Protein MEI2-like 4 isoform X1
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| RRM_1 | PF00076 | 268 - 332 | 3.6e-10 | RNA recognition motif |
| RRM_5 | PF13893 | 350 - 426 | 1.3e-06 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) |
| RRM_1 | PF00076 | 353 - 418 | 3.3e-10 | RNA recognition motif |
| RRM_2 | PF04059 | 786 - 882 | 8.2e-54 | RNA recognition motif 2 |
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 2705 |
| Acc36I | ACCTGC | 4 cut(s) | 67, 2151, 2705, 2849 |
| AccB1I | GGYRCC | 3 cut(s) | 984, 1909, 2725 |
| AccI | GTMKAC | 1 cut(s) | 2393 |
| AciI | CCGC | 3 cut(s) | 347, 1550, 2332 |
| AclWI | GGATC | 6 cut(s) | 186, 1132, 1460, 1756, 2510, 2857 |
| AcoI | YGGCCR | 1 cut(s) | 1835 |
| AcsI | RAATTY | 7 cut(s) | 274, 1178, 1556, 1863, 2093, 2233, 2610 |
| AcuI | CTGAAG | 3 cut(s) | 30, 1014, 1401 |
| AcvI | CACGTG | 1 cut(s) | 1724 |
| AcyI | GRCGYC | 1 cut(s) | 985 |
| AfaI | GTAC | 3 cut(s) | 1410, 1467, 2755 |
| AfiI | CCNNNNNNNGG | 8 cut(s) | 301, 1224, 1245, 1778, 1887, 1987, 2714, 2819 |
| AflII | CTTAAG | 1 cut(s) | 259 |
| AflIII | ACRYGT | 2 cut(s) | 1437, 2109 |
| AgsI | TTSAA | 9 cut(s) | 229, 274, 524, 833, 1499, 1644, 2551, 2615, 2695 |
| AleI | CACNNNNGTG | 2 cut(s) | 1058, 1722 |
| Alw21I | GWGCWC | 1 cut(s) | 1292 |
| Alw26I | GTCTC | 9 cut(s) | 323, 430, 675, 864, 1711, 1818, 1990, 2752, 2775 |
| AlwI | GGATC | 6 cut(s) | 186, 1132, 1460, 1756, 2510, 2857 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 764, 1205 |
| Ama87I | CYCGRG | 5 cut(s) | 301, 400, 599, 1291, 2021 |
| AoxI | GGCC | 7 cut(s) | 28, 534, 1333, 1519, 1835, 2175, 2704 |
| ApeKI | GCWGC | 8 cut(s) | 941, 1196, 1297, 1871, 1931, 2283, 2414, 2624 |
| ApoI | RAATTY | 7 cut(s) | 274, 1178, 1556, 1863, 2093, 2233, 2610 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 1439 |
| AspA2I | CCTAGG | 1 cut(s) | 1904 |
| AspLEI | GCGC | 1 cut(s) | 987 |
| AspS9I | GGNCC | 7 cut(s) | 28, 535, 1990, 2140, 2168, 2176, 2705 |
| AsuC2I | CCSGG | 1 cut(s) | 1240 |
| AsuHPI | GGTGA | 9 cut(s) | 134, 173, 178, 226, 794, 1566, 1836, 2070, 2729 |
| AsuII | TTCGAA | 1 cut(s) | 734 |
| AvaI | CYCGRG | 5 cut(s) | 301, 400, 599, 1291, 2021 |
| AvaII | GGWCC | 3 cut(s) | 1990, 2140, 2168 |
| AvrII | CCTAGG | 1 cut(s) | 1904 |
| BaeGI | GKGCMC | 3 cut(s) | 1055, 1719, 1912 |
| BalI | TGGCCA | 1 cut(s) | 1837 |
| BanI | GGYRCC | 3 cut(s) | 984, 1909, 2725 |
| BanII | GRGCYC | 3 cut(s) | 600, 1292, 2810 |
| BbrPI | CACGTG | 1 cut(s) | 1724 |
| BbsI | GAAGAC | 1 cut(s) | 840 |
| Bbv12I | GWGCWC | 1 cut(s) | 1292 |
| BbvI | GCAGC | 8 cut(s) | 953, 1183, 1284, 1883, 1943, 2295, 2401, 2611 |
| BceAI | ACGGC | 3 cut(s) | 272, 1585, 2664 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 724, 758 |
| BciVI | GTATCC | 1 cut(s) | 2211 |
| BclI | TGATCA | 2 cut(s) | 2242, 2719 |
| BcnI | CCSGG | 1 cut(s) | 1240 |
| BcoDI | GTCTC | 9 cut(s) | 323, 430, 675, 864, 1711, 1818, 1990, 2752, 2775 |
| BfaI | CTAG | 4 cut(s) | 795, 1362, 1461, 1905 |
| BfmI | CTRYAG | 3 cut(s) | 1197, 1298, 2856 |
| BfoI | RGCGCY | 1 cut(s) | 988 |
| BfrI | CTTAAG | 1 cut(s) | 259 |
| BfuAI | ACCTGC | 4 cut(s) | 67, 2151, 2705, 2849 |
| BfuI | GTATCC | 1 cut(s) | 2211 |
| BisI | GCNGC | 8 cut(s) | 942, 1197, 1298, 1872, 1932, 2284, 2415, 2625 |
| BlnI | CCTAGG | 1 cut(s) | 1904 |
| BlsI | GCNGC | 8 cut(s) | 943, 1198, 1299, 1873, 1933, 2285, 2416, 2626 |
| Bme18I | GGWCC | 3 cut(s) | 1990, 2140, 2168 |
| BmeT110I | CYCGRG | 5 cut(s) | 301, 400, 599, 1291, 2021 |
| BmgT120I | GGNCC | 7 cut(s) | 28, 535, 1990, 2140, 2168, 2176, 2705 |
| BmsI | GCATC | 7 cut(s) | 146, 344, 1638, 1881, 2394, 2600, 2666 |
| BoxI | GACNNNNGTC | 1 cut(s) | 442 |
| BpiI | GAAGAC | 1 cut(s) | 840 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 1342, 1374 |
| BpmI | CTGGAG | 6 cut(s) | 603, 744, 786, 950, 1293, 1806 |
| Bpu14I | TTCGAA | 1 cut(s) | 734 |
| BpuEI | CTTGAG | 5 cut(s) | 170, 1277, 1293, 1693, 2635 |
| BpuMI | CCSGG | 1 cut(s) | 1240 |
| BsaAI | YACGTR | 1 cut(s) | 1724 |
| BsaBI | GATNNNNATC | 1 cut(s) | 1044 |
| BsaHI | GRCGYC | 1 cut(s) | 985 |
| BsaI | GGTCTC | 1 cut(s) | 2752 |
| BsaJI | CCNNGG | 8 cut(s) | 904, 1567, 1904, 1970, 2172, 2784, 2797, 2865 |
| BsaWI | WCCGGW | 1 cut(s) | 1992 |
| Bsc4I | CCNNNNNNNGG | 8 cut(s) | 301, 1224, 1245, 1778, 1887, 1987, 2714, 2819 |
| Bse118I | RCCGGY | 1 cut(s) | 119 |
| Bse1I | ACTGG | 1 cut(s) | 1381 |
| Bse3DI | GCAATG | 3 cut(s) | 752, 1941, 2491 |
| Bse8I | GATNNNNATC | 1 cut(s) | 1044 |
| BseDI | CCNNGG | 8 cut(s) | 904, 1567, 1904, 1970, 2172, 2784, 2797, 2865 |
| BseGI | GGATG | 9 cut(s) | 634, 675, 1330, 1563, 1585, 1876, 1896, 2038, 2353 |
| BseJI | GATNNNNATC | 1 cut(s) | 1044 |
| BseLI | CCNNNNNNNGG | 8 cut(s) | 301, 1224, 1245, 1778, 1887, 1987, 2714, 2819 |
| BseMI | GCAATG | 3 cut(s) | 752, 1941, 2491 |
| BseMII | CTCAG | 5 cut(s) | 405, 831, 1518, 1829, 2832 |
| BseNI | ACTGG | 1 cut(s) | 1381 |
| BseRI | GAGGAG | 3 cut(s) | 653, 741, 2804 |
| BseSI | GKGCMC | 3 cut(s) | 1055, 1719, 1912 |
| BseXI | GCAGC | 8 cut(s) | 953, 1183, 1284, 1883, 1943, 2295, 2401, 2611 |
| BseYI | CCCAGC | 2 cut(s) | 221, 623 |
| BshFI | GGCC | 7 cut(s) | 30, 536, 1335, 1521, 1837, 2177, 2706 |
| BshNI | GGYRCC | 3 cut(s) | 984, 1909, 2725 |
| BsiHKAI | GWGCWC | 1 cut(s) | 1292 |
| BsiHKCI | CYCGRG | 5 cut(s) | 301, 400, 599, 1291, 2021 |
| BsiSI | CCGG | 4 cut(s) | 120, 988, 1239, 1993 |
| BsiWI | CGTACG | 1 cut(s) | 2753 |
| BslFI | GGGAC | 3 cut(s) | 502, 2003, 2667 |
| BslI | CCNNNNNNNGG | 8 cut(s) | 301, 1224, 1245, 1778, 1887, 1987, 2714, 2819 |
| BsmAI | GTCTC | 9 cut(s) | 323, 430, 675, 864, 1711, 1818, 1990, 2752, 2775 |
| BsmBI | CGTCTC | 1 cut(s) | 675 |
| BsmFI | GGGAC | 3 cut(s) | 502, 2003, 2667 |
| BsmI | GAATGC | 3 cut(s) | 955, 2070, 2498 |
| BsnI | GGCC | 7 cut(s) | 30, 536, 1335, 1521, 1837, 2177, 2706 |
| Bso31I | GGTCTC | 1 cut(s) | 2752 |
| BsoBI | CYCGRG | 5 cut(s) | 301, 400, 599, 1291, 2021 |
| Bsp119I | TTCGAA | 1 cut(s) | 734 |
| Bsp1286I | GDGCHC | 6 cut(s) | 600, 1055, 1292, 1719, 1912, 2810 |
| Bsp1407I | TGTACA | 1 cut(s) | 1408 |
| Bsp143I | GATC | 8 cut(s) | 178, 1137, 1452, 1748, 2242, 2515, 2719, 2849 |
| Bsp19I | CCATGG | 1 cut(s) | 2797 |
| BspACI | CCGC | 3 cut(s) | 347, 1550, 2332 |
| BspANI | GGCC | 7 cut(s) | 30, 536, 1335, 1521, 1837, 2177, 2706 |
| BspCNI | CTCAG | 5 cut(s) | 406, 832, 1519, 1828, 2831 |
| BspMAI | CTGCAG | 3 cut(s) | 1201, 1302, 2860 |
| BspMI | ACCTGC | 4 cut(s) | 67, 2151, 2705, 2849 |
| BspPI | GGATC | 6 cut(s) | 186, 1132, 1460, 1756, 2510, 2857 |
| BspT104I | TTCGAA | 1 cut(s) | 734 |
| BspT107I | GGYRCC | 3 cut(s) | 984, 1909, 2725 |
| BspTI | CTTAAG | 1 cut(s) | 259 |
| BspTNI | GGTCTC | 1 cut(s) | 2752 |
| BsrDI | GCAATG | 3 cut(s) | 752, 1941, 2491 |
| BsrFI | RCCGGY | 1 cut(s) | 119 |
| BsrGI | TGTACA | 1 cut(s) | 1408 |
| BsrI | ACTGG | 1 cut(s) | 1381 |
| BssAI | RCCGGY | 1 cut(s) | 119 |
| BssECI | CCNNGG | 8 cut(s) | 904, 1567, 1904, 1970, 2172, 2784, 2797, 2865 |
| BssMI | GATC | 8 cut(s) | 178, 1137, 1452, 1748, 2242, 2515, 2719, 2849 |
| BssNAI | GTATAC | 1 cut(s) | 2394 |
| BssNI | GRCGYC | 1 cut(s) | 985 |
| BssT1I | CCWWGG | 3 cut(s) | 1904, 2797, 2865 |
| Bst1107I | GTATAC | 1 cut(s) | 2394 |
| Bst4CI | ACNGT | 5 cut(s) | 166, 381, 905, 1408, 2313 |
| Bst6I | CTCTTC | 4 cut(s) | 495, 1238, 1420, 2696 |
| BstACI | GRCGYC | 1 cut(s) | 985 |
| BstAFI | CTTAAG | 1 cut(s) | 259 |
| BstAPI | GCANNNNNTGC | 3 cut(s) | 1205, 1635, 2597 |
| BstAUI | TGTACA | 1 cut(s) | 1408 |
| BstBAI | YACGTR | 1 cut(s) | 1724 |
| BstBI | TTCGAA | 1 cut(s) | 734 |
| BstC8I | GCNNGC | 3 cut(s) | 895, 1546, 1550 |
| BstDEI | CTNAG | 6 cut(s) | 414, 840, 1100, 1527, 1815, 2818 |
| BstDSI | CCRYGG | 3 cut(s) | 904, 1567, 2797 |
| BstF5I | GGATG | 9 cut(s) | 634, 675, 1330, 1563, 1585, 1876, 1896, 2038, 2353 |
| BstH2I | RGCGCY | 1 cut(s) | 988 |
| BstHHI | GCGC | 1 cut(s) | 987 |
| BstKTI | GATC | 8 cut(s) | 181, 1140, 1455, 1751, 2245, 2518, 2722, 2852 |
| BstMAI | GTCTC | 9 cut(s) | 323, 430, 675, 864, 1711, 1818, 1990, 2752, 2775 |
| BstMBI | GATC | 8 cut(s) | 178, 1137, 1452, 1748, 2242, 2515, 2719, 2849 |
| BstNSI | RCATGY | 4 cut(s) | 106, 119, 1441, 2113 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 442 |
| BstSFI | CTRYAG | 3 cut(s) | 1197, 1298, 2856 |
| BstSLI | GKGCMC | 3 cut(s) | 1055, 1719, 1912 |
| BstV1I | GCAGC | 8 cut(s) | 953, 1183, 1284, 1883, 1943, 2295, 2401, 2611 |
| BstV2I | GAAGAC | 1 cut(s) | 840 |
| BstX2I | RGATCY | 3 cut(s) | 1137, 1452, 1748 |
| BstYI | RGATCY | 3 cut(s) | 1137, 1452, 1748 |
| BstZ17I | GTATAC | 1 cut(s) | 2394 |
| BsuI | GTATCC | 1 cut(s) | 2211 |
| BsuRI | GGCC | 7 cut(s) | 30, 536, 1335, 1521, 1837, 2177, 2706 |
| BtgI | CCRYGG | 3 cut(s) | 904, 1567, 2797 |
| BtgZI | GCGATG | 2 cut(s) | 968, 2689 |
| BtsCI | GGATG | 9 cut(s) | 634, 675, 1330, 1563, 1585, 1876, 1896, 2038, 2353 |
| BtsI | GCAGTG | 3 cut(s) | 618, 757, 1657 |
| BtsIMutI | CAGTG | 3 cut(s) | 618, 757, 1657 |
| BveI | ACCTGC | 4 cut(s) | 67, 2151, 2705, 2849 |
| Cac8I | GCNNGC | 3 cut(s) | 895, 1546, 1550 |
| CaiI | CAGNNNCTG | 2 cut(s) | 764, 1205 |
| CfoI | GCGC | 1 cut(s) | 987 |
| Cfr10I | RCCGGY | 1 cut(s) | 119 |
| Cfr13I | GGNCC | 7 cut(s) | 28, 535, 1990, 2140, 2168, 2176, 2705 |
| CseI | GACGC | 1 cut(s) | 2417 |
| Csp6I | GTAC | 3 cut(s) | 1409, 1466, 2754 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 886, 921 |
| CviQI | GTAC | 3 cut(s) | 1409, 1466, 2754 |
| DdeI | CTNAG | 6 cut(s) | 414, 840, 1100, 1527, 1815, 2818 |
| DinI | GGCGCC | 1 cut(s) | 986 |
| DpnI | GATC | 8 cut(s) | 180, 1139, 1454, 1750, 2244, 2517, 2721, 2851 |
| DpnII | GATC | 8 cut(s) | 178, 1137, 1452, 1748, 2242, 2515, 2719, 2849 |
| EaeI | YGGCCR | 1 cut(s) | 1835 |
| Eam1104I | CTCTTC | 4 cut(s) | 495, 1238, 1420, 2696 |
| EarI | CTCTTC | 4 cut(s) | 495, 1238, 1420, 2696 |
| Ecl136II | GAGCTC | 1 cut(s) | 1290 |
| Eco130I | CCWWGG | 3 cut(s) | 1904, 2797, 2865 |
| Eco24I | GRGCYC | 3 cut(s) | 600, 1292, 2810 |
| Eco31I | GGTCTC | 1 cut(s) | 2752 |
| Eco32I | GATATC | 1 cut(s) | 921 |
| Eco47I | GGWCC | 3 cut(s) | 1990, 2140, 2168 |
| Eco53kI | GAGCTC | 1 cut(s) | 1290 |
| Eco57I | CTGAAG | 3 cut(s) | 30, 1014, 1401 |
| Eco72I | CACGTG | 1 cut(s) | 1724 |
| Eco88I | CYCGRG | 5 cut(s) | 301, 400, 599, 1291, 2021 |
| EcoICRI | GAGCTC | 1 cut(s) | 1290 |
| EcoO109I | RGGNCCY | 2 cut(s) | 28, 2168 |
| EcoRI | GAATTC | 2 cut(s) | 2233, 2610 |
| EcoRV | GATATC | 1 cut(s) | 921 |
| EcoT14I | CCWWGG | 3 cut(s) | 1904, 2797, 2865 |
| EcoT22I | ATGCAT | 3 cut(s) | 1795, 1896, 2500 |
| EcoT38I | GRGCYC | 3 cut(s) | 600, 1292, 2810 |
| EgeI | GGCGCC | 1 cut(s) | 986 |
| EheI | GGCGCC | 1 cut(s) | 986 |
| ErhI | CCWWGG | 3 cut(s) | 1904, 2797, 2865 |
| Esp3I | CGTCTC | 1 cut(s) | 675 |
| FaqI | GGGAC | 3 cut(s) | 502, 2003, 2667 |
| FauI | CCCGC | 1 cut(s) | 1557 |
| FauNDI | CATATG | 3 cut(s) | 1920, 2005, 2443 |
| FbaI | TGATCA | 2 cut(s) | 2242, 2719 |
| FblI | GTMKAC | 1 cut(s) | 2393 |
| Fnu4HI | GCNGC | 8 cut(s) | 942, 1197, 1298, 1872, 1932, 2284, 2415, 2625 |
| FokI | GGATG | 9 cut(s) | 641, 682, 1337, 1550, 1572, 1863, 1903, 2025, 2360 |
| FriOI | GRGCYC | 3 cut(s) | 600, 1292, 2810 |
| Fsp4HI | GCNGC | 8 cut(s) | 942, 1197, 1298, 1872, 1932, 2284, 2415, 2625 |
| FspBI | CTAG | 4 cut(s) | 795, 1362, 1461, 1905 |
| GlaI | GCGC | 1 cut(s) | 986 |
| GluI | GCNGC | 8 cut(s) | 942, 1197, 1298, 1872, 1932, 2284, 2415, 2625 |
| GsaI | CCCAGC | 2 cut(s) | 225, 627 |
| GsuI | CTGGAG | 6 cut(s) | 603, 744, 786, 950, 1293, 1806 |
| HaeII | RGCGCY | 1 cut(s) | 988 |
| HaeIII | GGCC | 7 cut(s) | 30, 536, 1335, 1521, 1837, 2177, 2706 |
| HapII | CCGG | 4 cut(s) | 120, 988, 1239, 1993 |
| HgaI | GACGC | 1 cut(s) | 2417 |
| HhaI | GCGC | 1 cut(s) | 987 |
| Hin1I | GRCGYC | 1 cut(s) | 985 |
| Hin6I | GCGC | 1 cut(s) | 985 |
| HinP1I | GCGC | 1 cut(s) | 985 |
| HincII | GTYRAC | 1 cut(s) | 2299 |
| HindII | GTYRAC | 1 cut(s) | 2299 |
| HindIII | AAGCTT | 2 cut(s) | 992, 1253 |
| HpaII | CCGG | 4 cut(s) | 120, 988, 1239, 1993 |
| HphI | GGTGA | 9 cut(s) | 134, 173, 178, 226, 794, 1566, 1836, 2070, 2729 |
| Hpy166II | GTNNAC | 7 cut(s) | 785, 1411, 1466, 1727, 1765, 2299, 2394 |
| Hpy8I | GTNNAC | 7 cut(s) | 785, 1411, 1466, 1727, 1765, 2299, 2394 |
| HpyAV | CCTTC | 6 cut(s) | 344, 563, 801, 1038, 2273, 2578 |
| HpyCH4III | ACNGT | 5 cut(s) | 166, 381, 905, 1408, 2313 |
| HpyCH4IV | ACGT | 3 cut(s) | 1723, 1761, 2257 |
| HpyF3I | CTNAG | 6 cut(s) | 414, 840, 1100, 1527, 1815, 2818 |
| HpySE526I | ACGT | 3 cut(s) | 1723, 1761, 2257 |
| Hsp92I | GRCGYC | 1 cut(s) | 985 |
| HspAI | GCGC | 1 cut(s) | 985 |
| KasI | GGCGCC | 1 cut(s) | 984 |
| Ksp22I | TGATCA | 2 cut(s) | 2242, 2719 |
| Kzo9I | GATC | 8 cut(s) | 178, 1137, 1452, 1748, 2242, 2515, 2719, 2849 |
| LmnI | GCTCC | 5 cut(s) | 1287, 1394, 1426, 1825, 2805 |
| Lsp1109I | GCAGC | 8 cut(s) | 953, 1183, 1284, 1883, 1943, 2295, 2401, 2611 |
| LweI | GCATC | 7 cut(s) | 146, 344, 1638, 1881, 2394, 2600, 2666 |
| MaeI | CTAG | 4 cut(s) | 795, 1362, 1461, 1905 |
| MaeII | ACGT | 3 cut(s) | 1723, 1761, 2257 |
| MaeIII | GTNAC | 7 cut(s) | 129, 586, 1302, 1364, 1372, 1757, 2105 |
| MalI | GATC | 8 cut(s) | 180, 1139, 1454, 1750, 2244, 2517, 2721, 2851 |
| MboI | GATC | 8 cut(s) | 178, 1137, 1452, 1748, 2242, 2515, 2719, 2849 |
| MfeI | CAATTG | 3 cut(s) | 2418, 2463, 2595 |
| MflI | RGATCY | 3 cut(s) | 1137, 1452, 1748 |
| MhlI | GDGCHC | 6 cut(s) | 600, 1055, 1292, 1719, 1912, 2810 |
| MlsI | TGGCCA | 1 cut(s) | 1837 |
| MluNI | TGGCCA | 1 cut(s) | 1837 |
| Mly113I | GGCGCC | 1 cut(s) | 985 |
| MlyI | GAGTC | 8 cut(s) | 293, 524, 830, 874, 1538, 1713, 2033, 2864 |
| MmeI | TCCRAC | 2 cut(s) | 624, 2070 |
| Mox20I | TGGCCA | 1 cut(s) | 1837 |
| Mph1103I | ATGCAT | 3 cut(s) | 1795, 1896, 2500 |
| MroXI | GAANNNNTTC | 1 cut(s) | 1439 |
| MscI | TGGCCA | 1 cut(s) | 1837 |
| MslI | CAYNNNNRTG | 8 cut(s) | 120, 777, 1058, 1722, 1788, 2124, 2160, 2507 |
| Msp20I | TGGCCA | 1 cut(s) | 1837 |
| MspA1I | CMGCKG | 2 cut(s) | 698, 1552 |
| MspCI | CTTAAG | 1 cut(s) | 259 |
| MspI | CCGG | 4 cut(s) | 120, 988, 1239, 1993 |
| MunI | CAATTG | 3 cut(s) | 2418, 2463, 2595 |
| Mva1269I | GAATGC | 3 cut(s) | 955, 2070, 2498 |
| NarI | GGCGCC | 1 cut(s) | 985 |
| NciI | CCSGG | 1 cut(s) | 1240 |
| NcoI | CCATGG | 1 cut(s) | 2797 |
| NdeI | CATATG | 3 cut(s) | 1920, 2005, 2443 |
| NdeII | GATC | 8 cut(s) | 178, 1137, 1452, 1748, 2242, 2515, 2719, 2849 |
| NmuCI | GTSAC | 1 cut(s) | 129 |
| NsiI | ATGCAT | 3 cut(s) | 1795, 1896, 2500 |
| NspI | RCATGY | 4 cut(s) | 106, 119, 1441, 2113 |
| NspV | TTCGAA | 1 cut(s) | 734 |
| OliI | CACNNNNGTG | 2 cut(s) | 1058, 1722 |
| PaeR7I | CTCGAG | 2 cut(s) | 400, 599 |
| PaqCI | CACCTGC | 1 cut(s) | 2705 |
| PciI | ACATGT | 2 cut(s) | 1437, 2109 |
| PctI | GAATGC | 3 cut(s) | 955, 2070, 2498 |
| PdmI | GAANNNNTTC | 1 cut(s) | 1439 |
| PfeI | GAWTC | 5 cut(s) | 1012, 1076, 1202, 1499, 2015 |
| Pfl23II | CGTACG | 1 cut(s) | 2753 |
| PfoI | TCCNGGA | 5 cut(s) | 721, 1270, 1777, 1822, 2203 |
| PkrI | GCNGC | 8 cut(s) | 943, 1198, 1299, 1873, 1933, 2285, 2416, 2626 |
| PleI | GAGTC | 8 cut(s) | 293, 523, 830, 874, 1537, 1712, 2032, 2864 |
| PluTI | GGCGCC | 1 cut(s) | 988 |
| PmaCI | CACGTG | 1 cut(s) | 1724 |
| PmlI | CACGTG | 1 cut(s) | 1724 |
| PpsI | GAGTC | 8 cut(s) | 293, 523, 830, 874, 1537, 1712, 2032, 2864 |
| Ppu21I | YACGTR | 1 cut(s) | 1724 |
| PpuMI | RGGWCCY | 1 cut(s) | 2168 |
| PscI | ACATGT | 2 cut(s) | 1437, 2109 |
| PshAI | GACNNNNGTC | 1 cut(s) | 442 |
| Psp124BI | GAGCTC | 1 cut(s) | 1292 |
| Psp5II | RGGWCCY | 1 cut(s) | 2168 |
| PspCI | CACGTG | 1 cut(s) | 1724 |
| PspFI | CCCAGC | 2 cut(s) | 221, 623 |
| PspLI | CGTACG | 1 cut(s) | 2753 |
| PspPI | GGNCC | 7 cut(s) | 28, 535, 1990, 2140, 2168, 2176, 2705 |
| PspPPI | RGGWCCY | 1 cut(s) | 2168 |
| PspXI | VCTCGAGB | 1 cut(s) | 599 |
| PstI | CTGCAG | 3 cut(s) | 1201, 1302, 2860 |
| PstNI | CAGNNNCTG | 2 cut(s) | 764, 1205 |
| PsuI | RGATCY | 3 cut(s) | 1137, 1452, 1748 |
| PvuII | CAGCTG | 1 cut(s) | 698 |
| RsaI | GTAC | 3 cut(s) | 1410, 1467, 2755 |
| RsaNI | GTAC | 3 cut(s) | 1409, 1466, 2754 |
| RseI | CAYNNNNRTG | 8 cut(s) | 120, 777, 1058, 1722, 1788, 2124, 2160, 2507 |
| SacI | GAGCTC | 1 cut(s) | 1292 |
| SatI | GCNGC | 8 cut(s) | 942, 1197, 1298, 1872, 1932, 2284, 2415, 2625 |
| Sau3AI | GATC | 8 cut(s) | 178, 1137, 1452, 1748, 2242, 2515, 2719, 2849 |
| Sau96I | GGNCC | 7 cut(s) | 28, 535, 1990, 2140, 2168, 2176, 2705 |
| SchI | GAGTC | 8 cut(s) | 293, 524, 830, 874, 1538, 1713, 2033, 2864 |
| SduI | GDGCHC | 6 cut(s) | 600, 1055, 1292, 1719, 1912, 2810 |
| SfaNI | GCATC | 7 cut(s) | 146, 344, 1638, 1881, 2394, 2600, 2666 |
| SfcI | CTRYAG | 3 cut(s) | 1197, 1298, 2856 |
| SfoI | GGCGCC | 1 cut(s) | 986 |
| Sfr274I | CTCGAG | 2 cut(s) | 400, 599 |
| SfuI | TTCGAA | 1 cut(s) | 734 |
| SinI | GGWCC | 3 cut(s) | 1990, 2140, 2168 |
| SlaI | CTCGAG | 2 cut(s) | 400, 599 |
| SmiMI | CAYNNNNRTG | 8 cut(s) | 120, 777, 1058, 1722, 1788, 2124, 2160, 2507 |
| SmlI | CTYRAG | 8 cut(s) | 149, 259, 400, 599, 1256, 1308, 1708, 2650 |
| SmoI | CTYRAG | 8 cut(s) | 149, 259, 400, 599, 1256, 1308, 1708, 2650 |
| SsiI | CCGC | 3 cut(s) | 347, 1550, 2332 |
| SspDI | GGCGCC | 1 cut(s) | 984 |
| SspI | AATATT | 1 cut(s) | 2380 |
| SspMI | CTAG | 4 cut(s) | 795, 1362, 1461, 1905 |
| SstI | GAGCTC | 1 cut(s) | 1292 |
| StyI | CCWWGG | 3 cut(s) | 1904, 2797, 2865 |
| TaaI | ACNGT | 5 cut(s) | 166, 381, 905, 1408, 2313 |
| TaiI | ACGT | 3 cut(s) | 1726, 1764, 2260 |
| TaqI | TCGA | 9 cut(s) | 281, 401, 600, 734, 947, 1010, 1176, 2608, 2773 |
| TatI | WGTACW | 1 cut(s) | 1408 |
| TfiI | GAWTC | 5 cut(s) | 1012, 1076, 1202, 1499, 2015 |
| TscAI | CASTG | 3 cut(s) | 625, 757, 1657 |
| TseFI | GTSAC | 1 cut(s) | 129 |
| TseI | GCWGC | 8 cut(s) | 941, 1196, 1297, 1871, 1931, 2283, 2414, 2624 |
| Tsp45I | GTSAC | 1 cut(s) | 129 |
| TspGWI | ACGGA | 3 cut(s) | 882, 1130, 1903 |
| TspRI | CASTG | 3 cut(s) | 625, 757, 1657 |
| Vha464I | CTTAAG | 1 cut(s) | 259 |
| VpaK11BI | GGWCC | 3 cut(s) | 1990, 2140, 2168 |
| XapI | RAATTY | 7 cut(s) | 274, 1178, 1556, 1863, 2093, 2233, 2610 |
| XceI | RCATGY | 4 cut(s) | 106, 119, 1441, 2113 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 1830 |
| XhoI | CTCGAG | 2 cut(s) | 400, 599 |
| XmaJI | CCTAGG | 1 cut(s) | 1904 |
| XmiI | GTMKAC | 1 cut(s) | 2393 |
| XmnI | GAANNNNTTC | 1 cut(s) | 1439 |
| XspI | CTAG | 4 cut(s) | 795, 1362, 1461, 1905 |
| Zsp2I | ATGCAT | 3 cut(s) | 1795, 1896, 2500 |