Rw0G016500

prohibitin homologues

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Contig00751
OG0015706
Physical Location & Seq
Reverse (-)
344891 .. 346975
2085 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw0G016500.1

Sequence Viewer

Length: 372 bp
ATGGATCTACAGCAGCAGAACGCAAGAGCTCCACAGCCTCTCCGCGGCGGCGGGGTTCATCTCAAGTTGCCTATGATATACTTTGAACCTACTCAAGTGACCCTTCAGACTCATCAGTTTTGTGATATTCCATGCGGTACAAAAGATGATGTCATGATTAACATTGAGAAGATAGAGATTGATGAAAAGCTGAGAGAAGCACTTCACGATGATAGTGCCCATTTTGCTCCCGGCATTGAAATCATCAGCATGCGTGTCACAAGGCCTACTATCCCAGACAGTACTTCACTGAGTAGCTGTGCTCTGCAGGTACCAAAACTGTATGGGAGACATGTGAAAACTGAGGTGATGGAAGGAAGTGCAGAAGAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Band_7

Protein Analysis

123

Amino Acids

13.75

Weight (kDa)

5.3

Isoelectric Point (pI)

56.05

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 298
Acc65I GGTACC 1 cut(s) 310
AccB1I GGYRCC 1 cut(s) 310
AccII CGCG 1 cut(s) 45
AciI CCGC 5 cut(s) 43, 45, 48, 51, 135
AclWI GGATC 1 cut(s) 12
AcuI CTGAAG 1 cut(s) 89
AfaI GTAC 3 cut(s) 139, 283, 312
AfiI CCNNNNNNNGG 1 cut(s) 44
AflIII ACRYGT 1 cut(s) 331
AgsI TTSAA 2 cut(s) 86, 239
AluBI AGCT 3 cut(s) 29, 190, 297
AluI AGCT 3 cut(s) 29, 190, 297
Alw21I GWGCWC 2 cut(s) 31, 304
Alw26I GTCTC 1 cut(s) 322
AlwI GGATC 1 cut(s) 12
AoxI GGCC 1 cut(s) 263
ApeKI GCWGC 1 cut(s) 13
Asp700I GAANNNNTTC 1 cut(s) 201
Asp718I GGTACC 1 cut(s) 310
AsuC2I CCSGG 1 cut(s) 231
AsuHPI GGTGA 1 cut(s) 358
BaeGI GKGCMC 1 cut(s) 220
BanI GGYRCC 1 cut(s) 310
BanII GRGCYC 1 cut(s) 31
Bbv12I GWGCWC 2 cut(s) 31, 304
BbvI GCAGC 1 cut(s) 25
BccI CCATC 1 cut(s) 343
BcgI CGANNNNNNTGC 2 cut(s) 197, 231
BcnI CCSGG 1 cut(s) 231
BcoDI GTCTC 1 cut(s) 322
BfmI CTRYAG 2 cut(s) 8, 305
BfuAI ACCTGC 1 cut(s) 298
BisI GCNGC 3 cut(s) 14, 46, 49
BlsI GCNGC 3 cut(s) 15, 47, 50
BmcAI AGTACT 1 cut(s) 283
Bme1390I CCNGG 1 cut(s) 231
BmiI GGNNCC 1 cut(s) 312
BmrFI CCNGG 1 cut(s) 231
BpuEI CTTGAG 2 cut(s) 47, 78
BpuMI CCSGG 1 cut(s) 231
BsaJI CCNNGG 1 cut(s) 43
BsaXI ACNNNNNCTCC 2 cut(s) 24, 54
Bsc4I CCNNNNNNNGG 1 cut(s) 44
BseDI CCNNGG 1 cut(s) 43
BseLI CCNNNNNNNGG 1 cut(s) 44
BseMII CTCAG 3 cut(s) 182, 281, 333
BseSI GKGCMC 1 cut(s) 220
BseXI GCAGC 1 cut(s) 25
Bsh1236I CGCG 1 cut(s) 45
BshFI GGCC 1 cut(s) 265
BshNI GGYRCC 1 cut(s) 310
BsiHKAI GWGCWC 2 cut(s) 31, 304
BsiSI CCGG 1 cut(s) 231
BslI CCNNNNNNNGG 1 cut(s) 44
BsmAI GTCTC 1 cut(s) 322
BsnI GGCC 1 cut(s) 265
Bsp1286I GDGCHC 3 cut(s) 31, 220, 304
Bsp143I GATC 1 cut(s) 4
BspACI CCGC 5 cut(s) 43, 45, 48, 51, 135
BspANI GGCC 1 cut(s) 265
BspCNI CTCAG 3 cut(s) 183, 282, 334
BspFNI CGCG 1 cut(s) 45
BspHI TCATGA 1 cut(s) 153
BspLI GGNNCC 1 cut(s) 312
BspMAI CTGCAG 1 cut(s) 309
BspMI ACCTGC 1 cut(s) 298
BspPI GGATC 1 cut(s) 12
BspT107I GGYRCC 1 cut(s) 310
BssECI CCNNGG 1 cut(s) 43
BssMI GATC 1 cut(s) 4
Bst4CI ACNGT 2 cut(s) 281, 321
BstC8I GCNNGC 1 cut(s) 251
BstDEI CTNAG 3 cut(s) 191, 290, 342
BstDSI CCRYGG 1 cut(s) 43
BstFNI CGCG 1 cut(s) 45
BstKTI GATC 1 cut(s) 7
BstMAI GTCTC 1 cut(s) 322
BstMBI GATC 1 cut(s) 4
BstMWI GCNNNNNNNGC 1 cut(s) 224
BstNSI RCATGY 2 cut(s) 253, 335
BstSCI CCNGG 1 cut(s) 229
BstSFI CTRYAG 2 cut(s) 8, 305
BstSLI GKGCMC 1 cut(s) 220
BstUI CGCG 1 cut(s) 45
BstV1I GCAGC 1 cut(s) 25
BstX2I RGATCY 1 cut(s) 4
BstYI RGATCY 1 cut(s) 4
BsuRI GGCC 1 cut(s) 265
BtgI CCRYGG 1 cut(s) 43
BtsIMutI CAGTG 1 cut(s) 287
BveI ACCTGC 1 cut(s) 298
Cac8I GCNNGC 1 cut(s) 251
CciI TCATGA 1 cut(s) 153
Cfr42I CCGCGG 1 cut(s) 46
Csp6I GTAC 3 cut(s) 138, 282, 311
CviAII CATG 4 cut(s) 132, 154, 250, 332
CviJI RGCY 5 cut(s) 29, 37, 190, 265, 297
CviKI_1 RGCY 5 cut(s) 29, 37, 190, 265, 297
CviQI GTAC 3 cut(s) 138, 282, 311
DdeI CTNAG 3 cut(s) 191, 290, 342
DpnI GATC 1 cut(s) 6
DpnII GATC 1 cut(s) 4
Ecl136II GAGCTC 1 cut(s) 29
Eco147I AGGCCT 1 cut(s) 265
Eco24I GRGCYC 1 cut(s) 31
Eco53kI GAGCTC 1 cut(s) 29
Eco57I CTGAAG 1 cut(s) 89
EcoICRI GAGCTC 1 cut(s) 29
EcoT38I GRGCYC 1 cut(s) 31
FaeI CATG 4 cut(s) 135, 157, 253, 335
FaiI YATR 7 cut(s) 74, 79, 133, 155, 251, 324, 333
FalI AAGNNNNNCTT 2 cut(s) 87, 119
FatI CATG 4 cut(s) 131, 153, 249, 331
FauI CCCGC 1 cut(s) 44
Fnu4HI GCNGC 3 cut(s) 14, 46, 49
FriOI GRGCYC 1 cut(s) 31
Fsp4HI GCNGC 3 cut(s) 14, 46, 49
GluI GCNGC 3 cut(s) 14, 46, 49
HaeIII GGCC 1 cut(s) 265
HapII CCGG 1 cut(s) 231
Hin1II CATG 4 cut(s) 135, 157, 253, 335
HinfI GANTC 1 cut(s) 109
HpaII CCGG 1 cut(s) 231
HphI GGTGA 1 cut(s) 358
Hpy188I TCNGA 1 cut(s) 108
Hpy188III TCNNGA 2 cut(s) 154, 206
HpyAV CCTTC 2 cut(s) 113, 347
HpyCH4III ACNGT 2 cut(s) 281, 321
HpyCH4V TGCA 2 cut(s) 307, 362
HpyF10VI GCNNNNNNNGC 1 cut(s) 224
HpyF3I CTNAG 3 cut(s) 191, 290, 342
Hsp92II CATG 4 cut(s) 135, 157, 253, 335
KpnI GGTACC 1 cut(s) 314
KspI CCGCGG 1 cut(s) 46
Kzo9I GATC 1 cut(s) 4
LmnI GCTCC 2 cut(s) 34, 232
LpnPI CCDG 3 cut(s) 244, 288, 293
Lsp1109I GCAGC 1 cut(s) 25
MaeIII GTNAC 2 cut(s) 97, 256
MalI GATC 1 cut(s) 6
MboI GATC 1 cut(s) 4
MboII GAAGA 1 cut(s) 181
MflI RGATCY 1 cut(s) 4
MhlI GDGCHC 3 cut(s) 31, 220, 304
MlyI GAGTC 1 cut(s) 103
MnlI CCTC 2 cut(s) 48, 337
MroXI GAANNNNTTC 1 cut(s) 201
MseI TTAA 1 cut(s) 159
MslI CAYNNNNRTG 1 cut(s) 248
MspA1I CMGCKG 1 cut(s) 45
MspI CCGG 1 cut(s) 231
MspR9I CCNGG 1 cut(s) 231
MvnI CGCG 1 cut(s) 45
MwoI GCNNNNNNNGC 1 cut(s) 224
NciI CCSGG 1 cut(s) 231
NdeII GATC 1 cut(s) 4
NlaIII CATG 4 cut(s) 135, 157, 253, 335
NlaIV GGNNCC 1 cut(s) 312
NmuCI GTSAC 2 cut(s) 97, 256
NspI RCATGY 2 cut(s) 253, 335
PaeI GCATGC 1 cut(s) 253
PagI TCATGA 1 cut(s) 153
PceI AGGCCT 1 cut(s) 265
PciI ACATGT 1 cut(s) 331
PdmI GAANNNNTTC 1 cut(s) 201
PkrI GCNGC 3 cut(s) 15, 47, 50
PleI GAGTC 1 cut(s) 103
PpsI GAGTC 1 cut(s) 103
PscI ACATGT 1 cut(s) 331
Psp124BI GAGCTC 1 cut(s) 31
PspN4I GGNNCC 1 cut(s) 312
PstI CTGCAG 1 cut(s) 309
PsuI RGATCY 1 cut(s) 4
RsaI GTAC 3 cut(s) 139, 283, 312
RsaNI GTAC 3 cut(s) 138, 282, 311
RseI CAYNNNNRTG 1 cut(s) 248
SacI GAGCTC 1 cut(s) 31
SacII CCGCGG 1 cut(s) 46
SaqAI TTAA 1 cut(s) 159
SatI GCNGC 3 cut(s) 14, 46, 49
Sau3AI GATC 1 cut(s) 4
ScaI AGTACT 1 cut(s) 283
SchI GAGTC 1 cut(s) 103
ScrFI CCNGG 1 cut(s) 231
SduI GDGCHC 3 cut(s) 31, 220, 304
SetI ASST 6 cut(s) 31, 91, 192, 299, 312, 348
SfcI CTRYAG 2 cut(s) 8, 305
Sfr303I CCGCGG 1 cut(s) 46
SgrBI CCGCGG 1 cut(s) 46
SmiMI CAYNNNNRTG 1 cut(s) 248
SmlI CTYRAG 2 cut(s) 62, 93
SmoI CTYRAG 2 cut(s) 62, 93
SphI GCATGC 1 cut(s) 253
SseBI AGGCCT 1 cut(s) 265
SsiI CCGC 5 cut(s) 43, 45, 48, 51, 135
SstI GAGCTC 1 cut(s) 31
StuI AGGCCT 1 cut(s) 265
StyD4I CCNGG 1 cut(s) 229
TaaI ACNGT 2 cut(s) 281, 321
TatI WGTACW 1 cut(s) 281
TauI GCSGC 2 cut(s) 48, 51
Tru1I TTAA 1 cut(s) 159
Tru9I TTAA 1 cut(s) 159
TscAI CASTG 1 cut(s) 294
TseFI GTSAC 2 cut(s) 97, 256
TseI GCWGC 1 cut(s) 13
Tsp45I GTSAC 2 cut(s) 97, 256
TspDTI ATGAA 2 cut(s) 47, 198
TspRI CASTG 1 cut(s) 294
XceI RCATGY 2 cut(s) 253, 335
XmnI GAANNNNTTC 1 cut(s) 201
ZrmI AGTACT 1 cut(s) 283
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.