Rroxscaffold_5G00379460

prohibitin homologues

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0015706
Physical Location & Seq
Reverse (-)
59830828 .. 59831903
1076 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00379460.1

Sequence Viewer

Length: 477 bp
ATGGATCTACAGAAGCGGAACGCAAGAGCTCCACAGCCTCGCCGCGGCGGGGGTTTCTCAGCCCAGTCCTCTTTCCTCTTCCATCTAATGGTCATTTTGTTTGTGGTAACCCCTCTCACACGTTTTACGCTCCTCTCTCCTCGCTCTCAAAATAATGACTACGTTTTCGTCTTCGTTGTTTCCATCAAACTCGTTTTCGCCGTCGATTTGTACTGTATCTTTAATTGCATTGGGCTAGGGTTTCGATTTCGAGCTTGTTCTGTACTCGTTGAATTTAGTCATGTTGGCGTTTATTGGAGAGGAGATGCTCTTCTCAAGACTGTTACATATCCGGGGGTTCATCTCAAGTTGCCTATGATATACTTTGAACCTATTCAAGTGACCCTTCAGACTCATCAGTTTTGTGATATTCCATGCGGTACAAAAGATGATGTCATGATTAACATTGAGAAGATAGAGGTTGGGGATATGAGATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Band_7

Protein Analysis

158

Amino Acids

18.04

Weight (kDa)

8.9

Isoelectric Point (pI)

40.0

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 88
AccII CGCG 1 cut(s) 45
AciI CCGC 5 cut(s) 16, 43, 45, 48, 417
AclWI GGATC 1 cut(s) 12
AcsI RAATTY 1 cut(s) 272
AcuI CTGAAG 1 cut(s) 371
AfaI GTAC 3 cut(s) 212, 264, 421
AfiI CCNNNNNNNGG 3 cut(s) 44, 49, 88
AflIII ACRYGT 1 cut(s) 119
AgsI TTSAA 3 cut(s) 272, 368, 377
AluBI AGCT 2 cut(s) 29, 254
AluI AGCT 2 cut(s) 29, 254
Alw21I GWGCWC 1 cut(s) 31
AlwI GGATC 1 cut(s) 12
ApoI RAATTY 1 cut(s) 272
ArsI GACNNNNNNTTYG 2 cut(s) 149, 181
Asp700I GAANNNNTTC 1 cut(s) 372
AsuC2I CCSGG 1 cut(s) 333
BanII GRGCYC 1 cut(s) 31
BbsI GAAGAC 1 cut(s) 163
Bbv12I GWGCWC 1 cut(s) 31
BccI CCATC 2 cut(s) 90, 191
BceAI ACGGC 1 cut(s) 185
BcnI CCSGG 1 cut(s) 333
BfaI CTAG 1 cut(s) 236
BfmI CTRYAG 1 cut(s) 8
BisI GCNGC 2 cut(s) 43, 46
BlsI GCNGC 2 cut(s) 44, 47
Bme1390I CCNGG 1 cut(s) 333
BmrFI CCNGG 1 cut(s) 333
BmrI ACTGGG 1 cut(s) 58
BmsI GCATC 1 cut(s) 295
BmuI ACTGGG 1 cut(s) 58
BpiI GAAGAC 1 cut(s) 163
BpuEI CTTGAG 2 cut(s) 299, 329
BpuMI CCSGG 1 cut(s) 333
BsaJI CCNNGG 2 cut(s) 43, 332
Bsc4I CCNNNNNNNGG 3 cut(s) 44, 49, 88
Bse1I ACTGG 1 cut(s) 64
BseDI CCNNGG 2 cut(s) 43, 332
BseLI CCNNNNNNNGG 3 cut(s) 44, 49, 88
BseMII CTCAG 1 cut(s) 72
BseNI ACTGG 1 cut(s) 64
BseRI GAGGAG 3 cut(s) 122, 129, 315
Bsh1236I CGCG 1 cut(s) 45
BsiHKAI GWGCWC 1 cut(s) 31
BsiSI CCGG 1 cut(s) 332
BslI CCNNNNNNNGG 3 cut(s) 44, 49, 88
Bsp1286I GDGCHC 1 cut(s) 31
Bsp143I GATC 1 cut(s) 4
BspACI CCGC 5 cut(s) 16, 43, 45, 48, 417
BspCNI CTCAG 1 cut(s) 71
BspFNI CGCG 1 cut(s) 45
BspHI TCATGA 1 cut(s) 435
BspPI GGATC 1 cut(s) 12
BspQI GCTCTTC 1 cut(s) 315
BsrI ACTGG 1 cut(s) 64
BssECI CCNNGG 2 cut(s) 43, 332
BssMI GATC 1 cut(s) 4
Bst4CI ACNGT 2 cut(s) 215, 322
Bst6I CTCTTC 2 cut(s) 83, 315
BstDEI CTNAG 1 cut(s) 58
BstDSI CCRYGG 1 cut(s) 43
BstEII GGTNACC 1 cut(s) 106
BstFNI CGCG 1 cut(s) 45
BstKTI GATC 1 cut(s) 7
BstMBI GATC 1 cut(s) 4
BstPI GGTNACC 1 cut(s) 106
BstSCI CCNGG 1 cut(s) 331
BstSFI CTRYAG 1 cut(s) 8
BstUI CGCG 1 cut(s) 45
BstV2I GAAGAC 1 cut(s) 163
BstX2I RGATCY 1 cut(s) 4
BstYI RGATCY 1 cut(s) 4
BtgI CCRYGG 1 cut(s) 43
CciI TCATGA 1 cut(s) 435
Cfr42I CCGCGG 1 cut(s) 46
Csp6I GTAC 3 cut(s) 211, 263, 420
CviAII CATG 3 cut(s) 281, 414, 436
CviJI RGCY 5 cut(s) 29, 37, 62, 235, 254
CviKI_1 RGCY 5 cut(s) 29, 37, 62, 235, 254
CviQI GTAC 3 cut(s) 211, 263, 420
DdeI CTNAG 1 cut(s) 58
DpnI GATC 1 cut(s) 6
DpnII GATC 1 cut(s) 4
Eam1104I CTCTTC 2 cut(s) 83, 315
EarI CTCTTC 2 cut(s) 83, 315
Ecl136II GAGCTC 1 cut(s) 29
Eco24I GRGCYC 1 cut(s) 31
Eco53kI GAGCTC 1 cut(s) 29
Eco57I CTGAAG 1 cut(s) 371
Eco91I GGTNACC 1 cut(s) 106
EcoICRI GAGCTC 1 cut(s) 29
EcoO65I GGTNACC 1 cut(s) 106
EcoT38I GRGCYC 1 cut(s) 31
FaeI CATG 3 cut(s) 284, 417, 439
FaiI YATR 7 cut(s) 282, 328, 356, 361, 415, 437, 470
FalI AAGNNNNNCTT 2 cut(s) 369, 401
FatI CATG 3 cut(s) 280, 413, 435
FauI CCCGC 1 cut(s) 41
Fnu4HI GCNGC 2 cut(s) 43, 46
FriOI GRGCYC 1 cut(s) 31
Fsp4HI GCNGC 2 cut(s) 43, 46
FspBI CTAG 1 cut(s) 236
GluI GCNGC 2 cut(s) 43, 46
HapII CCGG 1 cut(s) 332
Hin1II CATG 3 cut(s) 284, 417, 439
HinfI GANTC 1 cut(s) 391
HpaII CCGG 1 cut(s) 332
Hpy188I TCNGA 1 cut(s) 390
Hpy188III TCNNGA 2 cut(s) 316, 436
Hpy99I CGWCG 1 cut(s) 206
HpyAV CCTTC 1 cut(s) 395
HpyCH4III ACNGT 2 cut(s) 215, 322
HpyCH4IV ACGT 2 cut(s) 121, 162
HpyCH4V TGCA 1 cut(s) 228
HpyF3I CTNAG 1 cut(s) 58
HpySE526I ACGT 2 cut(s) 121, 162
Hsp92II CATG 3 cut(s) 284, 417, 439
KspI CCGCGG 1 cut(s) 46
Kzo9I GATC 1 cut(s) 4
LguI GCTCTTC 1 cut(s) 315
LmnI GCTCC 2 cut(s) 34, 135
LpnPI CCDG 2 cut(s) 77, 345
LweI GCATC 1 cut(s) 295
MaeI CTAG 1 cut(s) 236
MaeII ACGT 2 cut(s) 121, 162
MaeIII GTNAC 3 cut(s) 106, 322, 379
MalI GATC 1 cut(s) 6
MboI GATC 1 cut(s) 4
MboII GAAGA 4 cut(s) 70, 163, 302, 463
MflI RGATCY 1 cut(s) 4
MhlI GDGCHC 1 cut(s) 31
MluCI AATT 2 cut(s) 223, 272
MlyI GAGTC 1 cut(s) 385
MnlI CCTC 8 cut(s) 48, 79, 86, 123, 143, 150, 293, 451
MroXI GAANNNNTTC 1 cut(s) 372
MseI TTAA 2 cut(s) 222, 441
MspA1I CMGCKG 1 cut(s) 45
MspI CCGG 1 cut(s) 332
MspR9I CCNGG 1 cut(s) 333
MvnI CGCG 1 cut(s) 45
NciI CCSGG 1 cut(s) 333
NdeII GATC 1 cut(s) 4
NlaIII CATG 3 cut(s) 284, 417, 439
NmuCI GTSAC 1 cut(s) 379
PagI TCATGA 1 cut(s) 435
PciSI GCTCTTC 1 cut(s) 315
PcsI WCGNNNNNNNCGW 1 cut(s) 198
PdmI GAANNNNTTC 1 cut(s) 372
PflMI CCANNNNNTGG 1 cut(s) 88
PkrI GCNGC 2 cut(s) 44, 47
PleI GAGTC 1 cut(s) 385
PpsI GAGTC 1 cut(s) 385
Psp124BI GAGCTC 1 cut(s) 31
PspEI GGTNACC 1 cut(s) 106
PsuI RGATCY 1 cut(s) 4
RsaI GTAC 3 cut(s) 212, 264, 421
RsaNI GTAC 3 cut(s) 211, 263, 420
SacI GAGCTC 1 cut(s) 31
SacII CCGCGG 1 cut(s) 46
SapI GCTCTTC 1 cut(s) 315
SaqAI TTAA 2 cut(s) 222, 441
SatI GCNGC 2 cut(s) 43, 46
Sau3AI GATC 1 cut(s) 4
SchI GAGTC 1 cut(s) 385
ScrFI CCNGG 1 cut(s) 333
SduI GDGCHC 1 cut(s) 31
SetI ASST 6 cut(s) 31, 124, 165, 256, 373, 462
SfaNI GCATC 1 cut(s) 295
SfcI CTRYAG 1 cut(s) 8
Sfr303I CCGCGG 1 cut(s) 46
SgrBI CCGCGG 1 cut(s) 46
SmlI CTYRAG 2 cut(s) 314, 344
SmoI CTYRAG 2 cut(s) 314, 344
Sse9I AATT 2 cut(s) 223, 272
SsiI CCGC 5 cut(s) 16, 43, 45, 48, 417
SspMI CTAG 1 cut(s) 236
SstI GAGCTC 1 cut(s) 31
StyD4I CCNGG 1 cut(s) 331
TaaI ACNGT 2 cut(s) 215, 322
TaiI ACGT 2 cut(s) 124, 165
TaqI TCGA 3 cut(s) 204, 244, 250
TasI AATT 2 cut(s) 223, 272
TatI WGTACW 2 cut(s) 210, 262
TauI GCSGC 2 cut(s) 45, 48
Tru1I TTAA 2 cut(s) 222, 441
Tru9I TTAA 2 cut(s) 222, 441
TseFI GTSAC 1 cut(s) 379
Tsp45I GTSAC 1 cut(s) 379
TspDTI ATGAA 1 cut(s) 329
Van91I CCANNNNNTGG 1 cut(s) 88
XapI RAATTY 1 cut(s) 272
XmnI GAANNNNTTC 1 cut(s) 372
XspI CTAG 1 cut(s) 236
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.