Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Contig00245

Orthogroup ID

OG0015706

Physical Location & Seq

Genomic Coordinates Reverse (-)

210711 .. 212766

Gene Structure 2056 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw0G006550.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 339 bp

ATGGATCTACAGCAGCAGAACGCAAGAGCTCCACAGCCTCTCCGCGGCGGCGGGGTTCATCTCAAGTTGCCTATGATATACTTTGAACCTACTCAAGTGACCCTTCAGACTCATCAGTTTTGTGATATTCCATGCGGTACAAAAGATGATGTCATGATTAACATTGAGAAGATAGAGATTGATGAAAAGCTGAGAGAAGCACTTCACGATGATAGTGCCCATTTTGCTCCCGGCATTGAAATCATCAGCATGCGTGTCACAAGGCCTACTATCCCAGACAGTGTAAGACGCGGAACACACCAAGGTACCAAAACTGTATGGGAGACATGTGAAAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Band_7

Protein Analysis

112

Amino Acids

12.71

Weight (kDa)

5.66

Isoelectric Point (pI)

50.25

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015706)

Species	Orthologous Gene IDs
malus_domestica	MD16G1164500.v1.1
rosa_chinensis	RchiOBHm_Chr4g0438451
rosa_laevigata	RLG00000006364
rosa_multiflora	Rmu_co8220000.1_g000001 Rmu_sc0002327.1_g000023 Rmu_sc0019260.1_g000002
rosa_roxburghii	Rroxscaffold_5G00379460
rosa_rugosa	Rorug04G0310000.1
rosa_samantha	Rh4AG360700 Rh4BG372000 Rh4BG372100 Rh4CG386000 Rh4CG386100 Rh4DG366800
rosa_wichuraiana	Rw0G006550 Rw0G016500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	305
AccB1I	GGYRCC	1 cut(s)	305
AccII	CGCG	2 cut(s)	45, 291
AciI	CCGC	6 cut(s)	43, 45, 48, 51, 135, 291
AclWI	GGATC	1 cut(s)	12
AcuI	CTGAAG	1 cut(s)	89
AfaI	GTAC	2 cut(s)	139, 307
AfiI	CCNNNNNNNGG	1 cut(s)	44
AflIII	ACRYGT	1 cut(s)	326
AgsI	TTSAA	2 cut(s)	86, 239
AluBI	AGCT	2 cut(s)	29, 190
AluI	AGCT	2 cut(s)	29, 190
Alw21I	GWGCWC	1 cut(s)	31
Alw26I	GTCTC	1 cut(s)	317
AlwI	GGATC	1 cut(s)	12
AoxI	GGCC	1 cut(s)	263
ApeKI	GCWGC	1 cut(s)	13
Asp700I	GAANNNNTTC	1 cut(s)	201
Asp718I	GGTACC	1 cut(s)	305
AsuC2I	CCSGG	1 cut(s)	231
BaeGI	GKGCMC	1 cut(s)	220
BaeI	ACNNNNGTAYC	2 cut(s)	289, 322
BanI	GGYRCC	1 cut(s)	305
BanII	GRGCYC	1 cut(s)	31
Bbv12I	GWGCWC	1 cut(s)	31
BbvI	GCAGC	1 cut(s)	25
BcgI	CGANNNNNNTGC	2 cut(s)	197, 231
BcnI	CCSGG	1 cut(s)	231
BcoDI	GTCTC	1 cut(s)	317
BfmI	CTRYAG	1 cut(s)	8
BisI	GCNGC	3 cut(s)	14, 46, 49
BlsI	GCNGC	3 cut(s)	15, 47, 50
Bme1390I	CCNGG	1 cut(s)	231
BmiI	GGNNCC	1 cut(s)	307
BmrFI	CCNGG	1 cut(s)	231
BpuEI	CTTGAG	2 cut(s)	47, 78
BpuMI	CCSGG	1 cut(s)	231
BsaJI	CCNNGG	2 cut(s)	43, 301
BsaXI	ACNNNNNCTCC	2 cut(s)	24, 54
Bsc4I	CCNNNNNNNGG	1 cut(s)	44
BseDI	CCNNGG	2 cut(s)	43, 301
BseLI	CCNNNNNNNGG	1 cut(s)	44
BseMII	CTCAG	1 cut(s)	182
BseSI	GKGCMC	1 cut(s)	220
BseXI	GCAGC	1 cut(s)	25
Bsh1236I	CGCG	2 cut(s)	45, 291
BshFI	GGCC	1 cut(s)	265
BshNI	GGYRCC	1 cut(s)	305
BsiHKAI	GWGCWC	1 cut(s)	31
BsiSI	CCGG	1 cut(s)	231
BslI	CCNNNNNNNGG	1 cut(s)	44
BsmAI	GTCTC	1 cut(s)	317
BsnI	GGCC	1 cut(s)	265
Bsp1286I	GDGCHC	2 cut(s)	31, 220
Bsp143I	GATC	1 cut(s)	4
BspACI	CCGC	6 cut(s)	43, 45, 48, 51, 135, 291
BspANI	GGCC	1 cut(s)	265
BspCNI	CTCAG	1 cut(s)	183
BspFNI	CGCG	2 cut(s)	45, 291
BspHI	TCATGA	1 cut(s)	153
BspLI	GGNNCC	1 cut(s)	307
BspPI	GGATC	1 cut(s)	12
BspT107I	GGYRCC	1 cut(s)	305
BssECI	CCNNGG	2 cut(s)	43, 301
BssMI	GATC	1 cut(s)	4
BssT1I	CCWWGG	1 cut(s)	301
Bst4CI	ACNGT	2 cut(s)	281, 316
BstC8I	GCNNGC	1 cut(s)	251
BstDEI	CTNAG	1 cut(s)	191
BstDSI	CCRYGG	1 cut(s)	43
BstFNI	CGCG	2 cut(s)	45, 291
BstKTI	GATC	1 cut(s)	7
BstMAI	GTCTC	1 cut(s)	317
BstMBI	GATC	1 cut(s)	4
BstMWI	GCNNNNNNNGC	1 cut(s)	224
BstNSI	RCATGY	2 cut(s)	253, 330
BstSCI	CCNGG	1 cut(s)	229
BstSFI	CTRYAG	1 cut(s)	8
BstSLI	GKGCMC	1 cut(s)	220
BstUI	CGCG	2 cut(s)	45, 291
BstV1I	GCAGC	1 cut(s)	25
BstX2I	RGATCY	1 cut(s)	4
BstYI	RGATCY	1 cut(s)	4
BsuRI	GGCC	1 cut(s)	265
BtgI	CCRYGG	1 cut(s)	43
BtsIMutI	CAGTG	1 cut(s)	286
Cac8I	GCNNGC	1 cut(s)	251
CciI	TCATGA	1 cut(s)	153
Cfr42I	CCGCGG	1 cut(s)	46
CseI	GACGC	1 cut(s)	297
Csp6I	GTAC	2 cut(s)	138, 306
CviAII	CATG	4 cut(s)	132, 154, 250, 327
CviJI	RGCY	4 cut(s)	29, 37, 190, 265
CviKI_1	RGCY	4 cut(s)	29, 37, 190, 265
CviQI	GTAC	2 cut(s)	138, 306
DdeI	CTNAG	1 cut(s)	191
DpnI	GATC	1 cut(s)	6
DpnII	GATC	1 cut(s)	4
Ecl136II	GAGCTC	1 cut(s)	29
Eco130I	CCWWGG	1 cut(s)	301
Eco147I	AGGCCT	1 cut(s)	265
Eco24I	GRGCYC	1 cut(s)	31
Eco53kI	GAGCTC	1 cut(s)	29
Eco57I	CTGAAG	1 cut(s)	89
EcoICRI	GAGCTC	1 cut(s)	29
EcoT14I	CCWWGG	1 cut(s)	301
EcoT38I	GRGCYC	1 cut(s)	31
ErhI	CCWWGG	1 cut(s)	301
FaeI	CATG	4 cut(s)	135, 157, 253, 330
FaiI	YATR	7 cut(s)	74, 79, 133, 155, 251, 319, 328
FalI	AAGNNNNNCTT	2 cut(s)	87, 119
FatI	CATG	4 cut(s)	131, 153, 249, 326
FauI	CCCGC	1 cut(s)	44
Fnu4HI	GCNGC	3 cut(s)	14, 46, 49
FriOI	GRGCYC	1 cut(s)	31
Fsp4HI	GCNGC	3 cut(s)	14, 46, 49
GluI	GCNGC	3 cut(s)	14, 46, 49
HaeIII	GGCC	1 cut(s)	265
HapII	CCGG	1 cut(s)	231
HgaI	GACGC	1 cut(s)	297
Hin1II	CATG	4 cut(s)	135, 157, 253, 330
HinfI	GANTC	1 cut(s)	109
HpaII	CCGG	1 cut(s)	231
Hpy188I	TCNGA	1 cut(s)	108
Hpy188III	TCNNGA	2 cut(s)	154, 206
HpyAV	CCTTC	1 cut(s)	113
HpyCH4III	ACNGT	2 cut(s)	281, 316
HpyF10VI	GCNNNNNNNGC	1 cut(s)	224
HpyF3I	CTNAG	1 cut(s)	191
Hsp92II	CATG	4 cut(s)	135, 157, 253, 330
KpnI	GGTACC	1 cut(s)	309
KspI	CCGCGG	1 cut(s)	46
Kzo9I	GATC	1 cut(s)	4
LmnI	GCTCC	2 cut(s)	34, 232
LpnPI	CCDG	2 cut(s)	244, 288
Lsp1109I	GCAGC	1 cut(s)	25
MaeIII	GTNAC	2 cut(s)	97, 256
MalI	GATC	1 cut(s)	6
MboI	GATC	1 cut(s)	4
MboII	GAAGA	1 cut(s)	181
MflI	RGATCY	1 cut(s)	4
MhlI	GDGCHC	2 cut(s)	31, 220
MlyI	GAGTC	1 cut(s)	103
MnlI	CCTC	1 cut(s)	48
MroXI	GAANNNNTTC	1 cut(s)	201
MseI	TTAA	1 cut(s)	159
MslI	CAYNNNNRTG	1 cut(s)	248
MspA1I	CMGCKG	1 cut(s)	45
MspI	CCGG	1 cut(s)	231
MspR9I	CCNGG	1 cut(s)	231
MvnI	CGCG	2 cut(s)	45, 291
MwoI	GCNNNNNNNGC	1 cut(s)	224
NciI	CCSGG	1 cut(s)	231
NdeII	GATC	1 cut(s)	4
NlaIII	CATG	4 cut(s)	135, 157, 253, 330
NlaIV	GGNNCC	1 cut(s)	307
NmuCI	GTSAC	2 cut(s)	97, 256
NspI	RCATGY	2 cut(s)	253, 330
PaeI	GCATGC	1 cut(s)	253
PagI	TCATGA	1 cut(s)	153
PceI	AGGCCT	1 cut(s)	265
PciI	ACATGT	1 cut(s)	326
PdmI	GAANNNNTTC	1 cut(s)	201
PkrI	GCNGC	3 cut(s)	15, 47, 50
PleI	GAGTC	1 cut(s)	103
PpsI	GAGTC	1 cut(s)	103
PscI	ACATGT	1 cut(s)	326
Psp124BI	GAGCTC	1 cut(s)	31
PspN4I	GGNNCC	1 cut(s)	307
PsuI	RGATCY	1 cut(s)	4
RsaI	GTAC	2 cut(s)	139, 307
RsaNI	GTAC	2 cut(s)	138, 306
RseI	CAYNNNNRTG	1 cut(s)	248
SacI	GAGCTC	1 cut(s)	31
SacII	CCGCGG	1 cut(s)	46
SaqAI	TTAA	1 cut(s)	159
SatI	GCNGC	3 cut(s)	14, 46, 49
Sau3AI	GATC	1 cut(s)	4
SchI	GAGTC	1 cut(s)	103
ScrFI	CCNGG	1 cut(s)	231
SduI	GDGCHC	2 cut(s)	31, 220
SetI	ASST	4 cut(s)	31, 91, 192, 307
SfcI	CTRYAG	1 cut(s)	8
Sfr303I	CCGCGG	1 cut(s)	46
SgrBI	CCGCGG	1 cut(s)	46
SmiMI	CAYNNNNRTG	1 cut(s)	248
SmlI	CTYRAG	2 cut(s)	62, 93
SmoI	CTYRAG	2 cut(s)	62, 93
SphI	GCATGC	1 cut(s)	253
SseBI	AGGCCT	1 cut(s)	265
SsiI	CCGC	6 cut(s)	43, 45, 48, 51, 135, 291
SstI	GAGCTC	1 cut(s)	31
StuI	AGGCCT	1 cut(s)	265
StyD4I	CCNGG	1 cut(s)	229
StyI	CCWWGG	1 cut(s)	301
TaaI	ACNGT	2 cut(s)	281, 316
TauI	GCSGC	2 cut(s)	48, 51
Tru1I	TTAA	1 cut(s)	159
Tru9I	TTAA	1 cut(s)	159
TscAI	CASTG	1 cut(s)	286
TseFI	GTSAC	2 cut(s)	97, 256
TseI	GCWGC	1 cut(s)	13
Tsp45I	GTSAC	2 cut(s)	97, 256
TspDTI	ATGAA	2 cut(s)	47, 198
TspRI	CASTG	1 cut(s)	286
XceI	RCATGY	2 cut(s)	253, 330
XmnI	GAANNNNTTC	1 cut(s)	201

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.