conserved protein UCP009193
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| Species | Orthologous Gene IDs |
|---|---|
| rosa_chinensis | RchiOBHm_Chr4g0442971 |
| rosa_multiflora | Rmu_sc0013601.1_g000001 |
| rosa_roxburghii | Rroxscaffold_1G00015090 Rroxscaffold_2G00111100 Rroxscaffold_2G00138840 Rroxscaffold_3G00223880 Rroxscaffold_6G00405200 |
| rosa_rugosa | Rorug01G0219200 Rorug05G0153000 |
| rosa_samantha | Rh1CG170000 Rh4CG035300 Rh6AG185300 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 408 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 448 |
| AccBSI | CCGCTC | 1 cut(s) | 1232 |
| AccI | GTMKAC | 1 cut(s) | 1279 |
| AccII | CGCG | 6 cut(s) | 454, 542, 1003, 1123, 1173, 1209 |
| AccIII | TCCGGA | 1 cut(s) | 1339 |
| AclI | AACGTT | 1 cut(s) | 508 |
| AcsI | RAATTY | 3 cut(s) | 708, 1260, 1362 |
| AcyI | GRCGYC | 2 cut(s) | 110, 409 |
| AfaI | GTAC | 2 cut(s) | 56, 1106 |
| AgsI | TTSAA | 6 cut(s) | 277, 526, 732, 769, 808, 1404 |
| AhlI | ACTAGT | 2 cut(s) | 742, 1349 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 287, 319 |
| AluBI | AGCT | 7 cut(s) | 319, 432, 763, 853, 995, 1064, 1091 |
| AluI | AGCT | 7 cut(s) | 319, 432, 763, 853, 995, 1064, 1091 |
| Alw26I | GTCTC | 3 cut(s) | 805, 935, 1216 |
| Aor13HI | TCCGGA | 1 cut(s) | 1339 |
| AoxI | GGCC | 4 cut(s) | 27, 32, 46, 1132 |
| ApeKI | GCWGC | 4 cut(s) | 956, 992, 1061, 1088 |
| ApoI | RAATTY | 3 cut(s) | 708, 1260, 1362 |
| AspLEI | GCGC | 3 cut(s) | 411, 454, 544 |
| AspS9I | GGNCC | 3 cut(s) | 28, 47, 845 |
| AsuC2I | CCSGG | 3 cut(s) | 31, 413, 660 |
| AsuHPI | GGTGA | 1 cut(s) | 964 |
| AvaII | GGWCC | 1 cut(s) | 845 |
| BamHI | GGATCC | 2 cut(s) | 195, 1272 |
| BanI | GGYRCC | 1 cut(s) | 408 |
| BbsI | GAAGAC | 1 cut(s) | 1171 |
| BbvI | GCAGC | 4 cut(s) | 968, 1004, 1073, 1100 |
| BccI | CCATC | 6 cut(s) | 136, 159, 397, 442, 983, 995 |
| BceAI | ACGGC | 2 cut(s) | 706, 1178 |
| BcgI | CGANNNNNNTGC | 4 cut(s) | 945, 979, 1040, 1074 |
| BcnI | CCSGG | 3 cut(s) | 31, 413, 660 |
| BcoDI | GTCTC | 3 cut(s) | 805, 935, 1216 |
| BcuI | ACTAGT | 2 cut(s) | 742, 1349 |
| BfaI | CTAG | 6 cut(s) | 74, 489, 624, 743, 1299, 1350 |
| BfmI | CTRYAG | 1 cut(s) | 1059 |
| BfoI | RGCGCY | 1 cut(s) | 412 |
| BglI | GCCNNNNNGGC | 2 cut(s) | 1123, 1162 |
| BisI | GCNGC | 7 cut(s) | 455, 545, 957, 993, 1062, 1089, 1124 |
| BlsI | GCNGC | 7 cut(s) | 456, 546, 958, 994, 1063, 1090, 1125 |
| Bme1390I | CCNGG | 3 cut(s) | 31, 413, 660 |
| Bme18I | GGWCC | 1 cut(s) | 845 |
| BmgT120I | GGNCC | 3 cut(s) | 28, 47, 845 |
| BmiI | GGNNCC | 7 cut(s) | 197, 410, 629, 847, 1166, 1274, 1338 |
| BmrFI | CCNGG | 3 cut(s) | 31, 413, 660 |
| BmsI | GCATC | 2 cut(s) | 594, 1333 |
| BpiI | GAAGAC | 1 cut(s) | 1171 |
| BpuEI | CTTGAG | 1 cut(s) | 1136 |
| BpuMI | CCSGG | 3 cut(s) | 31, 413, 660 |
| Bsa29I | ATCGAT | 4 cut(s) | 483, 755, 909, 1013 |
| BsaAI | YACGTR | 1 cut(s) | 85 |
| BsaBI | GATNNNNATC | 1 cut(s) | 260 |
| BsaHI | GRCGYC | 2 cut(s) | 110, 409 |
| BsaI | GGTCTC | 1 cut(s) | 935 |
| BsaJI | CCNNGG | 7 cut(s) | 62, 393, 404, 1121, 1160, 1171, 1218 |
| BsaWI | WCCGGW | 3 cut(s) | 41, 192, 1339 |
| Bse118I | RCCGGY | 1 cut(s) | 112 |
| Bse3DI | GCAATG | 1 cut(s) | 1425 |
| Bse8I | GATNNNNATC | 1 cut(s) | 260 |
| BseAI | TCCGGA | 1 cut(s) | 1339 |
| BseCI | ATCGAT | 4 cut(s) | 483, 755, 909, 1013 |
| BseDI | CCNNGG | 7 cut(s) | 62, 393, 404, 1121, 1160, 1171, 1218 |
| BseGI | GGATG | 3 cut(s) | 151, 389, 1348 |
| BseJI | GATNNNNATC | 1 cut(s) | 260 |
| BseMI | GCAATG | 1 cut(s) | 1425 |
| BseMII | CTCAG | 1 cut(s) | 266 |
| BseRI | GAGGAG | 2 cut(s) | 594, 1216 |
| BseXI | GCAGC | 4 cut(s) | 968, 1004, 1073, 1100 |
| Bsh1236I | CGCG | 6 cut(s) | 454, 542, 1003, 1123, 1173, 1209 |
| Bsh1285I | CGRYCG | 2 cut(s) | 954, 1142 |
| BshFI | GGCC | 4 cut(s) | 29, 34, 48, 1134 |
| BshNI | GGYRCC | 1 cut(s) | 408 |
| BshVI | ATCGAT | 4 cut(s) | 483, 755, 909, 1013 |
| BsiEI | CGRYCG | 2 cut(s) | 954, 1142 |
| BsiSI | CCGG | 7 cut(s) | 31, 42, 113, 193, 412, 660, 1340 |
| BsmAI | GTCTC | 3 cut(s) | 805, 935, 1216 |
| BsmBI | CGTCTC | 1 cut(s) | 1216 |
| BsnI | GGCC | 4 cut(s) | 29, 34, 48, 1134 |
| Bso31I | GGTCTC | 1 cut(s) | 935 |
| Bsp13I | TCCGGA | 1 cut(s) | 1339 |
| BspANI | GGCC | 4 cut(s) | 29, 34, 48, 1134 |
| BspCNI | CTCAG | 1 cut(s) | 265 |
| BspDI | ATCGAT | 4 cut(s) | 483, 755, 909, 1013 |
| BspEI | TCCGGA | 1 cut(s) | 1339 |
| BspFNI | CGCG | 6 cut(s) | 454, 542, 1003, 1123, 1173, 1209 |
| BspLI | GGNNCC | 7 cut(s) | 197, 410, 629, 847, 1166, 1274, 1338 |
| BspMAI | CTGCAG | 1 cut(s) | 1063 |
| BspQI | GCTCTTC | 5 cut(s) | 974, 1071, 1098, 1105, 1133 |
| BspT107I | GGYRCC | 1 cut(s) | 408 |
| BspTNI | GGTCTC | 1 cut(s) | 935 |
| BsrBI | CCGCTC | 1 cut(s) | 1232 |
| BsrDI | GCAATG | 1 cut(s) | 1425 |
| BsrFI | RCCGGY | 1 cut(s) | 112 |
| BssAI | RCCGGY | 1 cut(s) | 112 |
| BssECI | CCNNGG | 7 cut(s) | 62, 393, 404, 1121, 1160, 1171, 1218 |
| BssNI | GRCGYC | 2 cut(s) | 110, 409 |
| BssT1I | CCWWGG | 1 cut(s) | 62 |
| Bst4CI | ACNGT | 2 cut(s) | 405, 551 |
| Bst6I | CTCTTC | 7 cut(s) | 527, 967, 974, 1071, 1098, 1105, 1133 |
| BstACI | GRCGYC | 2 cut(s) | 110, 409 |
| BstBAI | YACGTR | 1 cut(s) | 85 |
| BstC8I | GCNNGC | 1 cut(s) | 114 |
| BstDEI | CTNAG | 2 cut(s) | 252, 458 |
| BstDSI | CCRYGG | 4 cut(s) | 404, 1121, 1160, 1171 |
| BstF5I | GGATG | 3 cut(s) | 151, 389, 1348 |
| BstFNI | CGCG | 6 cut(s) | 454, 542, 1003, 1123, 1173, 1209 |
| BstH2I | RGCGCY | 1 cut(s) | 412 |
| BstHHI | GCGC | 3 cut(s) | 411, 454, 544 |
| BstMAI | GTCTC | 3 cut(s) | 805, 935, 1216 |
| BstMCI | CGRYCG | 2 cut(s) | 954, 1142 |
| BstMWI | GCNNNNNNNGC | 9 cut(s) | 118, 417, 956, 992, 1052, 1061, 1088, 1123, 1162 |
| BstNSI | RCATGY | 1 cut(s) | 370 |
| BstSCI | CCNGG | 3 cut(s) | 29, 411, 658 |
| BstSFI | CTRYAG | 1 cut(s) | 1059 |
| BstUI | CGCG | 6 cut(s) | 454, 542, 1003, 1123, 1173, 1209 |
| BstV1I | GCAGC | 4 cut(s) | 968, 1004, 1073, 1100 |
| BstV2I | GAAGAC | 1 cut(s) | 1171 |
| BstX2I | RGATCY | 3 cut(s) | 195, 1272, 1295 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 237 |
| BstYI | RGATCY | 3 cut(s) | 195, 1272, 1295 |
| Bsu15I | ATCGAT | 4 cut(s) | 483, 755, 909, 1013 |
| BsuRI | GGCC | 4 cut(s) | 29, 34, 48, 1134 |
| BsuTUI | ATCGAT | 4 cut(s) | 483, 755, 909, 1013 |
| BtgI | CCRYGG | 4 cut(s) | 404, 1121, 1160, 1171 |
| BtgZI | GCGATG | 3 cut(s) | 128, 961, 973 |
| BtsCI | GGATG | 3 cut(s) | 151, 389, 1348 |
| BtsI | GCAGTG | 2 cut(s) | 1056, 1414 |
| BtsIMutI | CAGTG | 2 cut(s) | 1056, 1414 |
| Cac8I | GCNNGC | 1 cut(s) | 114 |
| CfoI | GCGC | 3 cut(s) | 411, 454, 544 |
| Cfr10I | RCCGGY | 1 cut(s) | 112 |
| Cfr13I | GGNCC | 3 cut(s) | 28, 47, 845 |
| Cfr42I | CCGCGG | 2 cut(s) | 1124, 1174 |
| ClaI | ATCGAT | 4 cut(s) | 483, 755, 909, 1013 |
| CseI | GACGC | 2 cut(s) | 118, 1198 |
| Csp6I | GTAC | 2 cut(s) | 55, 1105 |
| CviAII | CATG | 4 cut(s) | 247, 367, 497, 1358 |
| CviQI | GTAC | 2 cut(s) | 55, 1105 |
| DdeI | CTNAG | 2 cut(s) | 252, 458 |
| DinI | GGCGCC | 1 cut(s) | 410 |
| Eam1104I | CTCTTC | 7 cut(s) | 527, 967, 974, 1071, 1098, 1105, 1133 |
| EarI | CTCTTC | 7 cut(s) | 527, 967, 974, 1071, 1098, 1105, 1133 |
| EciI | GGCGGA | 2 cut(s) | 147, 1204 |
| Eco130I | CCWWGG | 1 cut(s) | 62 |
| Eco31I | GGTCTC | 1 cut(s) | 935 |
| Eco32I | GATATC | 1 cut(s) | 781 |
| Eco47I | GGWCC | 1 cut(s) | 845 |
| EcoRI | GAATTC | 1 cut(s) | 708 |
| EcoRV | GATATC | 1 cut(s) | 781 |
| EcoT14I | CCWWGG | 1 cut(s) | 62 |
| EgeI | GGCGCC | 1 cut(s) | 410 |
| EheI | GGCGCC | 1 cut(s) | 410 |
| ErhI | CCWWGG | 1 cut(s) | 62 |
| Esp3I | CGTCTC | 1 cut(s) | 1216 |
| FaeI | CATG | 4 cut(s) | 250, 370, 500, 1361 |
| FaiI | YATR | 8 cut(s) | 248, 290, 368, 374, 498, 675, 1319, 1359 |
| FatI | CATG | 4 cut(s) | 246, 366, 496, 1357 |
| FauI | CCCGC | 3 cut(s) | 215, 628, 1166 |
| FblI | GTMKAC | 1 cut(s) | 1279 |
| Fnu4HI | GCNGC | 7 cut(s) | 455, 545, 957, 993, 1062, 1089, 1124 |
| FokI | GGATG | 3 cut(s) | 138, 376, 1355 |
| Fsp4HI | GCNGC | 7 cut(s) | 455, 545, 957, 993, 1062, 1089, 1124 |
| FspBI | CTAG | 6 cut(s) | 74, 489, 624, 743, 1299, 1350 |
| GlaI | GCGC | 3 cut(s) | 410, 453, 543 |
| GluI | GCNGC | 7 cut(s) | 455, 545, 957, 993, 1062, 1089, 1124 |
| HaeII | RGCGCY | 1 cut(s) | 412 |
| HaeIII | GGCC | 4 cut(s) | 29, 34, 48, 1134 |
| HapII | CCGG | 7 cut(s) | 31, 42, 113, 193, 412, 660, 1340 |
| HgaI | GACGC | 2 cut(s) | 118, 1198 |
| HhaI | GCGC | 3 cut(s) | 411, 454, 544 |
| Hin1I | GRCGYC | 2 cut(s) | 110, 409 |
| Hin1II | CATG | 4 cut(s) | 250, 370, 500, 1361 |
| Hin6I | GCGC | 3 cut(s) | 409, 452, 542 |
| HinP1I | GCGC | 3 cut(s) | 409, 452, 542 |
| HincII | GTYRAC | 1 cut(s) | 691 |
| HindII | GTYRAC | 1 cut(s) | 691 |
| HindIII | AAGCTT | 1 cut(s) | 317 |
| HinfI | GANTC | 9 cut(s) | 250, 485, 757, 911, 1015, 1223, 1373, 1393, 1400 |
| HpaII | CCGG | 7 cut(s) | 31, 42, 113, 193, 412, 660, 1340 |
| HphI | GGTGA | 1 cut(s) | 964 |
| Hpy166II | GTNNAC | 3 cut(s) | 691, 791, 1280 |
| Hpy188I | TCNGA | 5 cut(s) | 255, 394, 471, 1222, 1368 |
| Hpy188III | TCNNGA | 5 cut(s) | 106, 132, 1299, 1340, 1397 |
| Hpy8I | GTNNAC | 3 cut(s) | 691, 791, 1280 |
| Hpy99I | CGWCG | 3 cut(s) | 101, 170, 179 |
| HpyAV | CCTTC | 8 cut(s) | 19, 547, 779, 1145, 1155, 1283, 1340, 1382 |
| HpyCH4III | ACNGT | 2 cut(s) | 405, 551 |
| HpyCH4IV | ACGT | 2 cut(s) | 84, 508 |
| HpyCH4V | TGCA | 3 cut(s) | 1061, 1307, 1346 |
| HpyF10VI | GCNNNNNNNGC | 9 cut(s) | 118, 417, 956, 992, 1052, 1061, 1088, 1123, 1162 |
| HpyF3I | CTNAG | 2 cut(s) | 252, 458 |
| HpySE526I | ACGT | 2 cut(s) | 84, 508 |
| Hsp92I | GRCGYC | 2 cut(s) | 110, 409 |
| Hsp92II | CATG | 4 cut(s) | 250, 370, 500, 1361 |
| HspAI | GCGC | 3 cut(s) | 409, 452, 542 |
| KasI | GGCGCC | 1 cut(s) | 408 |
| Kpn2I | TCCGGA | 1 cut(s) | 1339 |
| KroI | GCCGGC | 1 cut(s) | 112 |
| KroNI | GCCGGC | 1 cut(s) | 114 |
| KspI | CCGCGG | 2 cut(s) | 1124, 1174 |
| LguI | GCTCTTC | 5 cut(s) | 974, 1071, 1098, 1105, 1133 |
| LmnI | GCTCC | 4 cut(s) | 858, 1000, 1170, 1237 |
| Lsp1109I | GCAGC | 4 cut(s) | 968, 1004, 1073, 1100 |
| LweI | GCATC | 2 cut(s) | 594, 1333 |
| MaeI | CTAG | 6 cut(s) | 74, 489, 624, 743, 1299, 1350 |
| MaeII | ACGT | 2 cut(s) | 84, 508 |
| MaeIII | GTNAC | 2 cut(s) | 85, 1352 |
| MbiI | CCGCTC | 1 cut(s) | 1232 |
| MflI | RGATCY | 3 cut(s) | 195, 1272, 1295 |
| MluCI | AATT | 8 cut(s) | 285, 526, 643, 708, 715, 813, 1260, 1362 |
| Mly113I | GGCGCC | 1 cut(s) | 409 |
| MlyI | GAGTC | 3 cut(s) | 244, 1217, 1382 |
| MmeI | TCCRAC | 1 cut(s) | 62 |
| MreI | CGCCGGCG | 1 cut(s) | 112 |
| MroI | TCCGGA | 1 cut(s) | 1339 |
| MroNI | GCCGGC | 1 cut(s) | 112 |
| MseI | TTAA | 2 cut(s) | 321, 332 |
| MspA1I | CMGCKG | 2 cut(s) | 1123, 1173 |
| MspI | CCGG | 7 cut(s) | 31, 42, 113, 193, 412, 660, 1340 |
| MspR9I | CCNGG | 3 cut(s) | 31, 413, 660 |
| MvnI | CGCG | 6 cut(s) | 454, 542, 1003, 1123, 1173, 1209 |
| MwoI | GCNNNNNNNGC | 9 cut(s) | 118, 417, 956, 992, 1052, 1061, 1088, 1123, 1162 |
| NaeI | GCCGGC | 1 cut(s) | 114 |
| NarI | GGCGCC | 1 cut(s) | 409 |
| NciI | CCSGG | 3 cut(s) | 31, 413, 660 |
| NgoMIV | GCCGGC | 1 cut(s) | 112 |
| NlaIII | CATG | 4 cut(s) | 250, 370, 500, 1361 |
| NlaIV | GGNNCC | 7 cut(s) | 197, 410, 629, 847, 1166, 1274, 1338 |
| NmuCI | GTSAC | 1 cut(s) | 1352 |
| NspI | RCATGY | 1 cut(s) | 370 |
| PciSI | GCTCTTC | 5 cut(s) | 974, 1071, 1098, 1105, 1133 |
| PcsI | WCGNNNNNNNCGW | 5 cut(s) | 130, 174, 915, 1019, 1273 |
| PdiI | GCCGGC | 1 cut(s) | 114 |
| PfeI | GAWTC | 6 cut(s) | 485, 757, 911, 1015, 1393, 1400 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 448 |
| PkrI | GCNGC | 7 cut(s) | 456, 546, 958, 994, 1063, 1090, 1125 |
| Ple19I | CGATCG | 1 cut(s) | 1142 |
| PleI | GAGTC | 3 cut(s) | 244, 1217, 1381 |
| PluTI | GGCGCC | 1 cut(s) | 412 |
| PpsI | GAGTC | 3 cut(s) | 244, 1217, 1381 |
| Ppu21I | YACGTR | 1 cut(s) | 85 |
| Psp1406I | AACGTT | 1 cut(s) | 508 |
| PspN4I | GGNNCC | 7 cut(s) | 197, 410, 629, 847, 1166, 1274, 1338 |
| PspPI | GGNCC | 3 cut(s) | 28, 47, 845 |
| PstI | CTGCAG | 1 cut(s) | 1063 |
| PsuI | RGATCY | 3 cut(s) | 195, 1272, 1295 |
| PvuI | CGATCG | 1 cut(s) | 1142 |
| RsaI | GTAC | 2 cut(s) | 56, 1106 |
| RsaNI | GTAC | 2 cut(s) | 55, 1105 |
| SacII | CCGCGG | 2 cut(s) | 1124, 1174 |
| SapI | GCTCTTC | 5 cut(s) | 974, 1071, 1098, 1105, 1133 |
| SaqAI | TTAA | 2 cut(s) | 321, 332 |
| SatI | GCNGC | 7 cut(s) | 455, 545, 957, 993, 1062, 1089, 1124 |
| Sau96I | GGNCC | 3 cut(s) | 28, 47, 845 |
| SchI | GAGTC | 3 cut(s) | 244, 1217, 1382 |
| ScrFI | CCNGG | 3 cut(s) | 31, 413, 660 |
| SfaNI | GCATC | 2 cut(s) | 594, 1333 |
| SfcI | CTRYAG | 1 cut(s) | 1059 |
| SfoI | GGCGCC | 1 cut(s) | 410 |
| Sfr303I | CCGCGG | 2 cut(s) | 1124, 1174 |
| SgrAI | CRCCGGYG | 1 cut(s) | 112 |
| SgrBI | CCGCGG | 2 cut(s) | 1124, 1174 |
| SinI | GGWCC | 1 cut(s) | 845 |
| SmlI | CTYRAG | 1 cut(s) | 1151 |
| SmoI | CTYRAG | 1 cut(s) | 1151 |
| SpeI | ACTAGT | 2 cut(s) | 742, 1349 |
| Sse9I | AATT | 8 cut(s) | 285, 526, 643, 708, 715, 813, 1260, 1362 |
| SspDI | GGCGCC | 1 cut(s) | 408 |
| SspI | AATATT | 1 cut(s) | 330 |
| SspMI | CTAG | 6 cut(s) | 74, 489, 624, 743, 1299, 1350 |
| StyD4I | CCNGG | 3 cut(s) | 29, 411, 658 |
| StyI | CCWWGG | 1 cut(s) | 62 |
| TaaI | ACNGT | 2 cut(s) | 405, 551 |
| TaiI | ACGT | 2 cut(s) | 87, 511 |
| TasI | AATT | 8 cut(s) | 285, 526, 643, 708, 715, 813, 1260, 1362 |
| TauI | GCSGC | 3 cut(s) | 457, 547, 1126 |
| TfiI | GAWTC | 6 cut(s) | 485, 757, 911, 1015, 1393, 1400 |
| Tru1I | TTAA | 2 cut(s) | 321, 332 |
| Tru9I | TTAA | 2 cut(s) | 321, 332 |
| TscAI | CASTG | 2 cut(s) | 1063, 1414 |
| TseFI | GTSAC | 1 cut(s) | 1352 |
| TseI | GCWGC | 4 cut(s) | 956, 992, 1061, 1088 |
| Tsp45I | GTSAC | 1 cut(s) | 1352 |
| TspDTI | ATGAA | 5 cut(s) | 249, 806, 903, 1007, 1374 |
| TspGWI | ACGGA | 6 cut(s) | 858, 919, 1224, 1265, 1268, 1366 |
| TspRI | CASTG | 2 cut(s) | 1063, 1414 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 448 |
| VpaK11BI | GGWCC | 1 cut(s) | 845 |
| XapI | RAATTY | 3 cut(s) | 708, 1260, 1362 |
| XbaI | TCTAGA | 1 cut(s) | 1298 |
| XceI | RCATGY | 1 cut(s) | 370 |
| XmiI | GTMKAC | 1 cut(s) | 1279 |
| XspI | CTAG | 6 cut(s) | 74, 489, 624, 743, 1299, 1350 |