Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0017812

Physical Location & Seq

Genomic Coordinates Reverse (-)

64347351 .. 64348491

Gene Structure 1141 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ41070

Sequence Viewer

CDS Protein Promoter (2k)

Length: 222 bp

ATGATCAGTTCTTATGTTGAGAAGCCTAACTGCATTATATTGGCTATATCTCCTGCTAATCAAGATATTGCCACTTCAGATGCCATTGAACTTGCAAGAGAGGTCGATCCATCAGGCAGAACATTTGGAGTGATAACAAAACTTGATCTAATGGACAAGGGAACCAACGCTTTCAATAAGGAAGGCCATACAGACTGCACCACCCATGATGGCTGCTTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000266 GO:0003674 GO:0003824 GO:0003924 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0005911 GO:0005938 GO:0006996 GO:0007005 GO:0007275 GO:0008017 GO:0008092 GO:0008150 GO:0009504 GO:0009506 GO:0009555 GO:0009987 GO:0010152 GO:0015631 GO:0016020 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0017111 GO:0021700 GO:0030054 GO:0032501 GO:0032502 GO:0044424 GO:0044444 GO:0044464 GO:0048229 GO:0048285 GO:0048856 GO:0055044 GO:0071840 GO:0071944 GO:0099568

KEGG Pathways

Metabolic & Signaling

ko04072 ko04144 ko04721 ko04961 ko05100 map04072 map04144 map04721 map04961 map05100

Pfam Domains

Protein Families

Dynamin_M Dynamin_N GED

Protein Analysis

73

Amino Acids

7.85

Weight (kDa)

4.64

Isoelectric Point (pI)

34.87

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Dynamin_N	PF00350	1 - 48	8.4e-10	Dynamin family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017812)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr4g0442971
rosa_multiflora	Rmu_sc0013601.1_g000001
rosa_roxburghii	Rroxscaffold_1G00015090 Rroxscaffold_2G00111100 Rroxscaffold_2G00138840 Rroxscaffold_3G00223880 Rroxscaffold_6G00405200
rosa_rugosa	Rorug01G0219200 Rorug05G0153000
rosa_samantha	Rh1CG170000 Rh4CG035300 Rh6AG185300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	101
AcuI	CTGAAG	1 cut(s)	60
AgsI	TTSAA	2 cut(s)	89, 175
AlwI	GGATC	1 cut(s)	101
AoxI	GGCC	1 cut(s)	184
ApeKI	GCWGC	1 cut(s)	213
BbvI	GCAGC	1 cut(s)	200
BccI	CCATC	2 cut(s)	118, 203
BclI	TGATCA	1 cut(s)	3
BisI	GCNGC	1 cut(s)	214
BlsI	GCNGC	1 cut(s)	215
BmiI	GGNNCC	1 cut(s)	163
BmsI	GCATC	1 cut(s)	70
BseXI	GCAGC	1 cut(s)	200
BsgI	GTGCAG	1 cut(s)	181
BshFI	GGCC	1 cut(s)	186
BsnI	GGCC	1 cut(s)	186
Bsp143I	GATC	3 cut(s)	3, 106, 145
BspANI	GGCC	1 cut(s)	186
BspLI	GGNNCC	1 cut(s)	163
BspPI	GGATC	1 cut(s)	101
BssMI	GATC	3 cut(s)	3, 106, 145
BstKTI	GATC	3 cut(s)	6, 109, 148
BstMBI	GATC	3 cut(s)	3, 106, 145
BstV1I	GCAGC	1 cut(s)	200
BsuRI	GGCC	1 cut(s)	186
CviAII	CATG	1 cut(s)	206
CviJI	RGCY	4 cut(s)	25, 44, 186, 213
CviKI_1	RGCY	4 cut(s)	25, 44, 186, 213
DpnI	GATC	3 cut(s)	5, 108, 147
DpnII	GATC	3 cut(s)	3, 106, 145
Eco57I	CTGAAG	1 cut(s)	60
FaeI	CATG	1 cut(s)	209
FaiI	YATR	6 cut(s)	15, 38, 47, 189, 207, 220
FatI	CATG	1 cut(s)	205
FbaI	TGATCA	1 cut(s)	3
Fnu4HI	GCNGC	1 cut(s)	214
Fsp4HI	GCNGC	1 cut(s)	214
GluI	GCNGC	1 cut(s)	214
HaeIII	GGCC	1 cut(s)	186
Hin1II	CATG	1 cut(s)	209
Hpy188I	TCNGA	1 cut(s)	79
Hpy188III	TCNNGA	1 cut(s)	62
HpyAV	CCTTC	1 cut(s)	176
HpyCH4V	TGCA	3 cut(s)	33, 95, 198
Hsp92II	CATG	1 cut(s)	209
Ksp22I	TGATCA	1 cut(s)	3
Kzo9I	GATC	3 cut(s)	3, 106, 145
LpnPI	CCDG	2 cut(s)	66, 99
Lsp1109I	GCAGC	1 cut(s)	200
LweI	GCATC	1 cut(s)	70
MalI	GATC	3 cut(s)	5, 108, 147
MboI	GATC	3 cut(s)	3, 106, 145
MnlI	CCTC	1 cut(s)	94
NdeII	GATC	3 cut(s)	3, 106, 145
NlaIII	CATG	1 cut(s)	209
NlaIV	GGNNCC	1 cut(s)	163
PkrI	GCNGC	1 cut(s)	215
PspN4I	GGNNCC	1 cut(s)	163
SatI	GCNGC	1 cut(s)	214
Sau3AI	GATC	3 cut(s)	3, 106, 145
SetI	ASST	1 cut(s)	105
SfaNI	GCATC	1 cut(s)	70
SgeI	CNNG	8 cut(s)	65, 74, 104, 108, 126, 155, 169, 218
TaqI	TCGA	1 cut(s)	105
TseI	GCWGC	1 cut(s)	213

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.