Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4C

Orthogroup ID

OG0017812

Physical Location & Seq

Genomic Coordinates Reverse (-)

7243592 .. 7244372

Gene Structure 781 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4CG035300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 222 bp

ATGATCAGTTCTTATGTTGAGAAGCCTAACTGCATTATATTGGCTATATCTCCTGCTAATCAAGATATTGCCACTTCAGATGCCATTGAACTTGCAAGAGAAGTCGATCCATCAGGTAGAACATTTGGAGTGATAACAAAACTTGATCTAATGGACAAGGGAGCCATCGCTTTCAATAAGGAAGGTCATATAGACTGCAACACCCATGATGGCTGCTTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000266 GO:0003674 GO:0003824 GO:0003924 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0005911 GO:0005938 GO:0006996 GO:0007005 GO:0007275 GO:0008017 GO:0008092 GO:0008150 GO:0009504 GO:0009506 GO:0009555 GO:0009987 GO:0010152 GO:0015631 GO:0016020 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0017111 GO:0021700 GO:0030054 GO:0032501 GO:0032502 GO:0044424 GO:0044444 GO:0044464 GO:0048229 GO:0048285 GO:0048856 GO:0055044 GO:0071840 GO:0071944 GO:0099568

KEGG Pathways

Metabolic & Signaling

ko04072 ko04144 ko04721 ko04961 ko05100 map04072 map04144 map04721 map04961 map05100

Pfam Domains

Protein Families

Dynamin_M Dynamin_N GED

Protein Analysis

73

Amino Acids

7.85

Weight (kDa)

4.64

Isoelectric Point (pI)

38.35

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Dynamin_N	PF00350	1 - 48	8.4e-10	Dynamin family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0017812)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr4g0442971
rosa_multiflora	Rmu_sc0013601.1_g000001
rosa_roxburghii	Rroxscaffold_1G00015090 Rroxscaffold_2G00111100 Rroxscaffold_2G00138840 Rroxscaffold_3G00223880 Rroxscaffold_6G00405200
rosa_rugosa	Rorug01G0219200 Rorug05G0153000
rosa_samantha	Rh1CG170000 Rh4CG035300 Rh6AG185300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	101
AcuI	CTGAAG	1 cut(s)	60
AgsI	TTSAA	2 cut(s)	89, 175
AlwI	GGATC	1 cut(s)	101
ApeKI	GCWGC	1 cut(s)	213
BbvI	GCAGC	1 cut(s)	200
BccI	CCATC	3 cut(s)	118, 173, 203
BclI	TGATCA	1 cut(s)	3
BisI	GCNGC	1 cut(s)	214
BlsI	GCNGC	1 cut(s)	215
BmiI	GGNNCC	1 cut(s)	163
BmsI	GCATC	1 cut(s)	70
BseXI	GCAGC	1 cut(s)	200
Bsp143I	GATC	3 cut(s)	3, 106, 145
BspLI	GGNNCC	1 cut(s)	163
BspPI	GGATC	1 cut(s)	101
BssMI	GATC	3 cut(s)	3, 106, 145
BstKTI	GATC	3 cut(s)	6, 109, 148
BstMBI	GATC	3 cut(s)	3, 106, 145
BstV1I	GCAGC	1 cut(s)	200
BtgZI	GCGATG	1 cut(s)	151
CviAII	CATG	1 cut(s)	206
CviJI	RGCY	4 cut(s)	25, 44, 164, 213
CviKI_1	RGCY	4 cut(s)	25, 44, 164, 213
DpnI	GATC	3 cut(s)	5, 108, 147
DpnII	GATC	3 cut(s)	3, 106, 145
Eco57I	CTGAAG	1 cut(s)	60
FaeI	CATG	1 cut(s)	209
FaiI	YATR	7 cut(s)	15, 38, 47, 189, 191, 207, 220
FatI	CATG	1 cut(s)	205
FbaI	TGATCA	1 cut(s)	3
Fnu4HI	GCNGC	1 cut(s)	214
Fsp4HI	GCNGC	1 cut(s)	214
GluI	GCNGC	1 cut(s)	214
Hin1II	CATG	1 cut(s)	209
Hpy188I	TCNGA	1 cut(s)	79
Hpy188III	TCNNGA	1 cut(s)	62
HpyAV	CCTTC	1 cut(s)	176
HpyCH4V	TGCA	3 cut(s)	33, 95, 198
Hsp92II	CATG	1 cut(s)	209
Ksp22I	TGATCA	1 cut(s)	3
Kzo9I	GATC	3 cut(s)	3, 106, 145
LmnI	GCTCC	1 cut(s)	161
LpnPI	CCDG	2 cut(s)	66, 99
Lsp1109I	GCAGC	1 cut(s)	200
LweI	GCATC	1 cut(s)	70
MalI	GATC	3 cut(s)	5, 108, 147
MboI	GATC	3 cut(s)	3, 106, 145
NdeII	GATC	3 cut(s)	3, 106, 145
NlaIII	CATG	1 cut(s)	209
NlaIV	GGNNCC	1 cut(s)	163
PkrI	GCNGC	1 cut(s)	215
PspN4I	GGNNCC	1 cut(s)	163
SatI	GCNGC	1 cut(s)	214
Sau3AI	GATC	3 cut(s)	3, 106, 145
SetI	ASST	2 cut(s)	118, 187
SfaNI	GCATC	1 cut(s)	70
SgeI	CNNG	8 cut(s)	65, 74, 104, 108, 126, 155, 169, 218
TaqI	TCGA	1 cut(s)	105
TseI	GCWGC	1 cut(s)	213

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.