Rh4AG360700

prohibitin homologues

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4A
OG0015706
Physical Location & Seq
Reverse (-)
67025061 .. 67026963
1903 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4AG360700.1

Sequence Viewer

Length: 522 bp
ATGGATCTACAGCAGCAGAACGCAAGAGCTCCACAGCCTCGCCGCGGCGGCGGTTTCTCGGCCCAGTCCTCTTTCCTCTTCCATCTAATGGTCATTTTGTTTGTGCTAGAAGCCTGTCTGCACCGAGTCCCGGAAGGGGTTCATCTCAAGTTGCCTGTGATATACTTTGAACCTATTCAAGTGACCCTTCAGACTCATCAGTTTTGTGATATTCCATGCGGTACAAAAGATGATGTCATGATTAACATTGAGAAGATAGAGGTTGTTAACCGGCTTCGCAAAGAATACGTGTATGAGACATTAAGGAGTTATGGGACTCAGTATTACTGCTCATATACATGTGTCGTCGTGTGTAGAGAGATCAGTAAGCTCTGCGGCTCACATTCTATTGAAGAGGTTTTTGATCAGATTGATGAAAAGCTGAGAGAAGCTCTTCACGATGATAGTGCGCATTTTGCTCCCGGCATTGAAATCATCAGCGTGCGTGTCACAAGGCCTACTATCCCATGCCAGACAGTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Band_7

Protein Analysis

173

Amino Acids

19.82

Weight (kDa)

5.96

Isoelectric Point (pI)

53.87

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Band_7 PF01145 44 - 169 2.1e-08 SPFH domain / Band 7 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 450
AccB7I CCANNNNNTGG 1 cut(s) 88
AccII CGCG 1 cut(s) 45
AciI CCGC 6 cut(s) 43, 45, 48, 51, 219, 375
AclWI GGATC 1 cut(s) 12
AcuI CTGAAG 1 cut(s) 173
AfaI GTAC 1 cut(s) 223
AfiI CCNNNNNNNGG 4 cut(s) 44, 88, 130, 136
AflIII ACRYGT 2 cut(s) 288, 338
AgsI TTSAA 4 cut(s) 170, 179, 392, 470
AluBI AGCT 4 cut(s) 29, 370, 421, 431
AluI AGCT 4 cut(s) 29, 370, 421, 431
Alw21I GWGCWC 1 cut(s) 31
Alw26I GTCTC 1 cut(s) 290
AlwI GGATC 1 cut(s) 12
AoxI GGCC 2 cut(s) 60, 494
ApeKI GCWGC 1 cut(s) 13
Asp700I GAANNNNTTC 3 cut(s) 138, 174, 432
AspLEI GCGC 1 cut(s) 451
AspS9I GGNCC 1 cut(s) 61
AsuC2I CCSGG 2 cut(s) 131, 462
BanII GRGCYC 1 cut(s) 31
Bbv12I GWGCWC 1 cut(s) 31
BbvI GCAGC 1 cut(s) 25
BccI CCATC 1 cut(s) 90
BcgI CGANNNNNNTGC 2 cut(s) 428, 462
BclI TGATCA 1 cut(s) 403
BcnI CCSGG 2 cut(s) 131, 462
BcoDI GTCTC 1 cut(s) 290
BfaI CTAG 1 cut(s) 107
BfmI CTRYAG 1 cut(s) 8
BglI GCCNNNNNGGC 1 cut(s) 48
BisI GCNGC 5 cut(s) 14, 43, 46, 49, 376
BlsI GCNGC 5 cut(s) 15, 44, 47, 50, 377
Bme1390I CCNGG 2 cut(s) 131, 462
BmgT120I GGNCC 1 cut(s) 61
BmrFI CCNGG 2 cut(s) 131, 462
BmrI ACTGGG 1 cut(s) 58
BmuI ACTGGG 1 cut(s) 58
BplI GAGNNNNNCTC 2 cut(s) 415, 447
BpuEI CTTGAG 1 cut(s) 131
BpuMI CCSGG 2 cut(s) 131, 462
BsaAI YACGTR 1 cut(s) 289
BsaJI CCNNGG 1 cut(s) 43
Bsc4I CCNNNNNNNGG 4 cut(s) 44, 88, 130, 136
Bse118I RCCGGY 1 cut(s) 270
Bse1I ACTGG 1 cut(s) 64
BseDI CCNNGG 1 cut(s) 43
BseLI CCNNNNNNNGG 4 cut(s) 44, 88, 130, 136
BseMII CTCAG 2 cut(s) 332, 413
BseNI ACTGG 1 cut(s) 64
BseXI GCAGC 1 cut(s) 25
BsgI GTGCAG 1 cut(s) 104
Bsh1236I CGCG 1 cut(s) 45
BshFI GGCC 2 cut(s) 62, 496
BsiHKAI GWGCWC 1 cut(s) 31
BsiSI CCGG 3 cut(s) 131, 271, 462
BslFI GGGAC 2 cut(s) 113, 328
BslI CCNNNNNNNGG 4 cut(s) 44, 88, 130, 136
BsmAI GTCTC 1 cut(s) 290
BsmFI GGGAC 2 cut(s) 113, 328
BsnI GGCC 2 cut(s) 62, 496
Bsp1286I GDGCHC 1 cut(s) 31
Bsp143I GATC 3 cut(s) 4, 360, 403
BspACI CCGC 6 cut(s) 43, 45, 48, 51, 219, 375
BspANI GGCC 2 cut(s) 62, 496
BspCNI CTCAG 2 cut(s) 331, 414
BspFNI CGCG 1 cut(s) 45
BspHI TCATGA 1 cut(s) 237
BspPI GGATC 1 cut(s) 12
BspQI GCTCTTC 1 cut(s) 438
BsrFI RCCGGY 1 cut(s) 270
BsrI ACTGG 1 cut(s) 64
BssAI RCCGGY 1 cut(s) 270
BssECI CCNNGG 1 cut(s) 43
BssMI GATC 3 cut(s) 4, 360, 403
Bst4CI ACNGT 1 cut(s) 517
Bst6I CTCTTC 3 cut(s) 83, 387, 438
BstBAI YACGTR 1 cut(s) 289
BstC8I GCNNGC 1 cut(s) 482
BstDEI CTNAG 2 cut(s) 318, 422
BstDSI CCRYGG 1 cut(s) 43
BstFNI CGCG 1 cut(s) 45
BstHHI GCGC 1 cut(s) 451
BstKTI GATC 3 cut(s) 7, 363, 406
BstMAI GTCTC 1 cut(s) 290
BstMBI GATC 3 cut(s) 4, 360, 403
BstMWI GCNNNNNNNGC 2 cut(s) 48, 455
BstNSI RCATGY 1 cut(s) 342
BstSCI CCNGG 2 cut(s) 129, 460
BstSFI CTRYAG 1 cut(s) 8
BstUI CGCG 1 cut(s) 45
BstV1I GCAGC 1 cut(s) 25
BstX2I RGATCY 1 cut(s) 4
BstYI RGATCY 1 cut(s) 4
BsuRI GGCC 2 cut(s) 62, 496
BtgI CCRYGG 1 cut(s) 43
BtsIMutI CAGTG 1 cut(s) 522
Cac8I GCNNGC 1 cut(s) 482
CciI TCATGA 1 cut(s) 237
CfoI GCGC 1 cut(s) 451
Cfr10I RCCGGY 1 cut(s) 270
Cfr13I GGNCC 1 cut(s) 61
Cfr42I CCGCGG 1 cut(s) 46
Csp6I GTAC 1 cut(s) 222
CviAII CATG 4 cut(s) 216, 238, 339, 507
CviQI GTAC 1 cut(s) 222
DdeI CTNAG 2 cut(s) 318, 422
DpnI GATC 3 cut(s) 6, 362, 405
DpnII GATC 3 cut(s) 4, 360, 403
Eam1104I CTCTTC 3 cut(s) 83, 387, 438
EarI CTCTTC 3 cut(s) 83, 387, 438
Ecl136II GAGCTC 1 cut(s) 29
Eco147I AGGCCT 1 cut(s) 496
Eco24I GRGCYC 1 cut(s) 31
Eco53kI GAGCTC 1 cut(s) 29
Eco57I CTGAAG 1 cut(s) 173
EcoICRI GAGCTC 1 cut(s) 29
EcoT38I GRGCYC 1 cut(s) 31
FaeI CATG 4 cut(s) 219, 241, 342, 510
FaiI YATR 9 cut(s) 163, 217, 239, 294, 312, 334, 336, 340, 508
FalI AAGNNNNNCTT 2 cut(s) 171, 203
FaqI GGGAC 2 cut(s) 113, 328
FatI CATG 4 cut(s) 215, 237, 338, 506
FbaI TGATCA 1 cut(s) 403
Fnu4HI GCNGC 5 cut(s) 14, 43, 46, 49, 376
FriOI GRGCYC 1 cut(s) 31
Fsp4HI GCNGC 5 cut(s) 14, 43, 46, 49, 376
FspAI RTGCGCAY 1 cut(s) 450
FspBI CTAG 1 cut(s) 107
FspI TGCGCA 1 cut(s) 450
GlaI GCGC 1 cut(s) 450
GluI GCNGC 5 cut(s) 14, 43, 46, 49, 376
HaeIII GGCC 2 cut(s) 62, 496
HapII CCGG 3 cut(s) 131, 271, 462
HhaI GCGC 1 cut(s) 451
Hin1II CATG 4 cut(s) 219, 241, 342, 510
Hin6I GCGC 1 cut(s) 449
HinP1I GCGC 1 cut(s) 449
HincII GTYRAC 1 cut(s) 268
HindII GTYRAC 1 cut(s) 268
HinfI GANTC 3 cut(s) 126, 193, 316
HpaI GTTAAC 1 cut(s) 268
HpaII CCGG 3 cut(s) 131, 271, 462
Hpy166II GTNNAC 1 cut(s) 268
Hpy188I TCNGA 2 cut(s) 192, 408
Hpy188III TCNNGA 2 cut(s) 238, 437
Hpy8I GTNNAC 1 cut(s) 268
Hpy99I CGWCG 1 cut(s) 350
HpyAV CCTTC 2 cut(s) 128, 197
HpyCH4III ACNGT 1 cut(s) 517
HpyCH4IV ACGT 1 cut(s) 288
HpyCH4V TGCA 1 cut(s) 121
HpyF10VI GCNNNNNNNGC 2 cut(s) 48, 455
HpyF3I CTNAG 2 cut(s) 318, 422
HpySE526I ACGT 1 cut(s) 288
Hsp92II CATG 4 cut(s) 219, 241, 342, 510
HspAI GCGC 1 cut(s) 449
Ksp22I TGATCA 1 cut(s) 403
KspAI GTTAAC 1 cut(s) 268
KspI CCGCGG 1 cut(s) 46
Kzo9I GATC 3 cut(s) 4, 360, 403
LguI GCTCTTC 1 cut(s) 438
LmnI GCTCC 2 cut(s) 34, 463
LpnPI CCDG 6 cut(s) 77, 127, 144, 168, 284, 475
Lsp1109I GCAGC 1 cut(s) 25
MaeI CTAG 1 cut(s) 107
MaeII ACGT 1 cut(s) 288
MaeIII GTNAC 2 cut(s) 181, 487
MalI GATC 3 cut(s) 6, 362, 405
MboI GATC 3 cut(s) 4, 360, 403
MboII GAAGA 4 cut(s) 70, 265, 404, 425
MflI RGATCY 1 cut(s) 4
MhlI GDGCHC 1 cut(s) 31
MlyI GAGTC 3 cut(s) 135, 187, 310
MnlI CCTC 5 cut(s) 48, 79, 86, 253, 388
MroXI GAANNNNTTC 3 cut(s) 138, 174, 432
MseI TTAA 3 cut(s) 243, 267, 302
MslI CAYNNNNRTG 2 cut(s) 337, 479
MspA1I CMGCKG 1 cut(s) 45
MspI CCGG 3 cut(s) 131, 271, 462
MspR9I CCNGG 2 cut(s) 131, 462
MvnI CGCG 1 cut(s) 45
MwoI GCNNNNNNNGC 2 cut(s) 48, 455
NciI CCSGG 2 cut(s) 131, 462
NdeII GATC 3 cut(s) 4, 360, 403
NlaIII CATG 4 cut(s) 219, 241, 342, 510
NmeAIII GCCGAG 1 cut(s) 38
NmuCI GTSAC 2 cut(s) 181, 487
NsbI TGCGCA 1 cut(s) 450
NspI RCATGY 1 cut(s) 342
PagI TCATGA 1 cut(s) 237
PceI AGGCCT 1 cut(s) 496
PciI ACATGT 1 cut(s) 338
PciSI GCTCTTC 1 cut(s) 438
PdmI GAANNNNTTC 3 cut(s) 138, 174, 432
PflMI CCANNNNNTGG 1 cut(s) 88
PfoI TCCNGGA 1 cut(s) 129
PkrI GCNGC 5 cut(s) 15, 44, 47, 50, 377
PleI GAGTC 3 cut(s) 134, 187, 310
PpsI GAGTC 3 cut(s) 134, 187, 310
Ppu21I YACGTR 1 cut(s) 289
PscI ACATGT 1 cut(s) 338
Psp124BI GAGCTC 1 cut(s) 31
PspPI GGNCC 1 cut(s) 61
PsuI RGATCY 1 cut(s) 4
RsaI GTAC 1 cut(s) 223
RsaNI GTAC 1 cut(s) 222
RseI CAYNNNNRTG 2 cut(s) 337, 479
SacI GAGCTC 1 cut(s) 31
SacII CCGCGG 1 cut(s) 46
SapI GCTCTTC 1 cut(s) 438
SaqAI TTAA 3 cut(s) 243, 267, 302
SatI GCNGC 5 cut(s) 14, 43, 46, 49, 376
Sau3AI GATC 3 cut(s) 4, 360, 403
Sau96I GGNCC 1 cut(s) 61
SchI GAGTC 3 cut(s) 135, 187, 310
ScrFI CCNGG 2 cut(s) 131, 462
SduI GDGCHC 1 cut(s) 31
SetI ASST 8 cut(s) 31, 175, 264, 291, 372, 399, 423, 433
SfcI CTRYAG 1 cut(s) 8
Sfr303I CCGCGG 1 cut(s) 46
SgrBI CCGCGG 1 cut(s) 46
SmiMI CAYNNNNRTG 2 cut(s) 337, 479
SmlI CTYRAG 1 cut(s) 146
SmoI CTYRAG 1 cut(s) 146
SseBI AGGCCT 1 cut(s) 496
SsiI CCGC 6 cut(s) 43, 45, 48, 51, 219, 375
SspMI CTAG 1 cut(s) 107
SstI GAGCTC 1 cut(s) 31
StuI AGGCCT 1 cut(s) 496
StyD4I CCNGG 2 cut(s) 129, 460
TaaI ACNGT 1 cut(s) 517
TaiI ACGT 1 cut(s) 291
TauI GCSGC 4 cut(s) 45, 48, 51, 378
Tru1I TTAA 3 cut(s) 243, 267, 302
Tru9I TTAA 3 cut(s) 243, 267, 302
TscAI CASTG 1 cut(s) 522
TseFI GTSAC 2 cut(s) 181, 487
TseI GCWGC 1 cut(s) 13
Tsp45I GTSAC 2 cut(s) 181, 487
TspDTI ATGAA 2 cut(s) 131, 429
TspRI CASTG 1 cut(s) 522
Van91I CCANNNNNTGG 1 cut(s) 88
XceI RCATGY 1 cut(s) 342
XmnI GAANNNNTTC 3 cut(s) 138, 174, 432
XspI CTAG 1 cut(s) 107
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.