RchiOBHm_Chr4g0438451

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
OG0015706
Physical Location & Seq
Reverse (-)
61151761 .. 61154059
2299 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ40658

Sequence Viewer

Length: 156 bp
ATGGATCTACAGCAGCAGAACGCAAGAGCTCCACAGCCTCGCCGCGGCGGCGGTTTCTCGGCCCAGTCCTCTTTCCTCTTCCATCTAATGGTCATTTTGTTTGTGCTAGAAGCCTGTCTGCACCGAGTCCCGGAAGGTCATGTTGGGGTTTATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

51

Amino Acids

5.71

Weight (kDa)

8.04

Isoelectric Point (pI)

80.61

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 88
AccII CGCG 1 cut(s) 45
AciI CCGC 4 cut(s) 43, 45, 48, 51
AclWI GGATC 1 cut(s) 12
AfiI CCNNNNNNNGG 3 cut(s) 44, 88, 130
AjuI GAANNNNNNNTTGG 1 cut(s) 126
AluBI AGCT 1 cut(s) 29
AluI AGCT 1 cut(s) 29
Alw21I GWGCWC 1 cut(s) 31
AlwI GGATC 1 cut(s) 12
AoxI GGCC 1 cut(s) 60
ApeKI GCWGC 1 cut(s) 13
AspS9I GGNCC 1 cut(s) 61
AsuC2I CCSGG 1 cut(s) 131
BanII GRGCYC 1 cut(s) 31
Bbv12I GWGCWC 1 cut(s) 31
BbvI GCAGC 1 cut(s) 25
BccI CCATC 1 cut(s) 90
BcnI CCSGG 1 cut(s) 131
BfaI CTAG 1 cut(s) 107
BfmI CTRYAG 1 cut(s) 8
BglI GCCNNNNNGGC 1 cut(s) 48
BisI GCNGC 4 cut(s) 14, 43, 46, 49
BlsI GCNGC 4 cut(s) 15, 44, 47, 50
Bme1390I CCNGG 1 cut(s) 131
BmgT120I GGNCC 1 cut(s) 61
BmrFI CCNGG 1 cut(s) 131
BmrI ACTGGG 1 cut(s) 58
BmuI ACTGGG 1 cut(s) 58
BpuMI CCSGG 1 cut(s) 131
BsaJI CCNNGG 1 cut(s) 43
Bsc4I CCNNNNNNNGG 3 cut(s) 44, 88, 130
Bse1I ACTGG 1 cut(s) 64
BseDI CCNNGG 1 cut(s) 43
BseLI CCNNNNNNNGG 3 cut(s) 44, 88, 130
BseNI ACTGG 1 cut(s) 64
BseXI GCAGC 1 cut(s) 25
BsgI GTGCAG 1 cut(s) 104
Bsh1236I CGCG 1 cut(s) 45
BshFI GGCC 1 cut(s) 62
BsiHKAI GWGCWC 1 cut(s) 31
BsiSI CCGG 1 cut(s) 131
BslFI GGGAC 1 cut(s) 113
BslI CCNNNNNNNGG 3 cut(s) 44, 88, 130
BsmFI GGGAC 1 cut(s) 113
BsnI GGCC 1 cut(s) 62
Bsp1286I GDGCHC 1 cut(s) 31
Bsp143I GATC 1 cut(s) 4
BspACI CCGC 4 cut(s) 43, 45, 48, 51
BspANI GGCC 1 cut(s) 62
BspFNI CGCG 1 cut(s) 45
BspPI GGATC 1 cut(s) 12
BsrI ACTGG 1 cut(s) 64
BssECI CCNNGG 1 cut(s) 43
BssMI GATC 1 cut(s) 4
Bst6I CTCTTC 1 cut(s) 83
BstDSI CCRYGG 1 cut(s) 43
BstFNI CGCG 1 cut(s) 45
BstKTI GATC 1 cut(s) 7
BstMBI GATC 1 cut(s) 4
BstMWI GCNNNNNNNGC 1 cut(s) 48
BstSCI CCNGG 1 cut(s) 129
BstSFI CTRYAG 1 cut(s) 8
BstUI CGCG 1 cut(s) 45
BstV1I GCAGC 1 cut(s) 25
BstX2I RGATCY 1 cut(s) 4
BstYI RGATCY 1 cut(s) 4
BsuRI GGCC 1 cut(s) 62
BtgI CCRYGG 1 cut(s) 43
Cfr13I GGNCC 1 cut(s) 61
Cfr42I CCGCGG 1 cut(s) 46
CviAII CATG 1 cut(s) 140
CviJI RGCY 4 cut(s) 29, 37, 62, 113
CviKI_1 RGCY 4 cut(s) 29, 37, 62, 113
DpnI GATC 1 cut(s) 6
DpnII GATC 1 cut(s) 4
Eam1104I CTCTTC 1 cut(s) 83
EarI CTCTTC 1 cut(s) 83
Ecl136II GAGCTC 1 cut(s) 29
Eco24I GRGCYC 1 cut(s) 31
Eco53kI GAGCTC 1 cut(s) 29
EcoICRI GAGCTC 1 cut(s) 29
EcoT38I GRGCYC 1 cut(s) 31
FaeI CATG 1 cut(s) 143
FaiI YATR 1 cut(s) 141
FaqI GGGAC 1 cut(s) 113
FatI CATG 1 cut(s) 139
Fnu4HI GCNGC 4 cut(s) 14, 43, 46, 49
FriOI GRGCYC 1 cut(s) 31
Fsp4HI GCNGC 4 cut(s) 14, 43, 46, 49
FspBI CTAG 1 cut(s) 107
GluI GCNGC 4 cut(s) 14, 43, 46, 49
HaeIII GGCC 1 cut(s) 62
HapII CCGG 1 cut(s) 131
Hin1II CATG 1 cut(s) 143
HinfI GANTC 1 cut(s) 126
HpaII CCGG 1 cut(s) 131
HpyAV CCTTC 1 cut(s) 128
HpyCH4V TGCA 1 cut(s) 121
HpyF10VI GCNNNNNNNGC 1 cut(s) 48
Hsp92II CATG 1 cut(s) 143
KspI CCGCGG 1 cut(s) 46
Kzo9I GATC 1 cut(s) 4
LmnI GCTCC 1 cut(s) 34
LpnPI CCDG 3 cut(s) 77, 127, 144
Lsp1109I GCAGC 1 cut(s) 25
MaeI CTAG 1 cut(s) 107
MalI GATC 1 cut(s) 6
MboI GATC 1 cut(s) 4
MboII GAAGA 1 cut(s) 70
MflI RGATCY 1 cut(s) 4
MhlI GDGCHC 1 cut(s) 31
MlyI GAGTC 1 cut(s) 135
MnlI CCTC 3 cut(s) 48, 79, 86
MseI TTAA 1 cut(s) 154
MspA1I CMGCKG 1 cut(s) 45
MspI CCGG 1 cut(s) 131
MspR9I CCNGG 1 cut(s) 131
MvnI CGCG 1 cut(s) 45
MwoI GCNNNNNNNGC 1 cut(s) 48
NciI CCSGG 1 cut(s) 131
NdeII GATC 1 cut(s) 4
NlaIII CATG 1 cut(s) 143
NmeAIII GCCGAG 1 cut(s) 38
PflMI CCANNNNNTGG 1 cut(s) 88
PfoI TCCNGGA 1 cut(s) 129
PkrI GCNGC 4 cut(s) 15, 44, 47, 50
PleI GAGTC 1 cut(s) 134
PpsI GAGTC 1 cut(s) 134
Psp124BI GAGCTC 1 cut(s) 31
PspPI GGNCC 1 cut(s) 61
PsuI RGATCY 1 cut(s) 4
SacI GAGCTC 1 cut(s) 31
SacII CCGCGG 1 cut(s) 46
SaqAI TTAA 1 cut(s) 154
SatI GCNGC 4 cut(s) 14, 43, 46, 49
Sau3AI GATC 1 cut(s) 4
Sau96I GGNCC 1 cut(s) 61
SchI GAGTC 1 cut(s) 135
ScrFI CCNGG 1 cut(s) 131
SduI GDGCHC 1 cut(s) 31
SetI ASST 2 cut(s) 31, 139
SfcI CTRYAG 1 cut(s) 8
Sfr303I CCGCGG 1 cut(s) 46
SgrBI CCGCGG 1 cut(s) 46
SsiI CCGC 4 cut(s) 43, 45, 48, 51
SspMI CTAG 1 cut(s) 107
SstI GAGCTC 1 cut(s) 31
StyD4I CCNGG 1 cut(s) 129
TauI GCSGC 3 cut(s) 45, 48, 51
Tru1I TTAA 1 cut(s) 154
Tru9I TTAA 1 cut(s) 154
TseI GCWGC 1 cut(s) 13
Van91I CCANNNNNTGG 1 cut(s) 88
XspI CTAG 1 cut(s) 107
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.