Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0019260.1

Orthogroup ID

OG0015706

Physical Location & Seq

Genomic Coordinates Forward (+)

15608 .. 20078

Gene Structure 4471 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0019260.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1167 bp

atggatctacagaagcagaacgcaagagctccacagcctcgcctcggcggcggtttctcggtccagtcctctttcctcttccatctaatggtcattttgtttgtggtaacccctctcacacgttttactctcctctctctcctcgctctcaaaataatgactacgttttcgtcttcgtcgtttccatcaaactcgtttcgcggtcatgttggggtttattggagaggagatactcttcttaaggccgttacatatccgggggttcatctcaagttgcctgtgatatactttgaacctattcaagtgacccttcagactcatcagttttgtgatattccatggggtacaaaagatgatgtcatgattaacattgagaagattgaggttgttaaccggcttcgcaaagactacgtgtatgagacattaaggagttatgggactcagtattactgctcatatgcatgtgtcgtcgtgcgtagagagatcagtaagctctgcggctcacattctattgaagagattgatgaaaagctgagagaagcacttcacgatgatagtgcgcattttgctcccggcattgaaatcatcagcgtgcgtgtcacaaggcctactatcccagatagtgtaagacgcggaacacaccaagtagtggcgccaaaccatggtgtgatatactttgaacctattcaagtgacccttcagactcatcagttttgtgatattccatggggtacaaaagatgatgtcatgattaacattgagaagattgaggttgttaaccggcttcgcaaagactacgtgtatgagacattaaggagttatgggactcagtattactgctcatatgcatgtgtcgtcgtgcgtagagagatcagtaagctctgcggctcacattctattgaagaggtttttgatcagattgatgaaaagctgagagaagcacttcacgatgatagtgcgcattttgctcccggcattgaaatcatcagcgtgcgtgtcacaaggcctactatcccagatagtttgggtgtgctcctcaacctaggttcgaatcccgaagctgtcaaagtagtcagccagacactgtgttgcaatacacagttggagcatttcacataccccgaaggggtttatcttgggcctaagaagcctttgggttcctcttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Band_7

Protein Analysis

388

Amino Acids

44.02

Weight (kDa)

6.7

Isoelectric Point (pI)

44.89

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015706)

Species	Orthologous Gene IDs
malus_domestica	MD16G1164500.v1.1
rosa_chinensis	RchiOBHm_Chr4g0438451
rosa_laevigata	RLG00000006364
rosa_multiflora	Rmu_co8220000.1_g000001 Rmu_sc0002327.1_g000023 Rmu_sc0019260.1_g000002
rosa_roxburghii	Rroxscaffold_5G00379460
rosa_rugosa	Rorug04G0310000.1
rosa_samantha	Rh4AG360700 Rh4BG372000 Rh4BG372100 Rh4CG386000 Rh4CG386100 Rh4DG366800
rosa_wichuraiana	Rw0G006550 Rw0G016500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	2 cut(s)	561, 960
AccB1I	GGYRCC	1 cut(s)	652
AccB7I	CCANNNNNTGG	3 cut(s)	88, 649, 662
AccII	CGCG	2 cut(s)	201, 633
AciI	CCGC	6 cut(s)	48, 51, 201, 498, 633, 885
AclWI	GGATC	1 cut(s)	12
AcuI	CTGAAG	2 cut(s)	296, 683
AcyI	GRCGYC	1 cut(s)	653
AfaI	GTAC	2 cut(s)	346, 733
AfiI	CCNNNNNNNGG	5 cut(s)	44, 88, 649, 662, 1126
AflII	CTTAAG	1 cut(s)	239
AflIII	ACRYGT	3 cut(s)	119, 411, 798
AgsI	TTSAA	8 cut(s)	293, 302, 515, 581, 680, 689, 902, 980
AluBI	AGCT	6 cut(s)	29, 493, 532, 880, 931, 1061
AluI	AGCT	6 cut(s)	29, 493, 532, 880, 931, 1061
Alw21I	GWGCWC	2 cut(s)	31, 1035
Alw26I	GTCTC	2 cut(s)	413, 800
AlwI	GGATC	1 cut(s)	12
AlwNI	CAGNNNCTG	1 cut(s)	1084
AoxI	GGCC	4 cut(s)	243, 605, 1004, 1139
ArsI	GACNNNNNNTTYG	2 cut(s)	151, 183
Asp700I	GAANNNNTTC	4 cut(s)	297, 543, 684, 942
AspA2I	CCTAGG	1 cut(s)	1042
AspLEI	GCGC	3 cut(s)	562, 655, 961
AspS9I	GGNCC	2 cut(s)	61, 1139
AsuC2I	CCSGG	3 cut(s)	258, 573, 972
AsuII	TTCGAA	1 cut(s)	1049
AvaII	GGWCC	1 cut(s)	61
AvrII	CCTAGG	1 cut(s)	1042
BanI	GGYRCC	1 cut(s)	652
BanII	GRGCYC	1 cut(s)	31
BbsI	GAAGAC	1 cut(s)	165
Bbv12I	GWGCWC	2 cut(s)	31, 1035
BccI	CCATC	2 cut(s)	90, 193
BceAI	ACGGC	1 cut(s)	230
BcgI	CGANNNNNNTGC	4 cut(s)	539, 573, 938, 972
BclI	TGATCA	1 cut(s)	913
BcnI	CCSGG	3 cut(s)	258, 573, 972
BcoDI	GTCTC	2 cut(s)	413, 800
BfaI	CTAG	1 cut(s)	1043
BfmI	CTRYAG	1 cut(s)	8
BfoI	RGCGCY	1 cut(s)	656
BfrI	CTTAAG	1 cut(s)	239
BglI	GCCNNNNNGGC	1 cut(s)	48
BisI	GCNGC	3 cut(s)	49, 499, 886
BlnI	CCTAGG	1 cut(s)	1042
BlsI	GCNGC	3 cut(s)	50, 500, 887
Bme1390I	CCNGG	3 cut(s)	258, 573, 972
Bme18I	GGWCC	1 cut(s)	61
BmgT120I	GGNCC	2 cut(s)	61, 1139
BmiI	GGNNCC	2 cut(s)	654, 1159
BmrFI	CCNGG	3 cut(s)	258, 573, 972
BpiI	GAAGAC	1 cut(s)	165
Bpu14I	TTCGAA	1 cut(s)	1049
BpuEI	CTTGAG	1 cut(s)	254
BpuMI	CCSGG	3 cut(s)	258, 573, 972
BsaAI	YACGTR	2 cut(s)	412, 799
BsaHI	GRCGYC	1 cut(s)	653
BsaJI	CCNNGG	6 cut(s)	43, 257, 338, 661, 725, 1042
Bsc4I	CCNNNNNNNGG	5 cut(s)	44, 88, 649, 662, 1126
Bse118I	RCCGGY	2 cut(s)	393, 780
Bse1I	ACTGG	1 cut(s)	64
BseDI	CCNNGG	6 cut(s)	43, 257, 338, 661, 725, 1042
BseLI	CCNNNNNNNGG	5 cut(s)	44, 88, 649, 662, 1126
BseMII	CTCAG	4 cut(s)	455, 524, 842, 923
BseNI	ACTGG	1 cut(s)	64
BseRI	GAGGAG	4 cut(s)	122, 131, 240, 1025
Bsh1236I	CGCG	2 cut(s)	201, 633
BshFI	GGCC	4 cut(s)	245, 607, 1006, 1141
BshNI	GGYRCC	1 cut(s)	652
BsiHKAI	GWGCWC	2 cut(s)	31, 1035
BsiSI	CCGG	5 cut(s)	257, 394, 573, 781, 972
BslFI	GGGAC	2 cut(s)	451, 838
BslI	CCNNNNNNNGG	5 cut(s)	44, 88, 649, 662, 1126
BsmAI	GTCTC	2 cut(s)	413, 800
BsmFI	GGGAC	2 cut(s)	451, 838
BsnI	GGCC	4 cut(s)	245, 607, 1006, 1141
Bsp119I	TTCGAA	1 cut(s)	1049
Bsp1286I	GDGCHC	2 cut(s)	31, 1035
Bsp143I	GATC	4 cut(s)	4, 483, 870, 913
Bsp19I	CCATGG	3 cut(s)	338, 661, 725
BspACI	CCGC	6 cut(s)	48, 51, 201, 498, 633, 885
BspANI	GGCC	4 cut(s)	245, 607, 1006, 1141
BspCNI	CTCAG	4 cut(s)	454, 525, 841, 924
BspFNI	CGCG	2 cut(s)	201, 633
BspHI	TCATGA	2 cut(s)	360, 747
BspLI	GGNNCC	2 cut(s)	654, 1159
BspPI	GGATC	1 cut(s)	12
BspT104I	TTCGAA	1 cut(s)	1049
BspT107I	GGYRCC	1 cut(s)	652
BspTI	CTTAAG	1 cut(s)	239
BsrFI	RCCGGY	2 cut(s)	393, 780
BsrI	ACTGG	1 cut(s)	64
BssAI	RCCGGY	2 cut(s)	393, 780
BssECI	CCNNGG	6 cut(s)	43, 257, 338, 661, 725, 1042
BssMI	GATC	4 cut(s)	4, 483, 870, 913
BssNI	GRCGYC	1 cut(s)	653
BssT1I	CCWWGG	4 cut(s)	338, 661, 725, 1042
Bst4CI	ACNGT	2 cut(s)	1086, 1101
Bst6I	CTCTTC	4 cut(s)	83, 240, 510, 897
BstACI	GRCGYC	1 cut(s)	653
BstAFI	CTTAAG	1 cut(s)	239
BstBAI	YACGTR	2 cut(s)	412, 799
BstBI	TTCGAA	1 cut(s)	1049
BstC8I	GCNNGC	2 cut(s)	593, 992
BstDEI	CTNAG	5 cut(s)	441, 533, 828, 932, 1143
BstDSI	CCRYGG	3 cut(s)	338, 661, 725
BstEII	GGTNACC	1 cut(s)	106
BstFNI	CGCG	2 cut(s)	201, 633
BstH2I	RGCGCY	1 cut(s)	656
BstHHI	GCGC	3 cut(s)	562, 655, 961
BstKTI	GATC	4 cut(s)	7, 486, 873, 916
BstMAI	GTCTC	2 cut(s)	413, 800
BstMBI	GATC	4 cut(s)	4, 483, 870, 913
BstMWI	GCNNNNNNNGC	4 cut(s)	48, 566, 965, 1147
BstNSI	RCATGY	2 cut(s)	465, 852
BstPI	GGTNACC	1 cut(s)	106
BstSCI	CCNGG	3 cut(s)	256, 571, 970
BstSFI	CTRYAG	1 cut(s)	8
BstUI	CGCG	2 cut(s)	201, 633
BstV2I	GAAGAC	1 cut(s)	165
BstX2I	RGATCY	1 cut(s)	4
BstYI	RGATCY	1 cut(s)	4
BsuRI	GGCC	4 cut(s)	245, 607, 1006, 1141
BtgI	CCRYGG	3 cut(s)	338, 661, 725
BtsIMutI	CAGTG	1 cut(s)	1082
Cac8I	GCNNGC	2 cut(s)	593, 992
CaiI	CAGNNNCTG	1 cut(s)	1084
CciI	TCATGA	2 cut(s)	360, 747
CfoI	GCGC	3 cut(s)	562, 655, 961
Cfr10I	RCCGGY	2 cut(s)	393, 780
Cfr13I	GGNCC	2 cut(s)	61, 1139
CseI	GACGC	1 cut(s)	639
Csp6I	GTAC	2 cut(s)	345, 732
CviAII	CATG	8 cut(s)	206, 339, 361, 462, 662, 726, 748, 849
CviQI	GTAC	2 cut(s)	345, 732
DdeI	CTNAG	5 cut(s)	441, 533, 828, 932, 1143
DinI	GGCGCC	1 cut(s)	654
DpnI	GATC	4 cut(s)	6, 485, 872, 915
DpnII	GATC	4 cut(s)	4, 483, 870, 913
Eam1104I	CTCTTC	4 cut(s)	83, 240, 510, 897
EarI	CTCTTC	4 cut(s)	83, 240, 510, 897
Ecl136II	GAGCTC	1 cut(s)	29
Eco130I	CCWWGG	4 cut(s)	338, 661, 725, 1042
Eco147I	AGGCCT	2 cut(s)	607, 1006
Eco24I	GRGCYC	1 cut(s)	31
Eco47I	GGWCC	1 cut(s)	61
Eco53kI	GAGCTC	1 cut(s)	29
Eco57I	CTGAAG	2 cut(s)	296, 683
Eco91I	GGTNACC	1 cut(s)	106
EcoICRI	GAGCTC	1 cut(s)	29
EcoO65I	GGTNACC	1 cut(s)	106
EcoT14I	CCWWGG	4 cut(s)	338, 661, 725, 1042
EcoT22I	ATGCAT	2 cut(s)	463, 850
EcoT38I	GRGCYC	1 cut(s)	31
EgeI	GGCGCC	1 cut(s)	654
EheI	GGCGCC	1 cut(s)	654
ErhI	CCWWGG	4 cut(s)	338, 661, 725, 1042
FaeI	CATG	8 cut(s)	209, 342, 364, 465, 665, 729, 751, 852
FalI	AAGNNNNNCTT	4 cut(s)	294, 326, 681, 713
FaqI	GGGAC	2 cut(s)	451, 838
FatI	CATG	8 cut(s)	205, 338, 360, 461, 661, 725, 747, 848
FauNDI	CATATG	2 cut(s)	457, 844
FbaI	TGATCA	1 cut(s)	913
Fnu4HI	GCNGC	3 cut(s)	49, 499, 886
FriOI	GRGCYC	1 cut(s)	31
Fsp4HI	GCNGC	3 cut(s)	49, 499, 886
FspAI	RTGCGCAY	2 cut(s)	561, 960
FspBI	CTAG	1 cut(s)	1043
FspI	TGCGCA	2 cut(s)	561, 960
GlaI	GCGC	3 cut(s)	561, 654, 960
GluI	GCNGC	3 cut(s)	49, 499, 886
HaeII	RGCGCY	1 cut(s)	656
HaeIII	GGCC	4 cut(s)	245, 607, 1006, 1141
HapII	CCGG	5 cut(s)	257, 394, 573, 781, 972
HgaI	GACGC	1 cut(s)	639
HhaI	GCGC	3 cut(s)	562, 655, 961
Hin1I	GRCGYC	1 cut(s)	653
Hin1II	CATG	8 cut(s)	209, 342, 364, 465, 665, 729, 751, 852
Hin6I	GCGC	3 cut(s)	560, 653, 959
HinP1I	GCGC	3 cut(s)	560, 653, 959
HincII	GTYRAC	2 cut(s)	391, 778
HindII	GTYRAC	2 cut(s)	391, 778
HinfI	GANTC	5 cut(s)	316, 439, 703, 826, 1051
HpaI	GTTAAC	2 cut(s)	391, 778
HpaII	CCGG	5 cut(s)	257, 394, 573, 781, 972
Hpy166II	GTNNAC	2 cut(s)	391, 778
Hpy188I	TCNGA	3 cut(s)	315, 702, 918
Hpy188III	TCNNGA	6 cut(s)	361, 548, 748, 947, 1055, 1164
Hpy8I	GTNNAC	2 cut(s)	391, 778
Hpy99I	CGWCG	3 cut(s)	181, 473, 860
HpyAV	CCTTC	3 cut(s)	320, 707, 1118
HpyCH4III	ACNGT	2 cut(s)	1086, 1101
HpyCH4IV	ACGT	4 cut(s)	121, 164, 411, 798
HpyCH4V	TGCA	3 cut(s)	461, 848, 1092
HpyF10VI	GCNNNNNNNGC	4 cut(s)	48, 566, 965, 1147
HpyF3I	CTNAG	5 cut(s)	441, 533, 828, 932, 1143
HpySE526I	ACGT	4 cut(s)	121, 164, 411, 798
Hsp92I	GRCGYC	1 cut(s)	653
Hsp92II	CATG	8 cut(s)	209, 342, 364, 465, 665, 729, 751, 852
HspAI	GCGC	3 cut(s)	560, 653, 959
KasI	GGCGCC	1 cut(s)	652
Ksp22I	TGATCA	1 cut(s)	913
KspAI	GTTAAC	2 cut(s)	391, 778
Kzo9I	GATC	4 cut(s)	4, 483, 870, 913
LmnI	GCTCC	5 cut(s)	34, 574, 973, 1038, 1105
MaeI	CTAG	1 cut(s)	1043
MaeII	ACGT	4 cut(s)	121, 164, 411, 798
MaeIII	GTNAC	6 cut(s)	106, 247, 304, 598, 691, 997
MalI	GATC	4 cut(s)	6, 485, 872, 915
MboI	GATC	4 cut(s)	4, 483, 870, 913
MboII	GAAGA	7 cut(s)	70, 165, 227, 388, 527, 775, 914
MflI	RGATCY	1 cut(s)	4
MhlI	GDGCHC	2 cut(s)	31, 1035
Mly113I	GGCGCC	1 cut(s)	653
MlyI	GAGTC	4 cut(s)	310, 433, 697, 820
MmeI	TCCRAC	1 cut(s)	1083
Mph1103I	ATGCAT	2 cut(s)	463, 850
MroXI	GAANNNNTTC	4 cut(s)	297, 543, 684, 942
MseI	TTAA	7 cut(s)	240, 366, 390, 425, 753, 777, 812
MslI	CAYNNNNRTG	4 cut(s)	460, 590, 847, 989
MspCI	CTTAAG	1 cut(s)	239
MspI	CCGG	5 cut(s)	257, 394, 573, 781, 972
MspR9I	CCNGG	3 cut(s)	258, 573, 972
MvnI	CGCG	2 cut(s)	201, 633
MwoI	GCNNNNNNNGC	4 cut(s)	48, 566, 965, 1147
NarI	GGCGCC	1 cut(s)	653
NciI	CCSGG	3 cut(s)	258, 573, 972
NcoI	CCATGG	3 cut(s)	338, 661, 725
NdeI	CATATG	2 cut(s)	457, 844
NdeII	GATC	4 cut(s)	4, 483, 870, 913
NlaIII	CATG	8 cut(s)	209, 342, 364, 465, 665, 729, 751, 852
NlaIV	GGNNCC	2 cut(s)	654, 1159
NmeAIII	GCCGAG	1 cut(s)	24
NmuCI	GTSAC	4 cut(s)	304, 598, 691, 997
NsbI	TGCGCA	2 cut(s)	561, 960
NsiI	ATGCAT	2 cut(s)	463, 850
NspI	RCATGY	2 cut(s)	465, 852
NspV	TTCGAA	1 cut(s)	1049
PagI	TCATGA	2 cut(s)	360, 747
PceI	AGGCCT	2 cut(s)	607, 1006
PcsI	WCGNNNNNNNCGW	1 cut(s)	176
PdmI	GAANNNNTTC	4 cut(s)	297, 543, 684, 942
PfeI	GAWTC	1 cut(s)	1051
PflMI	CCANNNNNTGG	3 cut(s)	88, 649, 662
PkrI	GCNGC	3 cut(s)	50, 500, 887
PleI	GAGTC	4 cut(s)	310, 433, 697, 820
PluTI	GGCGCC	1 cut(s)	656
PpsI	GAGTC	4 cut(s)	310, 433, 697, 820
Ppu21I	YACGTR	2 cut(s)	412, 799
Psp124BI	GAGCTC	1 cut(s)	31
PspEI	GGTNACC	1 cut(s)	106
PspN4I	GGNNCC	2 cut(s)	654, 1159
PspPI	GGNCC	2 cut(s)	61, 1139
PstNI	CAGNNNCTG	1 cut(s)	1084
PsuI	RGATCY	1 cut(s)	4
RsaI	GTAC	2 cut(s)	346, 733
RsaNI	GTAC	2 cut(s)	345, 732
RseI	CAYNNNNRTG	4 cut(s)	460, 590, 847, 989
SacI	GAGCTC	1 cut(s)	31
SaqAI	TTAA	7 cut(s)	240, 366, 390, 425, 753, 777, 812
SatI	GCNGC	3 cut(s)	49, 499, 886
Sau3AI	GATC	4 cut(s)	4, 483, 870, 913
Sau96I	GGNCC	2 cut(s)	61, 1139
SchI	GAGTC	4 cut(s)	310, 433, 697, 820
ScrFI	CCNGG	3 cut(s)	258, 573, 972
SduI	GDGCHC	2 cut(s)	31, 1035
SfcI	CTRYAG	1 cut(s)	8
SfoI	GGCGCC	1 cut(s)	654
SfuI	TTCGAA	1 cut(s)	1049
SinI	GGWCC	1 cut(s)	61
SmiMI	CAYNNNNRTG	4 cut(s)	460, 590, 847, 989
SmlI	CTYRAG	2 cut(s)	239, 269
SmoI	CTYRAG	2 cut(s)	239, 269
SseBI	AGGCCT	2 cut(s)	607, 1006
SsiI	CCGC	6 cut(s)	48, 51, 201, 498, 633, 885
SspDI	GGCGCC	1 cut(s)	652
SspMI	CTAG	1 cut(s)	1043
SstI	GAGCTC	1 cut(s)	31
StuI	AGGCCT	2 cut(s)	607, 1006
StyD4I	CCNGG	3 cut(s)	256, 571, 970
StyI	CCWWGG	4 cut(s)	338, 661, 725, 1042
TaaI	ACNGT	2 cut(s)	1086, 1101
TaiI	ACGT	4 cut(s)	124, 167, 414, 801
TaqI	TCGA	1 cut(s)	1049
TaqII	GACCGA	1 cut(s)	49
TauI	GCSGC	3 cut(s)	51, 501, 888
TfiI	GAWTC	1 cut(s)	1051
Tru1I	TTAA	7 cut(s)	240, 366, 390, 425, 753, 777, 812
Tru9I	TTAA	7 cut(s)	240, 366, 390, 425, 753, 777, 812
TscAI	CASTG	1 cut(s)	1089
TseFI	GTSAC	4 cut(s)	304, 598, 691, 997
Tsp45I	GTSAC	4 cut(s)	304, 598, 691, 997
TspDTI	ATGAA	3 cut(s)	254, 540, 939
TspRI	CASTG	1 cut(s)	1089
Van91I	CCANNNNNTGG	3 cut(s)	88, 649, 662
Vha464I	CTTAAG	1 cut(s)	239
VpaK11BI	GGWCC	1 cut(s)	61
XceI	RCATGY	2 cut(s)	465, 852
XmaJI	CCTAGG	1 cut(s)	1042
XmnI	GAANNNNTTC	4 cut(s)	297, 543, 684, 942
XspI	CTAG	1 cut(s)	1043
Zsp2I	ATGCAT	2 cut(s)	463, 850

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.