTAGTTACCTAGTGATTTCGCGCGAACCTTTGAATGCCACAGCGTACTGCGTAGTTGCAGTTGAGGCTCTTGGTCGACAAGTTCCTATTGCCTTCCTTGAGCCAATCAAGGAGGATTTTACCAAGAGATATGGTGTAGGAAAAGCTGCAACGGCAGCTGAACAAGGAATTTGGGTAACAGTTCTGAAGGAGCATGTGCAATATTGTGTGGATCATCCCGATCGAGGAGATCACCAAACTTTTCTTGATCGTGGGGAAAAGATAGAACTTCTGGTGGACAAAACAAGGAACGCCTTCGCTCACAGAGATCGACTCTACTCATTGAGGCATATTCCTTATGTTCCATTTGATTTAACTCCAGGTTGTATTGCTCTGAGGTTTCAAGGTCTAATACATGGTTTCATGTGTGATTTAGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000149 GO:0003674 GO:0005484 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005886 GO:0006810 GO:0006887 GO:0006906 GO:0006996 GO:0008150 GO:0009507 GO:0009536 GO:0009987 GO:0012505 GO:0016020 GO:0016043 GO:0016050 GO:0016192 GO:0031201 GO:0031410 GO:0031982 GO:0032940 GO:0032991 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044425 GO:0044444 GO:0044464 GO:0046903 GO:0048284 GO:0051179 GO:0051234 GO:0061024 GO:0061025 GO:0071840 GO:0071944 GO:0090174 GO:0097708 GO:0098796

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Longin Synaptobrevin

Protein Analysis

183

Amino Acids

21.0

Weight (kDa)

4.54

Isoelectric Point (pI)

61.63

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Longin	PF13774	47 - 96	6.9e-07	Regulated-SNARE-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0015867)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G04750 AT1G04750 AT1G04750
prunus_persica	Prupe.2G303700_v2.0.a1 Prupe.2G303800_v2.0.a1
pyrus_communis	pycom420g00800
rosa_chinensis	RchiOBHm_Chr1g0355041 RchiOBHm_Chr4g0422051 RchiOBHm_Chr6g0285081
rosa_multiflora	Rmu_sc0026385.1_g000001
rosa_roxburghii	Rroxscaffold_4G00300740
rosa_samantha	Rh1AG256900 Rh5BG278700
rosa_wichuraiana	Rw1G022640 Rw2G012290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	208
AccII	CGCG	2 cut(s)	154, 156
AclWI	GGATC	1 cut(s)	351
AcsI	RAATTY	1 cut(s)	300
AcuI	CTGAAG	1 cut(s)	338
AfaI	GTAC	1 cut(s)	179
AfiI	CCNNNNNNNGG	1 cut(s)	356
AgsI	TTSAA	2 cut(s)	166, 515
AjnI	CCWGG	1 cut(s)	490
AluBI	AGCT	2 cut(s)	278, 290
AluI	AGCT	2 cut(s)	278, 290
AlwI	GGATC	1 cut(s)	351
ApeKI	GCWGC	2 cut(s)	278, 287
ApoI	RAATTY	1 cut(s)	300
Asp700I	GAANNNNTTC	1 cut(s)	425
AspLEI	GCGC	1 cut(s)	156
AsuHPI	GGTGA	1 cut(s)	356
AxyI	CCTNAGG	1 cut(s)	63
BbvI	GCAGC	2 cut(s)	265, 299
BceAI	ACGGC	1 cut(s)	300
BciT130I	CCWGG	1 cut(s)	492
BfaI	CTAG	1 cut(s)	143
BisI	GCNGC	2 cut(s)	279, 288
BlsI	GCNGC	2 cut(s)	280, 289
Bme1390I	CCNGG	1 cut(s)	492
BmrFI	CCNGG	1 cut(s)	492
BplI	GAGNNNNNCTC	2 cut(s)	429, 461
BpmI	CTGGAG	1 cut(s)	474
BpuEI	CTTGAG	1 cut(s)	251
Bsc4I	CCNNNNNNNGG	1 cut(s)	356
Bse21I	CCTNAGG	1 cut(s)	63
BseBI	CCWGG	1 cut(s)	492
BseGI	GGATG	1 cut(s)	346
BseLI	CCNNNNNNNGG	1 cut(s)	356
BseMII	CTCAG	2 cut(s)	54, 497
BseRI	GAGGAG	1 cut(s)	372
BseXI	GCAGC	2 cut(s)	265, 299
Bsh1236I	CGCG	2 cut(s)	154, 156
Bsh1285I	CGRYCG	1 cut(s)	355
BsiEI	CGRYCG	1 cut(s)	355
BslI	CCNNNNNNNGG	1 cut(s)	356
BsmI	GAATGC	1 cut(s)	172
Bsp143I	GATC	5 cut(s)	343, 352, 361, 379, 439
BspCNI	CTCAG	2 cut(s)	55, 498
BspFNI	CGCG	2 cut(s)	154, 156
BspPI	GGATC	1 cut(s)	351
BssMI	GATC	5 cut(s)	343, 352, 361, 379, 439
Bst2UI	CCWGG	1 cut(s)	492
Bst4CI	ACNGT	2 cut(s)	13, 313
Bst6I	CTCTTC	1 cut(s)	123
BstDEI	CTNAG	2 cut(s)	63, 506
BstF5I	GGATG	1 cut(s)	346
BstFNI	CGCG	2 cut(s)	154, 156
BstHHI	GCGC	1 cut(s)	156
BstKTI	GATC	5 cut(s)	346, 355, 364, 382, 442
BstMBI	GATC	5 cut(s)	343, 352, 361, 379, 439
BstMCI	CGRYCG	1 cut(s)	355
BstMWI	GCNNNNNNNGC	3 cut(s)	197, 284, 287
BstNI	CCWGG	1 cut(s)	492
BstNSI	RCATGY	1 cut(s)	329
BstSCI	CCNGG	1 cut(s)	490
BstUI	CGCG	2 cut(s)	154, 156
BstV1I	GCAGC	2 cut(s)	265, 299
Bsu36I	CCTNAGG	1 cut(s)	63
BtsCI	GGATG	1 cut(s)	346
BtsI	GCAGTG	1 cut(s)	39
BtsIMutI	CAGTG	1 cut(s)	39
CfoI	GCGC	1 cut(s)	156
Csp6I	GTAC	1 cut(s)	178
CviAII	CATG	3 cut(s)	326, 527, 535
CviJI	RGCY	4 cut(s)	200, 235, 278, 290
CviKI_1	RGCY	4 cut(s)	200, 235, 278, 290
CviQI	GTAC	1 cut(s)	178
DdeI	CTNAG	2 cut(s)	63, 506
DpnI	GATC	5 cut(s)	345, 354, 363, 381, 441
DpnII	GATC	5 cut(s)	343, 352, 361, 379, 439
Eam1104I	CTCTTC	1 cut(s)	123
EarI	CTCTTC	1 cut(s)	123
Eco57I	CTGAAG	1 cut(s)	338
Eco81I	CCTNAGG	1 cut(s)	63
EcoRII	CCWGG	1 cut(s)	490
FaeI	CATG	3 cut(s)	329, 530, 538
FaiI	YATR	6 cut(s)	264, 327, 462, 471, 528, 536
FatI	CATG	3 cut(s)	325, 526, 534
FblI	GTMKAC	1 cut(s)	208
Fnu4HI	GCNGC	2 cut(s)	279, 288
FokI	GGATG	1 cut(s)	333
Fsp4HI	GCNGC	2 cut(s)	279, 288
FspBI	CTAG	1 cut(s)	143
GlaI	GCGC	1 cut(s)	155
GluI	GCNGC	2 cut(s)	279, 288
GsuI	CTGGAG	1 cut(s)	474
HhaI	GCGC	1 cut(s)	156
Hin1II	CATG	3 cut(s)	329, 530, 538
Hin6I	GCGC	1 cut(s)	154
HinP1I	GCGC	1 cut(s)	154
HincII	GTYRAC	1 cut(s)	209
HindII	GTYRAC	1 cut(s)	209
HinfI	GANTC	1 cut(s)	444
HphI	GGTGA	1 cut(s)	356
Hpy166II	GTNNAC	3 cut(s)	59, 209, 409
Hpy188I	TCNGA	2 cut(s)	318, 507
Hpy188III	TCNNGA	2 cut(s)	350, 377
Hpy8I	GTNNAC	3 cut(s)	59, 209, 409
HpyAV	CCTTC	3 cut(s)	235, 313, 436
HpyCH4III	ACNGT	2 cut(s)	13, 313
HpyCH4V	TGCA	6 cut(s)	27, 39, 44, 191, 281, 331
HpyF10VI	GCNNNNNNNGC	3 cut(s)	197, 284, 287
HpyF3I	CTNAG	2 cut(s)	63, 506
Hsp92II	CATG	3 cut(s)	329, 530, 538
HspAI	GCGC	1 cut(s)	154
Kzo9I	GATC	5 cut(s)	343, 352, 361, 379, 439
LmnI	GCTCC	1 cut(s)	322
LpnPI	CCDG	4 cut(s)	75, 389, 477, 504
Lsp1109I	GCAGC	2 cut(s)	265, 299
MaeI	CTAG	1 cut(s)	143
MaeIII	GTNAC	2 cut(s)	137, 307
MalI	GATC	5 cut(s)	345, 354, 363, 381, 441
MboI	GATC	5 cut(s)	343, 352, 361, 379, 439
MluCI	AATT	2 cut(s)	45, 300
MlyI	GAGTC	1 cut(s)	438
MnlI	CCTC	7 cut(s)	58, 124, 190, 238, 350, 450, 501
MroXI	GAANNNNTTC	1 cut(s)	425
MseI	TTAA	1 cut(s)	485
MspA1I	CMGCKG	1 cut(s)	290
MspR9I	CCNGG	1 cut(s)	492
Mva1269I	GAATGC	1 cut(s)	172
MvaI	CCWGG	1 cut(s)	492
MvnI	CGCG	2 cut(s)	154, 156
MwoI	GCNNNNNNNGC	3 cut(s)	197, 284, 287
NdeII	GATC	5 cut(s)	343, 352, 361, 379, 439
NlaIII	CATG	3 cut(s)	329, 530, 538
NspI	RCATGY	1 cut(s)	329
PctI	GAATGC	1 cut(s)	172
PdmI	GAANNNNTTC	1 cut(s)	425
PkrI	GCNGC	2 cut(s)	280, 289
Ple19I	CGATCG	1 cut(s)	355
PleI	GAGTC	1 cut(s)	438
PpsI	GAGTC	1 cut(s)	438
Psp6I	CCWGG	1 cut(s)	490
PspGI	CCWGG	1 cut(s)	490
PvuI	CGATCG	1 cut(s)	355
PvuII	CAGCTG	1 cut(s)	290
RsaI	GTAC	1 cut(s)	179
RsaNI	GTAC	1 cut(s)	178
SalI	GTCGAC	1 cut(s)	207
SaqAI	TTAA	1 cut(s)	485
SatI	GCNGC	2 cut(s)	279, 288
Sau3AI	GATC	5 cut(s)	343, 352, 361, 379, 439
SchI	GAGTC	1 cut(s)	438
ScrFI	CCNGG	1 cut(s)	492
SetI	ASST	9 cut(s)	64, 135, 144, 163, 280, 292, 496, 512, 520
SmlI	CTYRAG	1 cut(s)	230
SmoI	CTYRAG	1 cut(s)	230
Sse9I	AATT	2 cut(s)	45, 300
SspI	AATATT	1 cut(s)	335
SspMI	CTAG	1 cut(s)	143
StyD4I	CCNGG	1 cut(s)	490
TaaI	ACNGT	2 cut(s)	13, 313
TaqI	TCGA	3 cut(s)	208, 355, 442
TasI	AATT	2 cut(s)	45, 300
Tru1I	TTAA	1 cut(s)	485
Tru9I	TTAA	1 cut(s)	485
TscAI	CASTG	1 cut(s)	46
TseI	GCWGC	2 cut(s)	278, 287
TspDTI	ATGAA	2 cut(s)	17, 523
TspRI	CASTG	1 cut(s)	46
XapI	RAATTY	1 cut(s)	300
XceI	RCATGY	1 cut(s)	329
XmiI	GTMKAC	1 cut(s)	208
XmnI	GAANNNNTTC	1 cut(s)	425
XspI	CTAG	1 cut(s)	143

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.