Rroxscaffold_6G00405200

conserved protein UCP009193

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
Physical Location & Seq
Reverse (-)
27615328 .. 27626877
11550 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00405200.1

Sequence Viewer

Length: 1428 bp
ATGGAAGCCCAAGCCCACACAAGGAAGGCCCGGCCTCCAACCGGAGGCCCGAAGTACCAACCTTGGGAAACCCTAGCACCGCACGTAACCTCCACCGACGACATCAAGACGCCGGCGTTGCTACGACCATCACGACCACCACATCGCCACCATCCTCCGCCACCCGACGACAACGACGAAAACTACCAAAACCGGATCCAATCCACCCGCCAAAGGATCGTAGAAACACCAAATGAATGGCTGGACATGACTCAGATCGAAATCCCCCAAGACTTCAAAGCCGAAATTATATTGGAGATAGGGTTCTCTACATCAAAGCTTAAACAAATATTAACGAACTATTTGGTTCGAGCATTTTGTCATCACATGCTCATATTCACACCATTCCCATCCGAGGCAAGACCGTGGCGCCGGGTTCGCAAGGCAACGAGCTTCCAAGCCCAAGTGATGGCGCGGCTTAGAAGTGATCGGATATTGGAGATCGATTCTAGCCACCATGATCGACAACGTTGGCTAAAACTCTTCAATTCTCCCTCCTTCGCGCCGCACCGTCCAAACTACTACCGAGAGAACAAAAGAGGAGAAAAAGACGATCATTTTTCGATGCGTGGCGAAGAACCCGCTAGGTTCCCGTTCGGGGTCAATTTGACCCGATCTCCCGGCTCTCTCGCTCATATCGGTTTGGAAGTTGACGAGCAAAAGAGAAGAATTCTCAATTTGCCGTGTGCTTCAAAGAAGAAACTAGTTAGCAGATCGATTCAGCTTTTGAACAAGTTTGATATCGAAGGTAAACTCGAAGTCTCTTTGAAATCAATTCATTCGATCCCCAAAACCGAGCAAAACGGACCCAAGCTCCACCGCAACTCGATCTTCGATCTTCGCCCTCCCCAAGCCACCGCAGAACGGATCGATTCATTCGATCCCCAAAACCAACAAAACGAGACCCAAGCGACCGCAGCCTCTTCGCTCTTCACCATCGCCCAAGCCATCGCAGCTCCACCGCGAACGGGATCGATTCATTCGATCCCCAAAACCAGCAAAACAGCACCCGAAGCCACTGCAGCTCTTCGCCCTCCCCAAGCCACCGCAGCTCTTCGCTCTTCGTACTCCCCCAAGCCACCGCGGCTCTTCGGCCTTCGATCGCCTTCCCTCAAGCCACCACGGCTCCACCGCGGGGTCTTCTCTCTCCACCCTCCCCCAAGCCACCGCGTCTCCGCCTCGGACTCCTCCGCTCCGTGCCTCTCCCTCGAAACGGATAAAATTTATCGGTGGATCCGTAGACAACAAGAAGGGGGATCTAGAGTTGCAACGGGCGATATACTCAACTACCTTCGGGTTCCGGATGCAACTAGTGACCATGAAATTCGGAGGGAGTCCGTAGGAGAAGAAGGGAATCCAGATTCAAGCAGTGATAGAGCAATGGGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

475

Amino Acids

53.77

Weight (kDa)

9.89

Isoelectric Point (pI)

61.75

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 408
AccB7I CCANNNNNTGG 1 cut(s) 448
AccBSI CCGCTC 1 cut(s) 1232
AccI GTMKAC 1 cut(s) 1279
AccII CGCG 6 cut(s) 454, 542, 1003, 1123, 1173, 1209
AccIII TCCGGA 1 cut(s) 1339
AclI AACGTT 1 cut(s) 508
AcsI RAATTY 3 cut(s) 708, 1260, 1362
AcyI GRCGYC 2 cut(s) 110, 409
AfaI GTAC 2 cut(s) 56, 1106
AgsI TTSAA 6 cut(s) 277, 526, 732, 769, 808, 1404
AhlI ACTAGT 2 cut(s) 742, 1349
AloI GAACNNNNNNTCC 2 cut(s) 287, 319
AluBI AGCT 7 cut(s) 319, 432, 763, 853, 995, 1064, 1091
AluI AGCT 7 cut(s) 319, 432, 763, 853, 995, 1064, 1091
Alw26I GTCTC 3 cut(s) 805, 935, 1216
Aor13HI TCCGGA 1 cut(s) 1339
AoxI GGCC 4 cut(s) 27, 32, 46, 1132
ApeKI GCWGC 4 cut(s) 956, 992, 1061, 1088
ApoI RAATTY 3 cut(s) 708, 1260, 1362
AspLEI GCGC 3 cut(s) 411, 454, 544
AspS9I GGNCC 3 cut(s) 28, 47, 845
AsuC2I CCSGG 3 cut(s) 31, 413, 660
AsuHPI GGTGA 1 cut(s) 964
AvaII GGWCC 1 cut(s) 845
BamHI GGATCC 2 cut(s) 195, 1272
BanI GGYRCC 1 cut(s) 408
BbsI GAAGAC 1 cut(s) 1171
BbvI GCAGC 4 cut(s) 968, 1004, 1073, 1100
BccI CCATC 6 cut(s) 136, 159, 397, 442, 983, 995
BceAI ACGGC 2 cut(s) 706, 1178
BcgI CGANNNNNNTGC 4 cut(s) 945, 979, 1040, 1074
BcnI CCSGG 3 cut(s) 31, 413, 660
BcoDI GTCTC 3 cut(s) 805, 935, 1216
BcuI ACTAGT 2 cut(s) 742, 1349
BfaI CTAG 6 cut(s) 74, 489, 624, 743, 1299, 1350
BfmI CTRYAG 1 cut(s) 1059
BfoI RGCGCY 1 cut(s) 412
BglI GCCNNNNNGGC 2 cut(s) 1123, 1162
BisI GCNGC 7 cut(s) 455, 545, 957, 993, 1062, 1089, 1124
BlsI GCNGC 7 cut(s) 456, 546, 958, 994, 1063, 1090, 1125
Bme1390I CCNGG 3 cut(s) 31, 413, 660
Bme18I GGWCC 1 cut(s) 845
BmgT120I GGNCC 3 cut(s) 28, 47, 845
BmiI GGNNCC 7 cut(s) 197, 410, 629, 847, 1166, 1274, 1338
BmrFI CCNGG 3 cut(s) 31, 413, 660
BmsI GCATC 2 cut(s) 594, 1333
BpiI GAAGAC 1 cut(s) 1171
BpuEI CTTGAG 1 cut(s) 1136
BpuMI CCSGG 3 cut(s) 31, 413, 660
Bsa29I ATCGAT 4 cut(s) 483, 755, 909, 1013
BsaAI YACGTR 1 cut(s) 85
BsaBI GATNNNNATC 1 cut(s) 260
BsaHI GRCGYC 2 cut(s) 110, 409
BsaI GGTCTC 1 cut(s) 935
BsaJI CCNNGG 7 cut(s) 62, 393, 404, 1121, 1160, 1171, 1218
BsaWI WCCGGW 3 cut(s) 41, 192, 1339
Bse118I RCCGGY 1 cut(s) 112
Bse3DI GCAATG 1 cut(s) 1425
Bse8I GATNNNNATC 1 cut(s) 260
BseAI TCCGGA 1 cut(s) 1339
BseCI ATCGAT 4 cut(s) 483, 755, 909, 1013
BseDI CCNNGG 7 cut(s) 62, 393, 404, 1121, 1160, 1171, 1218
BseGI GGATG 3 cut(s) 151, 389, 1348
BseJI GATNNNNATC 1 cut(s) 260
BseMI GCAATG 1 cut(s) 1425
BseMII CTCAG 1 cut(s) 266
BseRI GAGGAG 2 cut(s) 594, 1216
BseXI GCAGC 4 cut(s) 968, 1004, 1073, 1100
Bsh1236I CGCG 6 cut(s) 454, 542, 1003, 1123, 1173, 1209
Bsh1285I CGRYCG 2 cut(s) 954, 1142
BshFI GGCC 4 cut(s) 29, 34, 48, 1134
BshNI GGYRCC 1 cut(s) 408
BshVI ATCGAT 4 cut(s) 483, 755, 909, 1013
BsiEI CGRYCG 2 cut(s) 954, 1142
BsiSI CCGG 7 cut(s) 31, 42, 113, 193, 412, 660, 1340
BsmAI GTCTC 3 cut(s) 805, 935, 1216
BsmBI CGTCTC 1 cut(s) 1216
BsnI GGCC 4 cut(s) 29, 34, 48, 1134
Bso31I GGTCTC 1 cut(s) 935
Bsp13I TCCGGA 1 cut(s) 1339
BspANI GGCC 4 cut(s) 29, 34, 48, 1134
BspCNI CTCAG 1 cut(s) 265
BspDI ATCGAT 4 cut(s) 483, 755, 909, 1013
BspEI TCCGGA 1 cut(s) 1339
BspFNI CGCG 6 cut(s) 454, 542, 1003, 1123, 1173, 1209
BspLI GGNNCC 7 cut(s) 197, 410, 629, 847, 1166, 1274, 1338
BspMAI CTGCAG 1 cut(s) 1063
BspQI GCTCTTC 5 cut(s) 974, 1071, 1098, 1105, 1133
BspT107I GGYRCC 1 cut(s) 408
BspTNI GGTCTC 1 cut(s) 935
BsrBI CCGCTC 1 cut(s) 1232
BsrDI GCAATG 1 cut(s) 1425
BsrFI RCCGGY 1 cut(s) 112
BssAI RCCGGY 1 cut(s) 112
BssECI CCNNGG 7 cut(s) 62, 393, 404, 1121, 1160, 1171, 1218
BssNI GRCGYC 2 cut(s) 110, 409
BssT1I CCWWGG 1 cut(s) 62
Bst4CI ACNGT 2 cut(s) 405, 551
Bst6I CTCTTC 7 cut(s) 527, 967, 974, 1071, 1098, 1105, 1133
BstACI GRCGYC 2 cut(s) 110, 409
BstBAI YACGTR 1 cut(s) 85
BstC8I GCNNGC 1 cut(s) 114
BstDEI CTNAG 2 cut(s) 252, 458
BstDSI CCRYGG 4 cut(s) 404, 1121, 1160, 1171
BstF5I GGATG 3 cut(s) 151, 389, 1348
BstFNI CGCG 6 cut(s) 454, 542, 1003, 1123, 1173, 1209
BstH2I RGCGCY 1 cut(s) 412
BstHHI GCGC 3 cut(s) 411, 454, 544
BstMAI GTCTC 3 cut(s) 805, 935, 1216
BstMCI CGRYCG 2 cut(s) 954, 1142
BstMWI GCNNNNNNNGC 9 cut(s) 118, 417, 956, 992, 1052, 1061, 1088, 1123, 1162
BstNSI RCATGY 1 cut(s) 370
BstSCI CCNGG 3 cut(s) 29, 411, 658
BstSFI CTRYAG 1 cut(s) 1059
BstUI CGCG 6 cut(s) 454, 542, 1003, 1123, 1173, 1209
BstV1I GCAGC 4 cut(s) 968, 1004, 1073, 1100
BstV2I GAAGAC 1 cut(s) 1171
BstX2I RGATCY 3 cut(s) 195, 1272, 1295
BstXI CCANNNNNNTGG 1 cut(s) 237
BstYI RGATCY 3 cut(s) 195, 1272, 1295
Bsu15I ATCGAT 4 cut(s) 483, 755, 909, 1013
BsuRI GGCC 4 cut(s) 29, 34, 48, 1134
BsuTUI ATCGAT 4 cut(s) 483, 755, 909, 1013
BtgI CCRYGG 4 cut(s) 404, 1121, 1160, 1171
BtgZI GCGATG 3 cut(s) 128, 961, 973
BtsCI GGATG 3 cut(s) 151, 389, 1348
BtsI GCAGTG 2 cut(s) 1056, 1414
BtsIMutI CAGTG 2 cut(s) 1056, 1414
Cac8I GCNNGC 1 cut(s) 114
CfoI GCGC 3 cut(s) 411, 454, 544
Cfr10I RCCGGY 1 cut(s) 112
Cfr13I GGNCC 3 cut(s) 28, 47, 845
Cfr42I CCGCGG 2 cut(s) 1124, 1174
ClaI ATCGAT 4 cut(s) 483, 755, 909, 1013
CseI GACGC 2 cut(s) 118, 1198
Csp6I GTAC 2 cut(s) 55, 1105
CviAII CATG 4 cut(s) 247, 367, 497, 1358
CviQI GTAC 2 cut(s) 55, 1105
DdeI CTNAG 2 cut(s) 252, 458
DinI GGCGCC 1 cut(s) 410
Eam1104I CTCTTC 7 cut(s) 527, 967, 974, 1071, 1098, 1105, 1133
EarI CTCTTC 7 cut(s) 527, 967, 974, 1071, 1098, 1105, 1133
EciI GGCGGA 2 cut(s) 147, 1204
Eco130I CCWWGG 1 cut(s) 62
Eco31I GGTCTC 1 cut(s) 935
Eco32I GATATC 1 cut(s) 781
Eco47I GGWCC 1 cut(s) 845
EcoRI GAATTC 1 cut(s) 708
EcoRV GATATC 1 cut(s) 781
EcoT14I CCWWGG 1 cut(s) 62
EgeI GGCGCC 1 cut(s) 410
EheI GGCGCC 1 cut(s) 410
ErhI CCWWGG 1 cut(s) 62
Esp3I CGTCTC 1 cut(s) 1216
FaeI CATG 4 cut(s) 250, 370, 500, 1361
FaiI YATR 8 cut(s) 248, 290, 368, 374, 498, 675, 1319, 1359
FatI CATG 4 cut(s) 246, 366, 496, 1357
FauI CCCGC 3 cut(s) 215, 628, 1166
FblI GTMKAC 1 cut(s) 1279
Fnu4HI GCNGC 7 cut(s) 455, 545, 957, 993, 1062, 1089, 1124
FokI GGATG 3 cut(s) 138, 376, 1355
Fsp4HI GCNGC 7 cut(s) 455, 545, 957, 993, 1062, 1089, 1124
FspBI CTAG 6 cut(s) 74, 489, 624, 743, 1299, 1350
GlaI GCGC 3 cut(s) 410, 453, 543
GluI GCNGC 7 cut(s) 455, 545, 957, 993, 1062, 1089, 1124
HaeII RGCGCY 1 cut(s) 412
HaeIII GGCC 4 cut(s) 29, 34, 48, 1134
HapII CCGG 7 cut(s) 31, 42, 113, 193, 412, 660, 1340
HgaI GACGC 2 cut(s) 118, 1198
HhaI GCGC 3 cut(s) 411, 454, 544
Hin1I GRCGYC 2 cut(s) 110, 409
Hin1II CATG 4 cut(s) 250, 370, 500, 1361
Hin6I GCGC 3 cut(s) 409, 452, 542
HinP1I GCGC 3 cut(s) 409, 452, 542
HincII GTYRAC 1 cut(s) 691
HindII GTYRAC 1 cut(s) 691
HindIII AAGCTT 1 cut(s) 317
HinfI GANTC 9 cut(s) 250, 485, 757, 911, 1015, 1223, 1373, 1393, 1400
HpaII CCGG 7 cut(s) 31, 42, 113, 193, 412, 660, 1340
HphI GGTGA 1 cut(s) 964
Hpy166II GTNNAC 3 cut(s) 691, 791, 1280
Hpy188I TCNGA 5 cut(s) 255, 394, 471, 1222, 1368
Hpy188III TCNNGA 5 cut(s) 106, 132, 1299, 1340, 1397
Hpy8I GTNNAC 3 cut(s) 691, 791, 1280
Hpy99I CGWCG 3 cut(s) 101, 170, 179
HpyAV CCTTC 8 cut(s) 19, 547, 779, 1145, 1155, 1283, 1340, 1382
HpyCH4III ACNGT 2 cut(s) 405, 551
HpyCH4IV ACGT 2 cut(s) 84, 508
HpyCH4V TGCA 3 cut(s) 1061, 1307, 1346
HpyF10VI GCNNNNNNNGC 9 cut(s) 118, 417, 956, 992, 1052, 1061, 1088, 1123, 1162
HpyF3I CTNAG 2 cut(s) 252, 458
HpySE526I ACGT 2 cut(s) 84, 508
Hsp92I GRCGYC 2 cut(s) 110, 409
Hsp92II CATG 4 cut(s) 250, 370, 500, 1361
HspAI GCGC 3 cut(s) 409, 452, 542
KasI GGCGCC 1 cut(s) 408
Kpn2I TCCGGA 1 cut(s) 1339
KroI GCCGGC 1 cut(s) 112
KroNI GCCGGC 1 cut(s) 114
KspI CCGCGG 2 cut(s) 1124, 1174
LguI GCTCTTC 5 cut(s) 974, 1071, 1098, 1105, 1133
LmnI GCTCC 4 cut(s) 858, 1000, 1170, 1237
Lsp1109I GCAGC 4 cut(s) 968, 1004, 1073, 1100
LweI GCATC 2 cut(s) 594, 1333
MaeI CTAG 6 cut(s) 74, 489, 624, 743, 1299, 1350
MaeII ACGT 2 cut(s) 84, 508
MaeIII GTNAC 2 cut(s) 85, 1352
MbiI CCGCTC 1 cut(s) 1232
MflI RGATCY 3 cut(s) 195, 1272, 1295
MluCI AATT 8 cut(s) 285, 526, 643, 708, 715, 813, 1260, 1362
Mly113I GGCGCC 1 cut(s) 409
MlyI GAGTC 3 cut(s) 244, 1217, 1382
MmeI TCCRAC 1 cut(s) 62
MreI CGCCGGCG 1 cut(s) 112
MroI TCCGGA 1 cut(s) 1339
MroNI GCCGGC 1 cut(s) 112
MseI TTAA 2 cut(s) 321, 332
MspA1I CMGCKG 2 cut(s) 1123, 1173
MspI CCGG 7 cut(s) 31, 42, 113, 193, 412, 660, 1340
MspR9I CCNGG 3 cut(s) 31, 413, 660
MvnI CGCG 6 cut(s) 454, 542, 1003, 1123, 1173, 1209
MwoI GCNNNNNNNGC 9 cut(s) 118, 417, 956, 992, 1052, 1061, 1088, 1123, 1162
NaeI GCCGGC 1 cut(s) 114
NarI GGCGCC 1 cut(s) 409
NciI CCSGG 3 cut(s) 31, 413, 660
NgoMIV GCCGGC 1 cut(s) 112
NlaIII CATG 4 cut(s) 250, 370, 500, 1361
NlaIV GGNNCC 7 cut(s) 197, 410, 629, 847, 1166, 1274, 1338
NmuCI GTSAC 1 cut(s) 1352
NspI RCATGY 1 cut(s) 370
PciSI GCTCTTC 5 cut(s) 974, 1071, 1098, 1105, 1133
PcsI WCGNNNNNNNCGW 5 cut(s) 130, 174, 915, 1019, 1273
PdiI GCCGGC 1 cut(s) 114
PfeI GAWTC 6 cut(s) 485, 757, 911, 1015, 1393, 1400
PflMI CCANNNNNTGG 1 cut(s) 448
PkrI GCNGC 7 cut(s) 456, 546, 958, 994, 1063, 1090, 1125
Ple19I CGATCG 1 cut(s) 1142
PleI GAGTC 3 cut(s) 244, 1217, 1381
PluTI GGCGCC 1 cut(s) 412
PpsI GAGTC 3 cut(s) 244, 1217, 1381
Ppu21I YACGTR 1 cut(s) 85
Psp1406I AACGTT 1 cut(s) 508
PspN4I GGNNCC 7 cut(s) 197, 410, 629, 847, 1166, 1274, 1338
PspPI GGNCC 3 cut(s) 28, 47, 845
PstI CTGCAG 1 cut(s) 1063
PsuI RGATCY 3 cut(s) 195, 1272, 1295
PvuI CGATCG 1 cut(s) 1142
RsaI GTAC 2 cut(s) 56, 1106
RsaNI GTAC 2 cut(s) 55, 1105
SacII CCGCGG 2 cut(s) 1124, 1174
SapI GCTCTTC 5 cut(s) 974, 1071, 1098, 1105, 1133
SaqAI TTAA 2 cut(s) 321, 332
SatI GCNGC 7 cut(s) 455, 545, 957, 993, 1062, 1089, 1124
Sau96I GGNCC 3 cut(s) 28, 47, 845
SchI GAGTC 3 cut(s) 244, 1217, 1382
ScrFI CCNGG 3 cut(s) 31, 413, 660
SfaNI GCATC 2 cut(s) 594, 1333
SfcI CTRYAG 1 cut(s) 1059
SfoI GGCGCC 1 cut(s) 410
Sfr303I CCGCGG 2 cut(s) 1124, 1174
SgrAI CRCCGGYG 1 cut(s) 112
SgrBI CCGCGG 2 cut(s) 1124, 1174
SinI GGWCC 1 cut(s) 845
SmlI CTYRAG 1 cut(s) 1151
SmoI CTYRAG 1 cut(s) 1151
SpeI ACTAGT 2 cut(s) 742, 1349
Sse9I AATT 8 cut(s) 285, 526, 643, 708, 715, 813, 1260, 1362
SspDI GGCGCC 1 cut(s) 408
SspI AATATT 1 cut(s) 330
SspMI CTAG 6 cut(s) 74, 489, 624, 743, 1299, 1350
StyD4I CCNGG 3 cut(s) 29, 411, 658
StyI CCWWGG 1 cut(s) 62
TaaI ACNGT 2 cut(s) 405, 551
TaiI ACGT 2 cut(s) 87, 511
TasI AATT 8 cut(s) 285, 526, 643, 708, 715, 813, 1260, 1362
TauI GCSGC 3 cut(s) 457, 547, 1126
TfiI GAWTC 6 cut(s) 485, 757, 911, 1015, 1393, 1400
Tru1I TTAA 2 cut(s) 321, 332
Tru9I TTAA 2 cut(s) 321, 332
TscAI CASTG 2 cut(s) 1063, 1414
TseFI GTSAC 1 cut(s) 1352
TseI GCWGC 4 cut(s) 956, 992, 1061, 1088
Tsp45I GTSAC 1 cut(s) 1352
TspDTI ATGAA 5 cut(s) 249, 806, 903, 1007, 1374
TspGWI ACGGA 6 cut(s) 858, 919, 1224, 1265, 1268, 1366
TspRI CASTG 2 cut(s) 1063, 1414
Van91I CCANNNNNTGG 1 cut(s) 448
VpaK11BI GGWCC 1 cut(s) 845
XapI RAATTY 3 cut(s) 708, 1260, 1362
XbaI TCTAGA 1 cut(s) 1298
XceI RCATGY 1 cut(s) 370
XmiI GTMKAC 1 cut(s) 1279
XspI CTAG 6 cut(s) 74, 489, 624, 743, 1299, 1350
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.