Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0015706

Physical Location & Seq

Genomic Coordinates Forward (+)

6515938 .. 6517485

Gene Structure 1548 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000006364

Sequence Viewer

CDS Protein Promoter (2k)

Length: 519 bp

ATGGATCTACAGCAGCAGAACGCAAGAGCTCCGCAGCCTCGCCGCGGCGGCGGTTTCTCGGCCCAGTCCTCTGTCCTCTTCCATCTAATGGTCATTTTGTTTGTGCTAGAAGCCTGTCTGCACCAAGTCCCGGAAGGGGTTCATCTCAAGTTGCCTATGATATACTTTGAACCTATTCAAGTGACCCTTCAGACTCATCAGTTTTGTGATATTCCATGTGGTACAAAAGATGATGTCATGATTAACATTGAGAAGATAAAGGTTGTTAACCGGCTTCGCAAAGAATACGTGTATGAGACATTAAGGAGTTATGGGACTCAGTATTACTGCTCATATACATGTGTCGTCGTGCGTAGAGAGATCAGTAAGCCCTGCCGCTCACATTCTATTGAAGAGGTTTTTGATCAGATTGATGAAAAGCTGAGAGAAGCTCTTCACGATGATAGTGCGCATTTTGCTCTCCCGGCATTGAAATCATCAGCGTGCGTGTTACAAGGCTTACTATCCCAGATAGTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Band_7

Protein Analysis

173

Amino Acids

19.67

Weight (kDa)

6.64

Isoelectric Point (pI)

57.7

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015706)

Species	Orthologous Gene IDs
malus_domestica	MD16G1164500.v1.1
rosa_chinensis	RchiOBHm_Chr4g0438451
rosa_laevigata	RLG00000006364
rosa_multiflora	Rmu_co8220000.1_g000001 Rmu_sc0002327.1_g000023 Rmu_sc0019260.1_g000002
rosa_roxburghii	Rroxscaffold_5G00379460
rosa_rugosa	Rorug04G0310000.1
rosa_samantha	Rh4AG360700 Rh4BG372000 Rh4BG372100 Rh4CG386000 Rh4CG386100 Rh4DG366800
rosa_wichuraiana	Rw0G006550 Rw0G016500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	450
AccB7I	CCANNNNNTGG	1 cut(s)	88
AccBSI	CCGCTC	1 cut(s)	378
AccII	CGCG	1 cut(s)	45
AciI	CCGC	6 cut(s)	32, 43, 45, 48, 51, 376
AclWI	GGATC	1 cut(s)	12
AcuI	CTGAAG	1 cut(s)	173
AfaI	GTAC	1 cut(s)	223
AfiI	CCNNNNNNNGG	4 cut(s)	44, 88, 130, 136
AflIII	ACRYGT	2 cut(s)	288, 338
AgsI	TTSAA	4 cut(s)	170, 179, 392, 472
AluBI	AGCT	3 cut(s)	29, 421, 431
AluI	AGCT	3 cut(s)	29, 421, 431
Alw21I	GWGCWC	1 cut(s)	31
Alw26I	GTCTC	1 cut(s)	290
AlwI	GGATC	1 cut(s)	12
AoxI	GGCC	1 cut(s)	60
ApeKI	GCWGC	2 cut(s)	13, 34
Asp700I	GAANNNNTTC	3 cut(s)	138, 174, 432
AspLEI	GCGC	1 cut(s)	451
AspS9I	GGNCC	1 cut(s)	61
AsuC2I	CCSGG	2 cut(s)	131, 464
BanII	GRGCYC	1 cut(s)	31
Bbv12I	GWGCWC	1 cut(s)	31
BbvI	GCAGC	2 cut(s)	25, 46
BccI	CCATC	1 cut(s)	90
BcgI	CGANNNNNNTGC	2 cut(s)	428, 462
BclI	TGATCA	1 cut(s)	403
BcnI	CCSGG	2 cut(s)	131, 464
BcoDI	GTCTC	1 cut(s)	290
BfaI	CTAG	1 cut(s)	107
BfmI	CTRYAG	1 cut(s)	8
BglI	GCCNNNNNGGC	1 cut(s)	48
BisI	GCNGC	6 cut(s)	14, 35, 43, 46, 49, 376
BlsI	GCNGC	6 cut(s)	15, 36, 44, 47, 50, 377
Bme1390I	CCNGG	2 cut(s)	131, 464
BmgT120I	GGNCC	1 cut(s)	61
BmrFI	CCNGG	2 cut(s)	131, 464
BmrI	ACTGGG	1 cut(s)	58
BmuI	ACTGGG	1 cut(s)	58
BplI	GAGNNNNNCTC	2 cut(s)	415, 447
BpuEI	CTTGAG	1 cut(s)	131
BpuMI	CCSGG	2 cut(s)	131, 464
BsaAI	YACGTR	1 cut(s)	289
BsaJI	CCNNGG	1 cut(s)	43
Bsc4I	CCNNNNNNNGG	4 cut(s)	44, 88, 130, 136
Bse118I	RCCGGY	1 cut(s)	270
Bse1I	ACTGG	1 cut(s)	64
BseDI	CCNNGG	1 cut(s)	43
BseLI	CCNNNNNNNGG	4 cut(s)	44, 88, 130, 136
BseMII	CTCAG	2 cut(s)	332, 413
BseNI	ACTGG	1 cut(s)	64
BseXI	GCAGC	2 cut(s)	25, 46
BsgI	GTGCAG	1 cut(s)	104
Bsh1236I	CGCG	1 cut(s)	45
BshFI	GGCC	1 cut(s)	62
BsiHKAI	GWGCWC	1 cut(s)	31
BsiSI	CCGG	3 cut(s)	131, 271, 464
BslFI	GGGAC	2 cut(s)	113, 328
BslI	CCNNNNNNNGG	4 cut(s)	44, 88, 130, 136
BsmAI	GTCTC	1 cut(s)	290
BsmFI	GGGAC	2 cut(s)	113, 328
BsnI	GGCC	1 cut(s)	62
Bsp1286I	GDGCHC	1 cut(s)	31
Bsp143I	GATC	3 cut(s)	4, 360, 403
BspACI	CCGC	6 cut(s)	32, 43, 45, 48, 51, 376
BspANI	GGCC	1 cut(s)	62
BspCNI	CTCAG	2 cut(s)	331, 414
BspFNI	CGCG	1 cut(s)	45
BspHI	TCATGA	1 cut(s)	237
BspPI	GGATC	1 cut(s)	12
BspQI	GCTCTTC	1 cut(s)	438
BsrBI	CCGCTC	1 cut(s)	378
BsrFI	RCCGGY	1 cut(s)	270
BsrI	ACTGG	1 cut(s)	64
BssAI	RCCGGY	1 cut(s)	270
BssECI	CCNNGG	1 cut(s)	43
BssMI	GATC	3 cut(s)	4, 360, 403
Bst6I	CTCTTC	3 cut(s)	83, 387, 438
BstBAI	YACGTR	1 cut(s)	289
BstC8I	GCNNGC	1 cut(s)	484
BstDEI	CTNAG	2 cut(s)	318, 422
BstDSI	CCRYGG	1 cut(s)	43
BstFNI	CGCG	1 cut(s)	45
BstHHI	GCGC	1 cut(s)	451
BstKTI	GATC	3 cut(s)	7, 363, 406
BstMAI	GTCTC	1 cut(s)	290
BstMBI	GATC	3 cut(s)	4, 360, 403
BstMWI	GCNNNNNNNGC	3 cut(s)	48, 455, 464
BstNSI	RCATGY	1 cut(s)	342
BstSCI	CCNGG	2 cut(s)	129, 462
BstSFI	CTRYAG	1 cut(s)	8
BstUI	CGCG	1 cut(s)	45
BstV1I	GCAGC	2 cut(s)	25, 46
BstX2I	RGATCY	1 cut(s)	4
BstYI	RGATCY	1 cut(s)	4
BsuRI	GGCC	1 cut(s)	62
BtgI	CCRYGG	1 cut(s)	43
Cac8I	GCNNGC	1 cut(s)	484
CciI	TCATGA	1 cut(s)	237
CfoI	GCGC	1 cut(s)	451
Cfr10I	RCCGGY	1 cut(s)	270
Cfr13I	GGNCC	1 cut(s)	61
Cfr42I	CCGCGG	1 cut(s)	46
Csp6I	GTAC	1 cut(s)	222
CviAII	CATG	3 cut(s)	216, 238, 339
CviJI	RGCY	9 cut(s)	29, 37, 62, 113, 274, 370, 421, 431, 498
CviKI_1	RGCY	9 cut(s)	29, 37, 62, 113, 274, 370, 421, 431, 498
CviQI	GTAC	1 cut(s)	222
DdeI	CTNAG	2 cut(s)	318, 422
DpnI	GATC	3 cut(s)	6, 362, 405
DpnII	GATC	3 cut(s)	4, 360, 403
Eam1104I	CTCTTC	3 cut(s)	83, 387, 438
EarI	CTCTTC	3 cut(s)	83, 387, 438
Ecl136II	GAGCTC	1 cut(s)	29
Eco24I	GRGCYC	1 cut(s)	31
Eco53kI	GAGCTC	1 cut(s)	29
Eco57I	CTGAAG	1 cut(s)	173
EcoICRI	GAGCTC	1 cut(s)	29
EcoT38I	GRGCYC	1 cut(s)	31
FaeI	CATG	3 cut(s)	219, 241, 342
FaiI	YATR	9 cut(s)	158, 163, 217, 239, 294, 312, 334, 336, 340
FalI	AAGNNNNNCTT	2 cut(s)	171, 203
FaqI	GGGAC	2 cut(s)	113, 328
FatI	CATG	3 cut(s)	215, 237, 338
FbaI	TGATCA	1 cut(s)	403
Fnu4HI	GCNGC	6 cut(s)	14, 35, 43, 46, 49, 376
FriOI	GRGCYC	1 cut(s)	31
Fsp4HI	GCNGC	6 cut(s)	14, 35, 43, 46, 49, 376
FspAI	RTGCGCAY	1 cut(s)	450
FspBI	CTAG	1 cut(s)	107
FspI	TGCGCA	1 cut(s)	450
GlaI	GCGC	1 cut(s)	450
GluI	GCNGC	6 cut(s)	14, 35, 43, 46, 49, 376
HaeIII	GGCC	1 cut(s)	62
HapII	CCGG	3 cut(s)	131, 271, 464
HhaI	GCGC	1 cut(s)	451
Hin1II	CATG	3 cut(s)	219, 241, 342
Hin6I	GCGC	1 cut(s)	449
HinP1I	GCGC	1 cut(s)	449
HincII	GTYRAC	1 cut(s)	268
HindII	GTYRAC	1 cut(s)	268
HinfI	GANTC	2 cut(s)	193, 316
HpaI	GTTAAC	1 cut(s)	268
HpaII	CCGG	3 cut(s)	131, 271, 464
Hpy166II	GTNNAC	1 cut(s)	268
Hpy188I	TCNGA	2 cut(s)	192, 408
Hpy188III	TCNNGA	2 cut(s)	238, 437
Hpy8I	GTNNAC	1 cut(s)	268
Hpy99I	CGWCG	1 cut(s)	350
HpyAV	CCTTC	2 cut(s)	128, 197
HpyCH4IV	ACGT	1 cut(s)	288
HpyCH4V	TGCA	1 cut(s)	121
HpyF10VI	GCNNNNNNNGC	3 cut(s)	48, 455, 464
HpyF3I	CTNAG	2 cut(s)	318, 422
HpySE526I	ACGT	1 cut(s)	288
Hsp92II	CATG	3 cut(s)	219, 241, 342
HspAI	GCGC	1 cut(s)	449
Ksp22I	TGATCA	1 cut(s)	403
KspAI	GTTAAC	1 cut(s)	268
KspI	CCGCGG	1 cut(s)	46
Kzo9I	GATC	3 cut(s)	4, 360, 403
LguI	GCTCTTC	1 cut(s)	438
LmnI	GCTCC	1 cut(s)	34
LpnPI	CCDG	6 cut(s)	77, 127, 144, 284, 385, 477
Lsp1109I	GCAGC	2 cut(s)	25, 46
MaeI	CTAG	1 cut(s)	107
MaeII	ACGT	1 cut(s)	288
MaeIII	GTNAC	2 cut(s)	181, 489
MalI	GATC	3 cut(s)	6, 362, 405
MbiI	CCGCTC	1 cut(s)	378
MboI	GATC	3 cut(s)	4, 360, 403
MboII	GAAGA	4 cut(s)	70, 265, 404, 425
MflI	RGATCY	1 cut(s)	4
MhlI	GDGCHC	1 cut(s)	31
MlyI	GAGTC	2 cut(s)	187, 310
MnlI	CCTC	4 cut(s)	48, 79, 86, 388
MroXI	GAANNNNTTC	3 cut(s)	138, 174, 432
MseI	TTAA	3 cut(s)	243, 267, 302
MslI	CAYNNNNRTG	2 cut(s)	337, 481
MspA1I	CMGCKG	1 cut(s)	45
MspI	CCGG	3 cut(s)	131, 271, 464
MspR9I	CCNGG	2 cut(s)	131, 464
MvnI	CGCG	1 cut(s)	45
MwoI	GCNNNNNNNGC	3 cut(s)	48, 455, 464
NciI	CCSGG	2 cut(s)	131, 464
NdeII	GATC	3 cut(s)	4, 360, 403
NlaIII	CATG	3 cut(s)	219, 241, 342
NmeAIII	GCCGAG	1 cut(s)	38
NmuCI	GTSAC	1 cut(s)	181
NsbI	TGCGCA	1 cut(s)	450
NspI	RCATGY	1 cut(s)	342
PagI	TCATGA	1 cut(s)	237
PciI	ACATGT	1 cut(s)	338
PciSI	GCTCTTC	1 cut(s)	438
PdmI	GAANNNNTTC	3 cut(s)	138, 174, 432
PflMI	CCANNNNNTGG	1 cut(s)	88
PfoI	TCCNGGA	1 cut(s)	129
PkrI	GCNGC	6 cut(s)	15, 36, 44, 47, 50, 377
PleI	GAGTC	2 cut(s)	187, 310
PpsI	GAGTC	2 cut(s)	187, 310
Ppu21I	YACGTR	1 cut(s)	289
PscI	ACATGT	1 cut(s)	338
Psp124BI	GAGCTC	1 cut(s)	31
PspPI	GGNCC	1 cut(s)	61
PsuI	RGATCY	1 cut(s)	4
RsaI	GTAC	1 cut(s)	223
RsaNI	GTAC	1 cut(s)	222
RseI	CAYNNNNRTG	2 cut(s)	337, 481
SacI	GAGCTC	1 cut(s)	31
SacII	CCGCGG	1 cut(s)	46
SapI	GCTCTTC	1 cut(s)	438
SaqAI	TTAA	3 cut(s)	243, 267, 302
SatI	GCNGC	6 cut(s)	14, 35, 43, 46, 49, 376
Sau3AI	GATC	3 cut(s)	4, 360, 403
Sau96I	GGNCC	1 cut(s)	61
SchI	GAGTC	2 cut(s)	187, 310
ScrFI	CCNGG	2 cut(s)	131, 464
SduI	GDGCHC	1 cut(s)	31
SetI	ASST	7 cut(s)	31, 175, 264, 291, 399, 423, 433
SfcI	CTRYAG	1 cut(s)	8
Sfr303I	CCGCGG	1 cut(s)	46
SgrBI	CCGCGG	1 cut(s)	46
SmiMI	CAYNNNNRTG	2 cut(s)	337, 481
SmlI	CTYRAG	1 cut(s)	146
SmoI	CTYRAG	1 cut(s)	146
SsiI	CCGC	6 cut(s)	32, 43, 45, 48, 51, 376
SspMI	CTAG	1 cut(s)	107
SstI	GAGCTC	1 cut(s)	31
StyD4I	CCNGG	2 cut(s)	129, 462
TaiI	ACGT	1 cut(s)	291
TauI	GCSGC	4 cut(s)	45, 48, 51, 378
Tru1I	TTAA	3 cut(s)	243, 267, 302
Tru9I	TTAA	3 cut(s)	243, 267, 302
TseFI	GTSAC	1 cut(s)	181
TseI	GCWGC	2 cut(s)	13, 34
Tsp45I	GTSAC	1 cut(s)	181
TspDTI	ATGAA	2 cut(s)	131, 429
Van91I	CCANNNNNTGG	1 cut(s)	88
XceI	RCATGY	1 cut(s)	342
XmnI	GAANNNNTTC	3 cut(s)	138, 174, 432
XspI	CTAG	1 cut(s)	107

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.