Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4D

Orthogroup ID

OG0015706

Physical Location & Seq

Genomic Coordinates Reverse (-)

58691699 .. 58693249

Gene Structure 1551 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4DG366800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 456 bp

ATGGATCTACAGCAGCAGAACGCAAGAGCTCCACAGCCTCGCCGCGGCGGCGGTTTCTCGGCCCAGTCCTCTTTCCTCTTCCATCTAATGGTCATTTTGTTTGTGCTAGAAGCCTGTCTGCACCGAGTCCCGGAAGGGGTTCATCTCAAGTTGCCTGTGATATACTTTGAACCTATTCAAGTGACCCTTCAGACTCATCAGTTTTGTGATATTCCATGCGGTACAAAAGATGATGTCATGATTAACATTGAGAAGATAGAGGTTGTTAACCGGCTTCGCAAAGAATACGTAGAGATCAGTAAGCTCTGCGGCTCACATTCTATTGAAGAGGTTTTTGATCAGATTGATGAAAAGCTGAGAGAAGCTCTTCACGATGATAGTGCGCATTTTGCTCCCGGCATTGAAATCATCAGCGTGCGTGTCACAAGGCCTACTATCCCATGCCAGACAGTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Band_7

Protein Analysis

151

Amino Acids

17.18

Weight (kDa)

5.77

Isoelectric Point (pI)

59.44

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0015706)

Species	Orthologous Gene IDs
malus_domestica	MD16G1164500.v1.1
rosa_chinensis	RchiOBHm_Chr4g0438451
rosa_laevigata	RLG00000006364
rosa_multiflora	Rmu_co8220000.1_g000001 Rmu_sc0002327.1_g000023 Rmu_sc0019260.1_g000002
rosa_roxburghii	Rroxscaffold_5G00379460
rosa_rugosa	Rorug04G0310000.1
rosa_samantha	Rh4AG360700 Rh4BG372000 Rh4BG372100 Rh4CG386000 Rh4CG386100 Rh4DG366800
rosa_wichuraiana	Rw0G006550 Rw0G016500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	384
AccB7I	CCANNNNNTGG	1 cut(s)	88
AccII	CGCG	1 cut(s)	45
AciI	CCGC	6 cut(s)	43, 45, 48, 51, 219, 309
AclWI	GGATC	1 cut(s)	12
AcuI	CTGAAG	1 cut(s)	173
AfaI	GTAC	1 cut(s)	223
AfiI	CCNNNNNNNGG	4 cut(s)	44, 88, 130, 136
AgsI	TTSAA	4 cut(s)	170, 179, 326, 404
AluBI	AGCT	4 cut(s)	29, 304, 355, 365
AluI	AGCT	4 cut(s)	29, 304, 355, 365
Alw21I	GWGCWC	1 cut(s)	31
AlwI	GGATC	1 cut(s)	12
AoxI	GGCC	2 cut(s)	60, 428
ApeKI	GCWGC	1 cut(s)	13
Asp700I	GAANNNNTTC	3 cut(s)	138, 174, 366
AspLEI	GCGC	1 cut(s)	385
AspS9I	GGNCC	1 cut(s)	61
AsuC2I	CCSGG	2 cut(s)	131, 396
BanII	GRGCYC	1 cut(s)	31
Bbv12I	GWGCWC	1 cut(s)	31
BbvI	GCAGC	1 cut(s)	25
BccI	CCATC	1 cut(s)	90
BcgI	CGANNNNNNTGC	2 cut(s)	362, 396
BclI	TGATCA	1 cut(s)	337
BcnI	CCSGG	2 cut(s)	131, 396
BfaI	CTAG	1 cut(s)	107
BfmI	CTRYAG	1 cut(s)	8
BglI	GCCNNNNNGGC	1 cut(s)	48
BisI	GCNGC	5 cut(s)	14, 43, 46, 49, 310
BlsI	GCNGC	5 cut(s)	15, 44, 47, 50, 311
Bme1390I	CCNGG	2 cut(s)	131, 396
BmgT120I	GGNCC	1 cut(s)	61
BmrFI	CCNGG	2 cut(s)	131, 396
BmrI	ACTGGG	1 cut(s)	58
BmuI	ACTGGG	1 cut(s)	58
BplI	GAGNNNNNCTC	2 cut(s)	349, 381
BpuEI	CTTGAG	1 cut(s)	131
BpuMI	CCSGG	2 cut(s)	131, 396
BsaAI	YACGTR	1 cut(s)	289
BsaJI	CCNNGG	1 cut(s)	43
Bsc4I	CCNNNNNNNGG	4 cut(s)	44, 88, 130, 136
Bse118I	RCCGGY	1 cut(s)	270
Bse1I	ACTGG	1 cut(s)	64
BseDI	CCNNGG	1 cut(s)	43
BseLI	CCNNNNNNNGG	4 cut(s)	44, 88, 130, 136
BseMII	CTCAG	1 cut(s)	347
BseNI	ACTGG	1 cut(s)	64
BseXI	GCAGC	1 cut(s)	25
BsgI	GTGCAG	1 cut(s)	104
Bsh1236I	CGCG	1 cut(s)	45
BshFI	GGCC	2 cut(s)	62, 430
BsiHKAI	GWGCWC	1 cut(s)	31
BsiSI	CCGG	3 cut(s)	131, 271, 396
BslFI	GGGAC	1 cut(s)	113
BslI	CCNNNNNNNGG	4 cut(s)	44, 88, 130, 136
BsmFI	GGGAC	1 cut(s)	113
BsnI	GGCC	2 cut(s)	62, 430
Bsp1286I	GDGCHC	1 cut(s)	31
Bsp143I	GATC	3 cut(s)	4, 294, 337
BspACI	CCGC	6 cut(s)	43, 45, 48, 51, 219, 309
BspANI	GGCC	2 cut(s)	62, 430
BspCNI	CTCAG	1 cut(s)	348
BspFNI	CGCG	1 cut(s)	45
BspHI	TCATGA	1 cut(s)	237
BspPI	GGATC	1 cut(s)	12
BspQI	GCTCTTC	1 cut(s)	372
BsrFI	RCCGGY	1 cut(s)	270
BsrI	ACTGG	1 cut(s)	64
BssAI	RCCGGY	1 cut(s)	270
BssECI	CCNNGG	1 cut(s)	43
BssMI	GATC	3 cut(s)	4, 294, 337
Bst4CI	ACNGT	1 cut(s)	451
Bst6I	CTCTTC	3 cut(s)	83, 321, 372
BstBAI	YACGTR	1 cut(s)	289
BstC8I	GCNNGC	1 cut(s)	416
BstDEI	CTNAG	1 cut(s)	356
BstDSI	CCRYGG	1 cut(s)	43
BstFNI	CGCG	1 cut(s)	45
BstHHI	GCGC	1 cut(s)	385
BstKTI	GATC	3 cut(s)	7, 297, 340
BstMBI	GATC	3 cut(s)	4, 294, 337
BstMWI	GCNNNNNNNGC	2 cut(s)	48, 389
BstSCI	CCNGG	2 cut(s)	129, 394
BstSFI	CTRYAG	1 cut(s)	8
BstSNI	TACGTA	1 cut(s)	289
BstUI	CGCG	1 cut(s)	45
BstV1I	GCAGC	1 cut(s)	25
BstX2I	RGATCY	1 cut(s)	4
BstYI	RGATCY	1 cut(s)	4
BsuRI	GGCC	2 cut(s)	62, 430
BtgI	CCRYGG	1 cut(s)	43
BtsIMutI	CAGTG	1 cut(s)	456
Cac8I	GCNNGC	1 cut(s)	416
CciI	TCATGA	1 cut(s)	237
CfoI	GCGC	1 cut(s)	385
Cfr10I	RCCGGY	1 cut(s)	270
Cfr13I	GGNCC	1 cut(s)	61
Cfr42I	CCGCGG	1 cut(s)	46
Csp6I	GTAC	1 cut(s)	222
CviAII	CATG	3 cut(s)	216, 238, 441
CviQI	GTAC	1 cut(s)	222
DdeI	CTNAG	1 cut(s)	356
DpnI	GATC	3 cut(s)	6, 296, 339
DpnII	GATC	3 cut(s)	4, 294, 337
Eam1104I	CTCTTC	3 cut(s)	83, 321, 372
EarI	CTCTTC	3 cut(s)	83, 321, 372
Ecl136II	GAGCTC	1 cut(s)	29
Eco105I	TACGTA	1 cut(s)	289
Eco147I	AGGCCT	1 cut(s)	430
Eco24I	GRGCYC	1 cut(s)	31
Eco53kI	GAGCTC	1 cut(s)	29
Eco57I	CTGAAG	1 cut(s)	173
EcoICRI	GAGCTC	1 cut(s)	29
EcoT38I	GRGCYC	1 cut(s)	31
FaeI	CATG	3 cut(s)	219, 241, 444
FaiI	YATR	4 cut(s)	163, 217, 239, 442
FalI	AAGNNNNNCTT	2 cut(s)	171, 203
FaqI	GGGAC	1 cut(s)	113
FatI	CATG	3 cut(s)	215, 237, 440
FbaI	TGATCA	1 cut(s)	337
Fnu4HI	GCNGC	5 cut(s)	14, 43, 46, 49, 310
FriOI	GRGCYC	1 cut(s)	31
Fsp4HI	GCNGC	5 cut(s)	14, 43, 46, 49, 310
FspAI	RTGCGCAY	1 cut(s)	384
FspBI	CTAG	1 cut(s)	107
FspI	TGCGCA	1 cut(s)	384
GlaI	GCGC	1 cut(s)	384
GluI	GCNGC	5 cut(s)	14, 43, 46, 49, 310
HaeIII	GGCC	2 cut(s)	62, 430
HapII	CCGG	3 cut(s)	131, 271, 396
HhaI	GCGC	1 cut(s)	385
Hin1II	CATG	3 cut(s)	219, 241, 444
Hin6I	GCGC	1 cut(s)	383
HinP1I	GCGC	1 cut(s)	383
HincII	GTYRAC	1 cut(s)	268
HindII	GTYRAC	1 cut(s)	268
HinfI	GANTC	2 cut(s)	126, 193
HpaI	GTTAAC	1 cut(s)	268
HpaII	CCGG	3 cut(s)	131, 271, 396
Hpy166II	GTNNAC	1 cut(s)	268
Hpy188I	TCNGA	2 cut(s)	192, 342
Hpy188III	TCNNGA	2 cut(s)	238, 371
Hpy8I	GTNNAC	1 cut(s)	268
HpyAV	CCTTC	2 cut(s)	128, 197
HpyCH4III	ACNGT	1 cut(s)	451
HpyCH4IV	ACGT	1 cut(s)	288
HpyCH4V	TGCA	1 cut(s)	121
HpyF10VI	GCNNNNNNNGC	2 cut(s)	48, 389
HpyF3I	CTNAG	1 cut(s)	356
HpySE526I	ACGT	1 cut(s)	288
Hsp92II	CATG	3 cut(s)	219, 241, 444
HspAI	GCGC	1 cut(s)	383
Ksp22I	TGATCA	1 cut(s)	337
KspAI	GTTAAC	1 cut(s)	268
KspI	CCGCGG	1 cut(s)	46
Kzo9I	GATC	3 cut(s)	4, 294, 337
LguI	GCTCTTC	1 cut(s)	372
LmnI	GCTCC	2 cut(s)	34, 397
LpnPI	CCDG	6 cut(s)	77, 127, 144, 168, 284, 409
Lsp1109I	GCAGC	1 cut(s)	25
MaeI	CTAG	1 cut(s)	107
MaeII	ACGT	1 cut(s)	288
MaeIII	GTNAC	2 cut(s)	181, 421
MalI	GATC	3 cut(s)	6, 296, 339
MboI	GATC	3 cut(s)	4, 294, 337
MboII	GAAGA	4 cut(s)	70, 265, 338, 359
MflI	RGATCY	1 cut(s)	4
MhlI	GDGCHC	1 cut(s)	31
MlyI	GAGTC	2 cut(s)	135, 187
MnlI	CCTC	5 cut(s)	48, 79, 86, 253, 322
MroXI	GAANNNNTTC	3 cut(s)	138, 174, 366
MseI	TTAA	2 cut(s)	243, 267
MslI	CAYNNNNRTG	1 cut(s)	413
MspA1I	CMGCKG	1 cut(s)	45
MspI	CCGG	3 cut(s)	131, 271, 396
MspR9I	CCNGG	2 cut(s)	131, 396
MvnI	CGCG	1 cut(s)	45
MwoI	GCNNNNNNNGC	2 cut(s)	48, 389
NciI	CCSGG	2 cut(s)	131, 396
NdeII	GATC	3 cut(s)	4, 294, 337
NlaIII	CATG	3 cut(s)	219, 241, 444
NmeAIII	GCCGAG	1 cut(s)	38
NmuCI	GTSAC	2 cut(s)	181, 421
NsbI	TGCGCA	1 cut(s)	384
PagI	TCATGA	1 cut(s)	237
PceI	AGGCCT	1 cut(s)	430
PciSI	GCTCTTC	1 cut(s)	372
PdmI	GAANNNNTTC	3 cut(s)	138, 174, 366
PflMI	CCANNNNNTGG	1 cut(s)	88
PfoI	TCCNGGA	1 cut(s)	129
PkrI	GCNGC	5 cut(s)	15, 44, 47, 50, 311
PleI	GAGTC	2 cut(s)	134, 187
PpsI	GAGTC	2 cut(s)	134, 187
Ppu21I	YACGTR	1 cut(s)	289
Psp124BI	GAGCTC	1 cut(s)	31
PspPI	GGNCC	1 cut(s)	61
PsuI	RGATCY	1 cut(s)	4
RsaI	GTAC	1 cut(s)	223
RsaNI	GTAC	1 cut(s)	222
RseI	CAYNNNNRTG	1 cut(s)	413
SacI	GAGCTC	1 cut(s)	31
SacII	CCGCGG	1 cut(s)	46
SapI	GCTCTTC	1 cut(s)	372
SaqAI	TTAA	2 cut(s)	243, 267
SatI	GCNGC	5 cut(s)	14, 43, 46, 49, 310
Sau3AI	GATC	3 cut(s)	4, 294, 337
Sau96I	GGNCC	1 cut(s)	61
SchI	GAGTC	2 cut(s)	135, 187
ScrFI	CCNGG	2 cut(s)	131, 396
SduI	GDGCHC	1 cut(s)	31
SetI	ASST	8 cut(s)	31, 175, 264, 291, 306, 333, 357, 367
SfcI	CTRYAG	1 cut(s)	8
Sfr303I	CCGCGG	1 cut(s)	46
SgrBI	CCGCGG	1 cut(s)	46
SmiMI	CAYNNNNRTG	1 cut(s)	413
SmlI	CTYRAG	1 cut(s)	146
SmoI	CTYRAG	1 cut(s)	146
SnaBI	TACGTA	1 cut(s)	289
SseBI	AGGCCT	1 cut(s)	430
SsiI	CCGC	6 cut(s)	43, 45, 48, 51, 219, 309
SspMI	CTAG	1 cut(s)	107
SstI	GAGCTC	1 cut(s)	31
StuI	AGGCCT	1 cut(s)	430
StyD4I	CCNGG	2 cut(s)	129, 394
TaaI	ACNGT	1 cut(s)	451
TaiI	ACGT	1 cut(s)	291
TauI	GCSGC	4 cut(s)	45, 48, 51, 312
Tru1I	TTAA	2 cut(s)	243, 267
Tru9I	TTAA	2 cut(s)	243, 267
TscAI	CASTG	1 cut(s)	456
TseFI	GTSAC	2 cut(s)	181, 421
TseI	GCWGC	1 cut(s)	13
Tsp45I	GTSAC	2 cut(s)	181, 421
TspDTI	ATGAA	2 cut(s)	131, 363
TspRI	CASTG	1 cut(s)	456
Van91I	CCANNNNNTGG	1 cut(s)	88
XmnI	GAANNNNTTC	3 cut(s)	138, 174, 366
XspI	CTAG	1 cut(s)	107

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.