Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1C

Orthogroup ID

OG0017812

Physical Location & Seq

Genomic Coordinates Reverse (-)

37318176 .. 37320644

Gene Structure 2469 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1CG170000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 495 bp

ATGAAAGATGTGATTGGGTCTTGTTCTTCTCTCACTCCGACTCCCACCACGAGTCCAACGACATTCTCGCCTCCTCCGGCGACTACCTCCGCCTCTGGGAGGTCAAAGACTCCTCCGTTGACCGCCTCGAGCCCATCTCCGTCCTCAACAACTCCTAGACCAGCGAAGATCGAGCCTCGGCGAATCGGAACCTCCAGCATCGACACCACCTGTACGATTTGGGACATCGAGAAGGGAGTCTTCGAGACGCAGCTGATCGCTCACGATAAGGAGGTTTACGACATTGCGTGGGGCGAAGCTAGGGTTTTCGCCTCCGTCTCCGCCGACGGGTTGCTGCTTTTCATATATCTAGTTCAAGGATTCGCTGGAGAAGACGAAGAAGGATCGACAAATAAACGATTGGCTTTTCGTATTTCTGGATCTGGCAAGGTGATGAAGTTGATTTGTTCCTCTAACCAGTATTTTTTATATGTGTCAAAACCAAACAATAGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001708 GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0008150 GO:0008544 GO:0009719 GO:0009723 GO:0009725 GO:0009733 GO:0009888 GO:0009913 GO:0009957 GO:0009987 GO:0010026 GO:0010033 GO:0030154 GO:0030855 GO:0032502 GO:0032879 GO:0032880 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045165 GO:0048856 GO:0048869 GO:0050789 GO:0050896 GO:0060429 GO:0065007 GO:0090558 GO:0097159 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WD40

Protein Analysis

164

Amino Acids

17.56

Weight (kDa)

7.68

Isoelectric Point (pI)

50.13

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Beta-prop_WDR5	PF25175	61 - 111	2.6e-06	WDR5 beta-propeller domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0017812)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr4g0442971
rosa_multiflora	Rmu_sc0013601.1_g000001
rosa_roxburghii	Rroxscaffold_1G00015090 Rroxscaffold_2G00111100 Rroxscaffold_2G00138840 Rroxscaffold_3G00223880 Rroxscaffold_6G00405200
rosa_rugosa	Rorug01G0219200 Rorug05G0153000
rosa_samantha	Rh1CG170000 Rh4CG035300 Rh6AG185300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	90, 123, 321
AclWI	GGATC	2 cut(s)	391, 427
AfaI	GTAC	1 cut(s)	214
AfiI	CCNNNNNNNGG	3 cut(s)	96, 99, 327
AgsI	TTSAA	1 cut(s)	356
AluBI	AGCT	2 cut(s)	253, 299
AluI	AGCT	2 cut(s)	253, 299
Alw26I	GTCTC	2 cut(s)	239, 322
AlwI	GGATC	2 cut(s)	391, 427
Ama87I	CYCGRG	1 cut(s)	127
ApeKI	GCWGC	2 cut(s)	250, 334
AsuHPI	GGTGA	1 cut(s)	442
AvaI	CYCGRG	1 cut(s)	127
BanII	GRGCYC	1 cut(s)	134
BauI	CACGAG	1 cut(s)	49
BbsI	GAAGAC	2 cut(s)	232, 378
BbvI	GCAGC	2 cut(s)	262, 321
BccI	CCATC	1 cut(s)	142
BcoDI	GTCTC	2 cut(s)	239, 322
BfaI	CTAG	3 cut(s)	156, 300, 350
BisI	GCNGC	2 cut(s)	251, 335
BlsI	GCNGC	2 cut(s)	252, 336
BmeT110I	CYCGRG	1 cut(s)	127
BmiI	GGNNCC	1 cut(s)	190
BmsI	GCATC	1 cut(s)	207
BpiI	GAAGAC	2 cut(s)	232, 378
BplI	GAGNNNNNCTC	2 cut(s)	121, 153
BpmI	CTGGAG	2 cut(s)	178, 387
BsaJI	CCNNGG	1 cut(s)	176
BsaXI	ACNNNNNCTCC	2 cut(s)	25, 55
Bsc4I	CCNNNNNNNGG	3 cut(s)	96, 99, 327
Bse1I	ACTGG	1 cut(s)	457
Bse3DI	GCAATG	1 cut(s)	282
BseDI	CCNNGG	1 cut(s)	176
BseLI	CCNNNNNNNGG	3 cut(s)	96, 99, 327
BseMI	GCAATG	1 cut(s)	282
BseNI	ACTGG	1 cut(s)	457
BseRI	GAGGAG	2 cut(s)	63, 102
BseXI	GCAGC	2 cut(s)	262, 321
BsiHKCI	CYCGRG	1 cut(s)	127
BsiSI	CCGG	1 cut(s)	77
BslFI	GGGAC	1 cut(s)	236
BslI	CCNNNNNNNGG	3 cut(s)	96, 99, 327
BsmAI	GTCTC	2 cut(s)	239, 322
BsmBI	CGTCTC	2 cut(s)	239, 322
BsmFI	GGGAC	1 cut(s)	236
BsoBI	CYCGRG	1 cut(s)	127
Bsp1286I	GDGCHC	1 cut(s)	134
Bsp143I	GATC	4 cut(s)	168, 255, 383, 419
BspACI	CCGC	3 cut(s)	90, 123, 321
BspLI	GGNNCC	1 cut(s)	190
BspPI	GGATC	2 cut(s)	391, 427
BsrDI	GCAATG	1 cut(s)	282
BsrI	ACTGG	1 cut(s)	457
BssECI	CCNNGG	1 cut(s)	176
BssMI	GATC	4 cut(s)	168, 255, 383, 419
BssSI	CACGAG	1 cut(s)	49
Bst2BI	CACGAG	1 cut(s)	49
BstENI	CCTNNNNNAGG	1 cut(s)	97
BstKTI	GATC	4 cut(s)	171, 258, 386, 422
BstMAI	GTCTC	2 cut(s)	239, 322
BstMBI	GATC	4 cut(s)	168, 255, 383, 419
BstV1I	GCAGC	2 cut(s)	262, 321
BstV2I	GAAGAC	2 cut(s)	232, 378
BstX2I	RGATCY	1 cut(s)	419
BstYI	RGATCY	1 cut(s)	419
CseI	GACGC	1 cut(s)	256
Csp6I	GTAC	1 cut(s)	213
CviJI	RGCY	5 cut(s)	132, 175, 253, 299, 404
CviKI_1	RGCY	5 cut(s)	132, 175, 253, 299, 404
CviQI	GTAC	1 cut(s)	213
DpnI	GATC	4 cut(s)	170, 257, 385, 421
DpnII	GATC	4 cut(s)	168, 255, 383, 419
EciI	GGCGGA	2 cut(s)	79, 310
Eco24I	GRGCYC	1 cut(s)	134
Eco88I	CYCGRG	1 cut(s)	127
EcoNI	CCTNNNNNAGG	1 cut(s)	97
EcoT38I	GRGCYC	1 cut(s)	134
Esp3I	CGTCTC	2 cut(s)	239, 322
FaiI	YATR	4 cut(s)	344, 346, 469, 471
FalI	AAGNNNNNCTT	2 cut(s)	224, 256
FaqI	GGGAC	1 cut(s)	236
Fnu4HI	GCNGC	2 cut(s)	251, 335
FriOI	GRGCYC	1 cut(s)	134
Fsp4HI	GCNGC	2 cut(s)	251, 335
FspBI	CTAG	3 cut(s)	156, 300, 350
GluI	GCNGC	2 cut(s)	251, 335
GsuI	CTGGAG	2 cut(s)	178, 387
HapII	CCGG	1 cut(s)	77
HgaI	GACGC	1 cut(s)	256
HincII	GTYRAC	1 cut(s)	120
HindII	GTYRAC	1 cut(s)	120
HinfI	GANTC	6 cut(s)	40, 52, 109, 183, 237, 360
HpaII	CCGG	1 cut(s)	77
HphI	GGTGA	1 cut(s)	442
Hpy166II	GTNNAC	2 cut(s)	120, 277
Hpy188I	TCNGA	2 cut(s)	39, 188
Hpy188III	TCNNGA	4 cut(s)	229, 244, 263, 417
Hpy8I	GTNNAC	2 cut(s)	120, 277
Hpy99I	CGWCG	1 cut(s)	329
HpyAV	CCTTC	2 cut(s)	226, 374
Kzo9I	GATC	4 cut(s)	168, 255, 383, 419
LpnPI	CCDG	9 cut(s)	81, 90, 174, 208, 223, 351, 402, 408, 470
Lsp1109I	GCAGC	2 cut(s)	262, 321
LweI	GCATC	1 cut(s)	207
MaeI	CTAG	3 cut(s)	156, 300, 350
MalI	GATC	4 cut(s)	170, 257, 385, 421
MboI	GATC	4 cut(s)	168, 255, 383, 419
MboII	GAAGA	5 cut(s)	18, 178, 232, 383, 389
MflI	RGATCY	1 cut(s)	419
MhlI	GDGCHC	1 cut(s)	134
MlyI	GAGTC	4 cut(s)	34, 61, 103, 246
MmeI	TCCRAC	2 cut(s)	62, 80
MspA1I	CMGCKG	1 cut(s)	253
MspI	CCGG	1 cut(s)	77
NdeII	GATC	4 cut(s)	168, 255, 383, 419
NlaIV	GGNNCC	1 cut(s)	190
NmeAIII	GCCGAG	1 cut(s)	157
PaeR7I	CTCGAG	1 cut(s)	127
PcsI	WCGNNNNNNNCGW	1 cut(s)	56
PfeI	GAWTC	2 cut(s)	183, 360
PkrI	GCNGC	2 cut(s)	252, 336
PleI	GAGTC	4 cut(s)	34, 60, 103, 245
PpsI	GAGTC	4 cut(s)	34, 60, 103, 245
PspN4I	GGNNCC	1 cut(s)	190
PspXI	VCTCGAGB	1 cut(s)	127
PsuI	RGATCY	1 cut(s)	419
PvuII	CAGCTG	1 cut(s)	253
RsaI	GTAC	1 cut(s)	214
RsaNI	GTAC	1 cut(s)	213
SatI	GCNGC	2 cut(s)	251, 335
Sau3AI	GATC	4 cut(s)	168, 255, 383, 419
SchI	GAGTC	4 cut(s)	34, 61, 103, 246
SduI	GDGCHC	1 cut(s)	134
SetI	ASST	8 cut(s)	89, 104, 194, 212, 255, 276, 301, 432
SfaNI	GCATC	1 cut(s)	207
Sfr274I	CTCGAG	1 cut(s)	127
SlaI	CTCGAG	1 cut(s)	127
SmlI	CTYRAG	1 cut(s)	127
SmoI	CTYRAG	1 cut(s)	127
SsiI	CCGC	3 cut(s)	90, 123, 321
SspMI	CTAG	3 cut(s)	156, 300, 350
TaqI	TCGA	6 cut(s)	128, 171, 201, 228, 243, 386
TfiI	GAWTC	2 cut(s)	183, 360
TseI	GCWGC	2 cut(s)	250, 334
TspDTI	ATGAA	3 cut(s)	17, 331, 449
TspGWI	ACGGA	3 cut(s)	105, 129, 304
XagI	CCTNNNNNAGG	1 cut(s)	97
XhoI	CTCGAG	1 cut(s)	127
XspI	CTAG	3 cut(s)	156, 300, 350

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.