Rh4BG372100

prohibitin homologues

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4B
OG0015706
Physical Location & Seq
Reverse (-)
52916374 .. 52919613
3240 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4BG372100.1

Sequence Viewer

Length: 858 bp
ATGGACTCACAGCAGCAGAGACAAACAGCTCCACAGCCTCGCCCTCGGCCTCAGAATCAAGACGGCGGCGGCGGCAGCGGCGATTTCTCGGCCGTTTGCTTCGTTCTCTTCCTGTTCGTTGCCGTCGCCATTTTCACTTTGGTAATCAGCGGTCTGCACCAAGTTCCGGAAGGTCATGTTGGGGTGTATTGGAGAGGAGGTGCTCTTCTGAAGACTGTTACAGATCCAGGGTTTCATCTCAAGCTTCCCCTGATAACCGACTTTGAGCCTGTTCAAGTGACCCTTCAGACTGATCAGGTGAAGGATATTCCATGTGGTACAAAGGGGGGTGTCGTGATTAACTTTGAGAAGATAGAGGTTGTTAACCGGCTTCGCAAGGAATTTGTATATGAGACTCTTCTCAATTATGGTGTGAAGTATGACCGTACATGGATATATGACAAAATTCATCATGAGATCAATCAGTTCTGCAGCTCACATTCACTTCAAGATGTCTACATTGATGTGTTTGATCAGATTGATGAAAAGATGAAAGAAGCTCTTCAGGGTGATTGCACACGTTATGCTCCAGGTATTGAAATTTTCAGTGTCCGTGTCACAAAGCCGACTATCCCAGATAGTGTAAGACATAACTTTGAGCAGATGGAGGAGCAACGTACCAAGGTCCTAATTGCTATTGAGAGACAGAGAGTGGTGGAGAAAGAGGCAGACACCAAGAAGAAGATAGCTATAAGTGAAGCTGAGAAGAATGCCAATGTGAGTAAGATTCTCATGGAGCAAAAGTTGATGGAGAAGGACAGTTCCAGGAGGCAGCAAGAAATTGAAAATGCATGTATCTTGCTCGGGAAAAGAGTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Band_7

Protein Analysis

285

Amino Acids

32.46

Weight (kDa)

6.41

Isoelectric Point (pI)

45.88

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Band_7 PF01145 54 - 233 8.1e-29 SPFH domain / Band 7 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 495
AccIII TCCGGA 1 cut(s) 166
AciI CCGC 5 cut(s) 66, 69, 72, 78, 150
AclWI GGATC 1 cut(s) 218
AcoI YGGCCR 1 cut(s) 90
AcsI RAATTY 3 cut(s) 380, 444, 579
AcuI CTGAAG 3 cut(s) 230, 269, 527
AfaI GTAC 3 cut(s) 319, 427, 658
AfiI CCNNNNNNNGG 1 cut(s) 166
AflIII ACRYGT 1 cut(s) 557
AgsI TTSAA 4 cut(s) 275, 488, 578, 824
AjnI CCWGG 3 cut(s) 226, 568, 803
AjuI GAANNNNNNNTTGG 2 cut(s) 162, 194
AluBI AGCT 6 cut(s) 29, 244, 474, 539, 728, 740
AluI AGCT 6 cut(s) 29, 244, 474, 539, 728, 740
Alw21I GWGCWC 1 cut(s) 205
Alw26I GTCTC 3 cut(s) 13, 386, 676
AlwI GGATC 1 cut(s) 218
Ama87I CYCGRG 1 cut(s) 842
Aor13HI TCCGGA 1 cut(s) 166
AoxI GGCC 2 cut(s) 47, 90
ApeKI GCWGC 4 cut(s) 13, 75, 471, 811
ApoI RAATTY 3 cut(s) 380, 444, 579
Asp700I GAANNNNTTC 1 cut(s) 540
AspS9I GGNCC 1 cut(s) 664
AsuHPI GGTGA 2 cut(s) 310, 560
AvaI CYCGRG 1 cut(s) 842
AvaII GGWCC 1 cut(s) 664
BbsI GAAGAC 1 cut(s) 218
Bbv12I GWGCWC 1 cut(s) 205
BbvI GCAGC 4 cut(s) 25, 87, 483, 823
BccI CCATC 2 cut(s) 637, 781
BceAI ACGGC 3 cut(s) 77, 79, 107
BciT130I CCWGG 3 cut(s) 228, 570, 805
BclI TGATCA 2 cut(s) 292, 511
BcoDI GTCTC 3 cut(s) 13, 386, 676
BfmI CTRYAG 1 cut(s) 469
BisI GCNGC 8 cut(s) 14, 67, 70, 73, 76, 79, 472, 812
BlsI GCNGC 8 cut(s) 15, 68, 71, 74, 77, 80, 473, 813
Bme1390I CCNGG 3 cut(s) 228, 570, 805
Bme18I GGWCC 1 cut(s) 664
BmeT110I CYCGRG 1 cut(s) 842
BmgT120I GGNCC 1 cut(s) 664
BmrFI CCNGG 3 cut(s) 228, 570, 805
BpiI GAAGAC 1 cut(s) 218
BpmI CTGGAG 1 cut(s) 552
BpuEI CTTGAG 1 cut(s) 224
BsaJI CCNNGG 3 cut(s) 44, 227, 660
BsaWI WCCGGW 1 cut(s) 166
BsaXI ACNNNNNCTCC 4 cut(s) 184, 214, 767, 797
Bsc4I CCNNNNNNNGG 1 cut(s) 166
Bse118I RCCGGY 1 cut(s) 366
BseAI TCCGGA 1 cut(s) 166
BseBI CCWGG 3 cut(s) 228, 570, 805
BseDI CCNNGG 3 cut(s) 44, 227, 660
BseLI CCNNNNNNNGG 1 cut(s) 166
BseMII CTCAG 2 cut(s) 65, 732
BseRI GAGGAG 2 cut(s) 210, 662
BseX3I CGGCCG 1 cut(s) 90
BseXI GCAGC 4 cut(s) 25, 87, 483, 823
BsgI GTGCAG 1 cut(s) 140
Bsh1285I CGRYCG 1 cut(s) 93
BshFI GGCC 2 cut(s) 49, 92
BsiEI CGRYCG 1 cut(s) 93
BsiHKAI GWGCWC 1 cut(s) 205
BsiHKCI CYCGRG 1 cut(s) 842
BsiSI CCGG 2 cut(s) 167, 367
BslI CCNNNNNNNGG 1 cut(s) 166
BsmAI GTCTC 3 cut(s) 13, 386, 676
BsmI GAATGC 1 cut(s) 754
BsnI GGCC 2 cut(s) 49, 92
BsoBI CYCGRG 1 cut(s) 842
Bsp1286I GDGCHC 1 cut(s) 205
Bsp13I TCCGGA 1 cut(s) 166
Bsp143I GATC 4 cut(s) 223, 292, 456, 511
BspACI CCGC 5 cut(s) 66, 69, 72, 78, 150
BspANI GGCC 2 cut(s) 49, 92
BspCNI CTCAG 2 cut(s) 64, 733
BspEI TCCGGA 1 cut(s) 166
BspHI TCATGA 1 cut(s) 451
BspMAI CTGCAG 1 cut(s) 473
BspPI GGATC 1 cut(s) 218
BspQI GCTCTTC 2 cut(s) 210, 546
BsrFI RCCGGY 1 cut(s) 366
BssAI RCCGGY 1 cut(s) 366
BssECI CCNNGG 3 cut(s) 44, 227, 660
BssMI GATC 4 cut(s) 223, 292, 456, 511
BssT1I CCWWGG 1 cut(s) 660
Bst2UI CCWGG 3 cut(s) 228, 570, 805
Bst4CI ACNGT 3 cut(s) 217, 425, 800
Bst6I CTCTTC 4 cut(s) 113, 210, 402, 546
BstDEI CTNAG 2 cut(s) 51, 741
BstKTI GATC 4 cut(s) 226, 295, 459, 514
BstMAI GTCTC 3 cut(s) 13, 386, 676
BstMBI GATC 4 cut(s) 223, 292, 456, 511
BstMCI CGRYCG 1 cut(s) 93
BstMWI GCNNNNNNNGC 3 cut(s) 72, 75, 78
BstNI CCWGG 3 cut(s) 228, 570, 805
BstNSI RCATGY 1 cut(s) 834
BstSCI CCNGG 3 cut(s) 226, 568, 803
BstSFI CTRYAG 1 cut(s) 469
BstV1I GCAGC 4 cut(s) 25, 87, 483, 823
BstV2I GAAGAC 1 cut(s) 218
BstX2I RGATCY 1 cut(s) 223
BstYI RGATCY 1 cut(s) 223
BstZI CGGCCG 1 cut(s) 90
BsuRI GGCC 2 cut(s) 49, 92
BtsIMutI CAGTG 1 cut(s) 592
CciI TCATGA 1 cut(s) 451
Cfr10I RCCGGY 1 cut(s) 366
Cfr13I GGNCC 1 cut(s) 664
Csp6I GTAC 3 cut(s) 318, 426, 657
CviAII CATG 6 cut(s) 176, 312, 429, 452, 772, 831
CviQI GTAC 3 cut(s) 318, 426, 657
DdeI CTNAG 2 cut(s) 51, 741
DpnI GATC 4 cut(s) 225, 294, 458, 513
DpnII GATC 4 cut(s) 223, 292, 456, 511
EaeI YGGCCR 1 cut(s) 90
EagI CGGCCG 1 cut(s) 90
Eam1104I CTCTTC 4 cut(s) 113, 210, 402, 546
EarI CTCTTC 4 cut(s) 113, 210, 402, 546
EclXI CGGCCG 1 cut(s) 90
Eco130I CCWWGG 1 cut(s) 660
Eco47I GGWCC 1 cut(s) 664
Eco52I CGGCCG 1 cut(s) 90
Eco57I CTGAAG 3 cut(s) 230, 269, 527
Eco88I CYCGRG 1 cut(s) 842
EcoO109I RGGNCCY 1 cut(s) 664
EcoRII CCWGG 3 cut(s) 226, 568, 803
EcoT14I CCWWGG 1 cut(s) 660
EcoT22I ATGCAT 1 cut(s) 832
ErhI CCWWGG 1 cut(s) 660
FaeI CATG 6 cut(s) 179, 315, 432, 455, 775, 834
FalI AAGNNNNNCTT 4 cut(s) 267, 299, 525, 557
FatI CATG 6 cut(s) 175, 311, 428, 451, 771, 830
FbaI TGATCA 2 cut(s) 292, 511
FblI GTMKAC 1 cut(s) 495
Fnu4HI GCNGC 8 cut(s) 14, 67, 70, 73, 76, 79, 472, 812
Fsp4HI GCNGC 8 cut(s) 14, 67, 70, 73, 76, 79, 472, 812
GluI GCNGC 8 cut(s) 14, 67, 70, 73, 76, 79, 472, 812
GsuI CTGGAG 1 cut(s) 552
HaeIII GGCC 2 cut(s) 49, 92
HapII CCGG 2 cut(s) 167, 367
Hin1II CATG 6 cut(s) 179, 315, 432, 455, 775, 834
HincII GTYRAC 1 cut(s) 364
HindII GTYRAC 1 cut(s) 364
HindIII AAGCTT 1 cut(s) 242
HinfI GANTC 4 cut(s) 5, 55, 394, 766
HpaI GTTAAC 1 cut(s) 364
HpaII CCGG 2 cut(s) 167, 367
HphI GGTGA 2 cut(s) 310, 560
Hpy166II GTNNAC 2 cut(s) 364, 496
Hpy188I TCNGA 4 cut(s) 54, 210, 288, 516
Hpy188III TCNNGA 6 cut(s) 59, 167, 334, 452, 488, 844
Hpy8I GTNNAC 2 cut(s) 364, 496
Hpy99I CGWCG 1 cut(s) 128
HpyAV CCTTC 4 cut(s) 164, 293, 295, 787
HpyCH4III ACNGT 3 cut(s) 217, 425, 800
HpyCH4IV ACGT 2 cut(s) 559, 655
HpyCH4V TGCA 4 cut(s) 157, 471, 555, 830
HpyF10VI GCNNNNNNNGC 3 cut(s) 72, 75, 78
HpyF3I CTNAG 2 cut(s) 51, 741
HpySE526I ACGT 2 cut(s) 559, 655
Hsp92II CATG 6 cut(s) 179, 315, 432, 455, 775, 834
Kpn2I TCCGGA 1 cut(s) 166
Ksp22I TGATCA 2 cut(s) 292, 511
KspAI GTTAAC 1 cut(s) 364
Kzo9I GATC 4 cut(s) 223, 292, 456, 511
LguI GCTCTTC 2 cut(s) 210, 546
LmnI GCTCC 4 cut(s) 34, 571, 649, 775
Lsp1109I GCAGC 4 cut(s) 25, 87, 483, 823
MaeII ACGT 2 cut(s) 559, 655
MaeIII GTNAC 3 cut(s) 217, 277, 595
MalI GATC 4 cut(s) 225, 294, 458, 513
MboI GATC 4 cut(s) 223, 292, 456, 511
MboII GAAGA 9 cut(s) 100, 197, 223, 361, 389, 533, 730, 733, 757
MflI RGATCY 1 cut(s) 223
MhlI GDGCHC 1 cut(s) 205
MluCI AATT 6 cut(s) 380, 403, 444, 579, 669, 819
MlyI GAGTC 1 cut(s) 388
MnlI CCTC 9 cut(s) 48, 54, 60, 188, 191, 349, 640, 697, 801
Mph1103I ATGCAT 1 cut(s) 832
MroI TCCGGA 1 cut(s) 166
MroXI GAANNNNTTC 1 cut(s) 540
MseI TTAA 2 cut(s) 339, 363
MslI CAYNNNNRTG 1 cut(s) 503
MspA1I CMGCKG 2 cut(s) 78, 150
MspI CCGG 2 cut(s) 167, 367
MspR9I CCNGG 3 cut(s) 228, 570, 805
Mva1269I GAATGC 1 cut(s) 754
MvaI CCWGG 3 cut(s) 228, 570, 805
MwoI GCNNNNNNNGC 3 cut(s) 72, 75, 78
NdeII GATC 4 cut(s) 223, 292, 456, 511
NlaIII CATG 6 cut(s) 179, 315, 432, 455, 775, 834
NmeAIII GCCGAG 2 cut(s) 25, 68
NmuCI GTSAC 2 cut(s) 277, 595
NsiI ATGCAT 1 cut(s) 832
NspI RCATGY 1 cut(s) 834
PagI TCATGA 1 cut(s) 451
PciSI GCTCTTC 2 cut(s) 210, 546
PctI GAATGC 1 cut(s) 754
PdmI GAANNNNTTC 1 cut(s) 540
PfeI GAWTC 2 cut(s) 55, 766
PfoI TCCNGGA 1 cut(s) 803
PkrI GCNGC 8 cut(s) 15, 68, 71, 74, 77, 80, 473, 813
PleI GAGTC 1 cut(s) 388
PpsI GAGTC 1 cut(s) 388
PpuMI RGGWCCY 1 cut(s) 664
Psp5II RGGWCCY 1 cut(s) 664
Psp6I CCWGG 3 cut(s) 226, 568, 803
PspGI CCWGG 3 cut(s) 226, 568, 803
PspPI GGNCC 1 cut(s) 664
PspPPI RGGWCCY 1 cut(s) 664
PstI CTGCAG 1 cut(s) 473
PsuI RGATCY 1 cut(s) 223
RsaI GTAC 3 cut(s) 319, 427, 658
RsaNI GTAC 3 cut(s) 318, 426, 657
RseI CAYNNNNRTG 1 cut(s) 503
SapI GCTCTTC 2 cut(s) 210, 546
SaqAI TTAA 2 cut(s) 339, 363
SatI GCNGC 8 cut(s) 14, 67, 70, 73, 76, 79, 472, 812
Sau3AI GATC 4 cut(s) 223, 292, 456, 511
Sau96I GGNCC 1 cut(s) 664
SchI GAGTC 1 cut(s) 388
ScrFI CCNGG 3 cut(s) 228, 570, 805
SduI GDGCHC 1 cut(s) 205
SfcI CTRYAG 1 cut(s) 469
SinI GGWCC 1 cut(s) 664
SmiMI CAYNNNNRTG 1 cut(s) 503
SmlI CTYRAG 1 cut(s) 239
SmoI CTYRAG 1 cut(s) 239
Sse9I AATT 6 cut(s) 380, 403, 444, 579, 669, 819
SsiI CCGC 5 cut(s) 66, 69, 72, 78, 150
StyD4I CCNGG 3 cut(s) 226, 568, 803
StyI CCWWGG 1 cut(s) 660
TaaI ACNGT 3 cut(s) 217, 425, 800
TaiI ACGT 2 cut(s) 562, 658
TasI AATT 6 cut(s) 380, 403, 444, 579, 669, 819
TauI GCSGC 4 cut(s) 69, 72, 75, 81
TfiI GAWTC 2 cut(s) 55, 766
Tru1I TTAA 2 cut(s) 339, 363
Tru9I TTAA 2 cut(s) 339, 363
TscAI CASTG 1 cut(s) 592
TseFI GTSAC 2 cut(s) 277, 595
TseI GCWGC 4 cut(s) 13, 75, 471, 811
Tsp45I GTSAC 2 cut(s) 277, 595
TspDTI ATGAA 4 cut(s) 224, 437, 537, 545
TspGWI ACGGA 1 cut(s) 581
TspRI CASTG 1 cut(s) 592
VpaK11BI GGWCC 1 cut(s) 664
XapI RAATTY 3 cut(s) 380, 444, 579
XceI RCATGY 1 cut(s) 834
XcmI CCANNNNNNNNNTGG 1 cut(s) 136
XmiI GTMKAC 1 cut(s) 495
XmnI GAANNNNTTC 1 cut(s) 540
Zsp2I ATGCAT 1 cut(s) 832
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.