Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0017812

Physical Location & Seq

Genomic Coordinates Reverse (-)

18734280 .. 18740472

Gene Structure 6193 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00015090.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 900 bp

ATGCCGCCACGGATGGCTTCAACCACGAAAGAATCGTCGGTGAGGGCCGTTTGGGAACCGTGCCGCAAGGAGCGAAGTGTAGATCTGCAGAGTGCGGACCATCAAGGCTCGGGGAGAATCGACGGCGACGACGAAGTTCTAAAGCTTCATTGGAGGAGGATTTCGATTTTTGGAGATCGAGATTGGAGAGAGAGGTTGAGACCGAGATTTAGGGCTGAGATTGAGATGGTATCGATACTATCGACAAGCAAAGAGAGGGAGGCCGAGGTCGAGTACTCGAACCCAAGCTCCACCGCAACTCGATCTTCGCTCTTCGCCCTCCCCAAGCCACCGCAGAATAGATCGATTCATTCGATCCCCAAAACCAACAAAACGGACCCAAGCGACCGCAGCCCTTCGCTCTTCACCATCGCCCAAGCCATCGCAGCTCCACCGCAGCTCTTCGCTCGTCGCCCTCCCCCAAGCCACCGCAGAACAGATCGATTCATTCGATCCCCAAAACCAGCAAAACGACCGAAGCCACCGCAGCTCTTCGCTCTTCGCCCTCCCCCAAGCCACCACGGCTCTTCGCTCTTCGTACTCCCCCAAGCCACCGCAGCTCTTCGGCCTTCGATCGCCTTCCCTCAAGCCACCACGGCTCCACCGCAGTCTTCGCTCTCCACCCTCCCCCAAGCCACCGCGTCTCGCCTCGGACTCCTCTCGCTCCGTGCCTCTCGCCTCGAAATGGATAAAATTTATCGGTGGATCTGTAGACAACAAGAAGGGGGATCTAGAGTTGCAACAGGCGATATACTCAACTACCTTCAGGTTCCAGATGCAACTAGTGACCATGAAATTCGGAGGGAGTCTATAGGAGAAGAAGGGAATCCAGATTCAAGCAGTGATAGAGCAATGGGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF4588

Protein Analysis

299

Amino Acids

33.42

Weight (kDa)

10.31

Isoelectric Point (pI)

72.93

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017812)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr4g0442971
rosa_multiflora	Rmu_sc0013601.1_g000001
rosa_roxburghii	Rroxscaffold_1G00015090 Rroxscaffold_2G00111100 Rroxscaffold_2G00138840 Rroxscaffold_3G00223880 Rroxscaffold_6G00405200
rosa_rugosa	Rorug01G0219200 Rorug05G0153000
rosa_samantha	Rh1CG170000 Rh4CG035300 Rh6AG185300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	751
AccII	CGCG	1 cut(s)	680
AclWI	GGATC	4 cut(s)	349, 486, 752, 775
AcsI	RAATTY	2 cut(s)	732, 834
AcuI	CTGAAG	1 cut(s)	788
AfaI	GTAC	2 cut(s)	275, 579
AfiI	CCNNNNNNNGG	1 cut(s)	724
AgsI	TTSAA	2 cut(s)	21, 876
AhlI	ACTAGT	1 cut(s)	821
AloI	GAACNNNNNNTCC	2 cut(s)	272, 304
AluBI	AGCT	6 cut(s)	145, 288, 428, 439, 529, 599
AluI	AGCT	6 cut(s)	145, 288, 428, 439, 529, 599
Alw26I	GTCTC	2 cut(s)	193, 687
AlwI	GGATC	4 cut(s)	349, 486, 752, 775
Ama87I	CYCGRG	1 cut(s)	109
AoxI	GGCC	3 cut(s)	45, 261, 605
ApeKI	GCWGC	5 cut(s)	390, 425, 436, 526, 596
ApoI	RAATTY	2 cut(s)	732, 834
ArsI	GACNNNNNNTTYG	2 cut(s)	20, 52
AspS9I	GGNCC	3 cut(s)	45, 97, 376
AsuHPI	GGTGA	2 cut(s)	52, 397
AvaI	CYCGRG	1 cut(s)	109
AvaII	GGWCC	2 cut(s)	97, 376
BbsI	GAAGAC	1 cut(s)	642
BbvI	GCAGC	5 cut(s)	402, 437, 448, 538, 608
BccI	CCATC	5 cut(s)	7, 108, 220, 416, 428
BceAI	ACGGC	4 cut(s)	32, 139, 577, 651
BcoDI	GTCTC	2 cut(s)	193, 687
BcuI	ACTAGT	1 cut(s)	821
BfaI	CTAG	2 cut(s)	771, 822
BfmI	CTRYAG	3 cut(s)	86, 748, 849
BglI	GCCNNNNNGGC	2 cut(s)	561, 635
BglII	AGATCT	1 cut(s)	82
BisI	GCNGC	7 cut(s)	5, 64, 391, 426, 437, 527, 597
BlsI	GCNGC	7 cut(s)	6, 65, 392, 427, 438, 528, 598
BmcAI	AGTACT	1 cut(s)	275
Bme18I	GGWCC	2 cut(s)	97, 376
BmeT110I	CYCGRG	1 cut(s)	109
BmgT120I	GGNCC	3 cut(s)	45, 97, 376
BmiI	GGNNCC	4 cut(s)	57, 378, 639, 810
BmsI	GCATC	1 cut(s)	805
BpiI	GAAGAC	1 cut(s)	642
BpuEI	CTTGAG	1 cut(s)	609
Bsa29I	ATCGAT	3 cut(s)	233, 344, 481
BsaI	GGTCTC	1 cut(s)	193
BsaJI	CCNNGG	5 cut(s)	8, 264, 559, 633, 688
BsaXI	ACNNNNNCTCC	4 cut(s)	272, 302, 622, 652
Bsc4I	CCNNNNNNNGG	1 cut(s)	724
Bse3DI	GCAATG	1 cut(s)	897
BseCI	ATCGAT	3 cut(s)	233, 344, 481
BseDI	CCNNGG	5 cut(s)	8, 264, 559, 633, 688
BseGI	GGATG	1 cut(s)	18
BseLI	CCNNNNNNNGG	1 cut(s)	724
BseMI	GCAATG	1 cut(s)	897
BseMII	CTCAG	1 cut(s)	207
BseRI	GAGGAG	2 cut(s)	169, 686
BseXI	GCAGC	5 cut(s)	402, 437, 448, 538, 608
Bsh1236I	CGCG	1 cut(s)	680
Bsh1285I	CGRYCG	3 cut(s)	388, 515, 615
BshFI	GGCC	3 cut(s)	47, 263, 607
BshVI	ATCGAT	3 cut(s)	233, 344, 481
BsiEI	CGRYCG	3 cut(s)	388, 515, 615
BsiHKCI	CYCGRG	1 cut(s)	109
BslI	CCNNNNNNNGG	1 cut(s)	724
BsmAI	GTCTC	2 cut(s)	193, 687
BsmBI	CGTCTC	1 cut(s)	687
BsnI	GGCC	3 cut(s)	47, 263, 607
Bso31I	GGTCTC	1 cut(s)	193
BsoBI	CYCGRG	1 cut(s)	109
BspANI	GGCC	3 cut(s)	47, 263, 607
BspCNI	CTCAG	1 cut(s)	208
BspDI	ATCGAT	3 cut(s)	233, 344, 481
BspFNI	CGCG	1 cut(s)	680
BspLI	GGNNCC	4 cut(s)	57, 378, 639, 810
BspMAI	CTGCAG	1 cut(s)	90
BspPI	GGATC	4 cut(s)	349, 486, 752, 775
BspQI	GCTCTTC	8 cut(s)	317, 407, 446, 536, 543, 571, 578, 606
BspTNI	GGTCTC	1 cut(s)	193
BsrDI	GCAATG	1 cut(s)	897
BssECI	CCNNGG	5 cut(s)	8, 264, 559, 633, 688
Bst4CI	ACNGT	1 cut(s)	60
Bst6I	CTCTTC	8 cut(s)	317, 407, 446, 536, 543, 571, 578, 606
BstDEI	CTNAG	1 cut(s)	216
BstDSI	CCRYGG	3 cut(s)	8, 559, 633
BstF5I	GGATG	1 cut(s)	18
BstFNI	CGCG	1 cut(s)	680
BstMAI	GTCTC	2 cut(s)	193, 687
BstMCI	CGRYCG	3 cut(s)	388, 515, 615
BstMWI	GCNNNNNNNGC	7 cut(s)	390, 425, 526, 561, 596, 635, 652
BstSFI	CTRYAG	3 cut(s)	86, 748, 849
BstUI	CGCG	1 cut(s)	680
BstV1I	GCAGC	5 cut(s)	402, 437, 448, 538, 608
BstV2I	GAAGAC	1 cut(s)	642
BstX2I	RGATCY	3 cut(s)	82, 744, 767
BstYI	RGATCY	3 cut(s)	82, 744, 767
Bsu15I	ATCGAT	3 cut(s)	233, 344, 481
BsuRI	GGCC	3 cut(s)	47, 263, 607
BsuTUI	ATCGAT	3 cut(s)	233, 344, 481
BtgI	CCRYGG	3 cut(s)	8, 559, 633
BtgZI	GCGATG	2 cut(s)	394, 406
BtsCI	GGATG	1 cut(s)	18
BtsI	GCAGTG	1 cut(s)	886
BtsIMutI	CAGTG	1 cut(s)	886
Cfr13I	GGNCC	3 cut(s)	45, 97, 376
ClaI	ATCGAT	3 cut(s)	233, 344, 481
CseI	GACGC	1 cut(s)	669
Csp6I	GTAC	2 cut(s)	274, 578
CviAII	CATG	1 cut(s)	830
CviQI	GTAC	2 cut(s)	274, 578
DdeI	CTNAG	1 cut(s)	216
Eam1104I	CTCTTC	8 cut(s)	317, 407, 446, 536, 543, 571, 578, 606
EarI	CTCTTC	8 cut(s)	317, 407, 446, 536, 543, 571, 578, 606
Eco31I	GGTCTC	1 cut(s)	193
Eco47I	GGWCC	2 cut(s)	97, 376
Eco57I	CTGAAG	1 cut(s)	788
Eco88I	CYCGRG	1 cut(s)	109
Esp3I	CGTCTC	1 cut(s)	687
FaeI	CATG	1 cut(s)	833
FaiI	YATR	3 cut(s)	791, 831, 851
FatI	CATG	1 cut(s)	829
FblI	GTMKAC	1 cut(s)	751
Fnu4HI	GCNGC	7 cut(s)	5, 64, 391, 426, 437, 527, 597
FokI	GGATG	1 cut(s)	25
Fsp4HI	GCNGC	7 cut(s)	5, 64, 391, 426, 437, 527, 597
FspBI	CTAG	2 cut(s)	771, 822
GluI	GCNGC	7 cut(s)	5, 64, 391, 426, 437, 527, 597
HaeIII	GGCC	3 cut(s)	47, 263, 607
HgaI	GACGC	1 cut(s)	669
Hin1II	CATG	1 cut(s)	833
HindIII	AAGCTT	1 cut(s)	143
HinfI	GANTC	8 cut(s)	32, 117, 346, 483, 693, 845, 865, 872
HphI	GGTGA	2 cut(s)	52, 397
Hpy166II	GTNNAC	1 cut(s)	752
Hpy188I	TCNGA	2 cut(s)	692, 840
Hpy188III	TCNNGA	4 cut(s)	179, 771, 812, 869
Hpy8I	GTNNAC	1 cut(s)	752
Hpy99I	CGWCG	5 cut(s)	40, 125, 131, 134, 453
HpyAV	CCTTC	6 cut(s)	405, 618, 628, 755, 812, 854
HpyCH4III	ACNGT	1 cut(s)	60
HpyCH4V	TGCA	3 cut(s)	88, 779, 818
HpyF10VI	GCNNNNNNNGC	7 cut(s)	390, 425, 526, 561, 596, 635, 652
HpyF3I	CTNAG	1 cut(s)	216
Hsp92II	CATG	1 cut(s)	833
LguI	GCTCTTC	8 cut(s)	317, 407, 446, 536, 543, 571, 578, 606
LmnI	GCTCC	5 cut(s)	70, 293, 433, 643, 708
LpnPI	CCDG	5 cut(s)	516, 768, 791, 825, 882
Lsp1109I	GCAGC	5 cut(s)	402, 437, 448, 538, 608
LweI	GCATC	1 cut(s)	805
MaeI	CTAG	2 cut(s)	771, 822
MaeIII	GTNAC	1 cut(s)	824
MflI	RGATCY	3 cut(s)	82, 744, 767
MluCI	AATT	2 cut(s)	732, 834
MlyI	GAGTC	2 cut(s)	687, 854
MvnI	CGCG	1 cut(s)	680
MwoI	GCNNNNNNNGC	7 cut(s)	390, 425, 526, 561, 596, 635, 652
NlaIII	CATG	1 cut(s)	833
NlaIV	GGNNCC	4 cut(s)	57, 378, 639, 810
NmeAIII	GCCGAG	1 cut(s)	289
NmuCI	GTSAC	1 cut(s)	824
PciSI	GCTCTTC	8 cut(s)	317, 407, 446, 536, 543, 571, 578, 606
PcsI	WCGNNNNNNNCGW	6 cut(s)	32, 126, 129, 239, 350, 487
PfeI	GAWTC	6 cut(s)	32, 117, 346, 483, 865, 872
PkrI	GCNGC	7 cut(s)	6, 65, 392, 427, 438, 528, 598
Ple19I	CGATCG	1 cut(s)	615
PleI	GAGTC	2 cut(s)	687, 853
PpsI	GAGTC	2 cut(s)	687, 853
PspN4I	GGNNCC	4 cut(s)	57, 378, 639, 810
PspPI	GGNCC	3 cut(s)	45, 97, 376
PstI	CTGCAG	1 cut(s)	90
PsuI	RGATCY	3 cut(s)	82, 744, 767
PvuI	CGATCG	1 cut(s)	615
RsaI	GTAC	2 cut(s)	275, 579
RsaNI	GTAC	2 cut(s)	274, 578
SapI	GCTCTTC	8 cut(s)	317, 407, 446, 536, 543, 571, 578, 606
SatI	GCNGC	7 cut(s)	5, 64, 391, 426, 437, 527, 597
Sau96I	GGNCC	3 cut(s)	45, 97, 376
ScaI	AGTACT	1 cut(s)	275
SchI	GAGTC	2 cut(s)	687, 854
SfaNI	GCATC	1 cut(s)	805
SfcI	CTRYAG	3 cut(s)	86, 748, 849
SinI	GGWCC	2 cut(s)	97, 376
SmlI	CTYRAG	1 cut(s)	624
SmoI	CTYRAG	1 cut(s)	624
SpeI	ACTAGT	1 cut(s)	821
Sse9I	AATT	2 cut(s)	732, 834
SspMI	CTAG	2 cut(s)	771, 822
TaaI	ACNGT	1 cut(s)	60
TaqII	GACCGA	2 cut(s)	217, 529
TasI	AATT	2 cut(s)	732, 834
TatI	WGTACW	1 cut(s)	273
TauI	GCSGC	2 cut(s)	7, 66
TfiI	GAWTC	6 cut(s)	32, 117, 346, 483, 865, 872
TscAI	CASTG	1 cut(s)	886
TseFI	GTSAC	1 cut(s)	824
TseI	GCWGC	5 cut(s)	390, 425, 436, 526, 596
Tsp45I	GTSAC	1 cut(s)	824
TspDTI	ATGAA	4 cut(s)	137, 338, 475, 846
TspGWI	ACGGA	3 cut(s)	25, 389, 695
TspRI	CASTG	1 cut(s)	886
VpaK11BI	GGWCC	2 cut(s)	97, 376
XapI	RAATTY	2 cut(s)	732, 834
XbaI	TCTAGA	1 cut(s)	770
XmiI	GTMKAC	1 cut(s)	751
XspI	CTAG	2 cut(s)	771, 822
ZrmI	AGTACT	1 cut(s)	275

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.